TCONS_00055061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055061
Unique NameTCONS_00055061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055061 ID=TCONS_00055061|Name=TCONS_00055061|organism=Clytia hemisphaerica|type=transcript|length=609bp
CAATTTTGGTCGAAATGTgtgttttttcaattctgttattCAAGCATTGT
ATTCAGTTGATGCCTTTCGGAAGTTTGTTTGTGAATATGAAAATAGTGCT
GAAAATGACCCAGTTATAAATGTGATGAAACACTCATTTATTTCTATAAC
GTTCTCTGATGCCCCATTAGAAACATACCCATTATTGCCATATTTTGAGC
TGCCAGGTTATGAACATGCAAGATGTGAACAGTTTGATGCACATGAATGT
CTCCTTCatattttggataaaatttcTCCAATAGATACTGAGCAATCAGT
GTTTAAGACTTCAGTTTTACAGTCAATACTGTGCAAAAGTTGCCAGAATG
TTTCTGATCAAACAGTTTTTGAACAAACGTGTCACATCAAATTTCCAAAT
AGAGAAGGTAATTCGATAAAGCAAGAGCTGATTAAGCTAGTAGACGATCC
ATTTGGAGAGCCACTTGATGAATTATATCAGTGCTCTGATTGCTCCGTTC
GAACAAATGCTATTAGATCTAGAACATTATTGCATATATCTGATTTCCTT
ATTATTACATTGGGTATGTTCCGTTACGATCATACAACGCAGAATTCAAG
AAAAGTGGT
Run BLAST on NCBI

protein sequence of TCONS_00055061-protein

>TCONS_00055061-protein ID=TCONS_00055061-protein|Name=TCONS_00055061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
NFGRNVCFFNSVIQALYSVDAFRKFVCEYENSAENDPVINVMKHSFISIT
FSDAPLETYPLLPYFELPGYEHARCEQFDAHECLLHILDKISPIDTEQSV
FKTSVLQSILCKSCQNVSDQTVFEQTCHIKFPNREGNSIKQELIKLVDDP
FGEPLDELYQCSDCSVRTNAIRSRTLLHISDFLIITLGMFRYDHTTQNSR
KV
Run BLAST on NCBI

transcript from alignment at scaffold_248:410453..411061

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055061 ID=TCONS_00055061|Name=TCONS_00055061|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_248:410453..411061 (Clytia hemisphaerica)
ACCACTTTTCTTGAATTCTGCGTTGTATGATCGTAACGGAACATACCCAA
TGTAATAATAAGGAAATCAGATATATGCAATAATGTTCTAGATCTAATAG
CATTTGTTCGAACGGAGCAATCAGAGCACTGATATAATTCATCAAGTGGC
TCTCCAAATGGATCGTCTACTAGCTTAATCAGCTCTTGCTTTATCGAATT
ACCTTCTCTATTTGGAAATTTGATGTGACACGTTTGTTCAAAAACTGTTT
GATCAGAAACATTCTGGCAACTTTTGCACAGTATTGACTGTAAAACTGAA
GTCTTAAACACTGATTGCTCAGTATCTATTGGAgaaattttatccaaaat
atGAAGGAGACATTCATGTGCATCAAACTGTTCACATCTTGCATGTTCAT
AACCTGGCAGCTCAAAATATGGCAATAATGGGTATGTTTCTAATGGGGCA
TCAGAGAACGTTATAGAAATAAATGAGTGTTTCATCACATTTATAACTGG
GTCATTTTCAGCACTATTTTCATATTCACAAACAAACTTCCGAAAGGCAT
CAACTGAATACAATGCTTGaataacagaattgaaaaaacacACATTTCGA
CCAAAATTG

Coding sequence (CDS) from alignment at scaffold_248:410453..411061

>TCONS_00055061 ID=TCONS_00055061|Name=TCONS_00055061|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_248:410453..411061 (Clytia hemisphaerica)
CACTTTTCTTGAATTCTGCGTTGTATGATCGTAACGGAACATACCCAATG
TAATAATAAGGAAATCAGATATATGCAATAATGTTCTAGATCTAATAGCA
TTTGTTCGAACGGAGCAATCAGAGCACTGATATAATTCATCAAGTGGCTC
TCCAAATGGATCGTCTACTAGCTTAATCAGCTCTTGCTTTATCGAATTAC
CTTCTCTATTTGGAAATTTGATGTGACACGTTTGTTCAAAAACTGTTTGA
TCAGAAACATTCTGGCAACTTTTGCACAGTATTGACTGTAAAACTGAAGT
CTTAAACACTGATTGCTCAGTATCTATTGGAgaaattttatccaaaatat
GAAGGAGACATTCATGTGCATCAAACTGTTCACATCTTGCATGTTCATAA
CCTGGCAGCTCAAAATATGGCAATAATGGGTATGTTTCTAATGGGGCATC
AGAGAACGTTATAGAAATAAATGAGTGTTTCATCACATTTATAACTGGGT
CATTTTCAGCACTATTTTCATATTCACAAACAAACTTCCGAAAGGCATCA
ACTGAATACAATGCTTGaataacagaattgaaaaaacacACATTTCGACC
AAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034688XLOC_034688Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055061-proteinTCONS_00055061-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055061-exon-scaffold_248-1491911889:410453..411061TCONS_00055061-exon-scaffold_248-1491911889:410453..411061Clytia hemisphaericaexon
TCONS_00055061-exon-scaffold_248-1510915933:410453..411061TCONS_00055061-exon-scaffold_248-1510915933:410453..411061Clytia hemisphaericaexon
TCONS_00055061-exon-scaffold_248-1575043694:410453..411061TCONS_00055061-exon-scaffold_248-1575043694:410453..411061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:410453..411061 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.886944	0.172982	0.803394	1.57199	0.239219	0.283551	1.14031	0.427016	0.373705	0.555473	0.179719	0.47256	0.176963	0.245038	0.302182	0.324287	0.0665825	0.40947	0.0942841	0.197323	0.343019	0.125484	0.20339	0.0924557	0.761818	1.01986	2.67559	2.20649	0.196888	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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