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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055031 ID=TCONS_00055031|Name=TCONS_00055031|organism=Clytia hemisphaerica|type=transcript|length=4414bpRun BLAST on NCBI protein sequence of TCONS_00055031-protein >TCONS_00055031-protein ID=TCONS_00055031-protein|Name=TCONS_00055031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp MSFTTIPLASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIKRun BLAST on NCBI transcript from alignment at scaffold_248:132812..159471- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055031 ID=TCONS_00055031|Name=TCONS_00055031|organism=Clytia hemisphaerica|type=transcript|length=26660bp|location=Sequence derived from alignment at scaffold_248:132812..159471- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:132812..159471- >TCONS_00055031 ID=TCONS_00055031|Name=TCONS_00055031|organism=Clytia hemisphaerica|type=CDS|length=8673bp|location=Sequence derived from alignment at scaffold_248:132812..159471- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055031 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 1.551e-32 Identity = 108/413 (26.15%), Postives = 191/413 (46.25%), Query Frame = 3
Query: 1008 NSAVKIQRASALIGTAMSFTTIPLASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIKAMLKVFKRFDWNYIFAVGSDDDYGKLGVSDLKQEAGPLEICITKDEYIPYQSDKTGEKVDSXXXXXXXXXXXXXXXLFLYVQGLGDLILQKAAAMKPPLERIWLTSESWNPSAAIHFSSNISRYYNQAVGILSISIKKYPMTELVDYMT-----EQVIENWECNFW---FRKYIQQNKPFECNIDSI---------SLDKNTFICKPDTNGKVKNISVAAVLTDIKKLPGNIDRLIDATTALGHAIHKVV-----RTQCNNSPCYIDTENLETASITKQMFKTNFTNEQGEIISFTKDGNPLNAYYTIENLIFNNETGAFEYVPVGHWALYNNSRTELKLNESAIVW 2180
N + I A++G S + +A+L+ L+ IPQVS ASSSRLLS ++ +KSF RTIP+D++Q AM + + F WN++ + +DDDYG+ G+ ++EA +ICI E I SD+ + + + + + V+ ++ G L K + +IWL SE+W S+ I + +Y++ G + ++K + +++ + V + FW F ++Q+ +D+ ++ +P G SV D L + + + A ++ HA+ + R N C D + +E + K + NFTN GE ++F + G+ L Y+I N + E G+ + VG++ +Y L +NE I+W
Sbjct: 130 NCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDE-----EEIQHVVEVIQNSTAKVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLI----AMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHLQEGAKGPLPVDTFLRGHEESGDRFSNSSTAFRPLCTGDENISSVETPYIDYTHLRISYNVYL-AVYSIAHALQDIYTCLPGRGLFTNGSC-ADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGD-LVGNYSIINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEEKILW 530 HSP 2 Score: 84.3445 bits (207), Expect = 3.712e-16 Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 2
Query: 395 VVLAFSYNACAQCPGQADYDKTESNSDRLTTILEGNFTIQALITMTEERSNKK-----CHYVNREGVVRAFAMNYAIQKFNSNPKYAEYAKIGLQIDDVCQQLPTTMARGIEVISFHRKNSVCRADFLKCDAKPLNSAVKIQRASALIGTAMSFTTIPLASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIKAM 988
V+LA +++ A P Q K + IL G F I + ++ + C N G AM +AI++ NS+P +G +I D C + + + ++ ++ +S+ +F C I A++G S + +A+L+ L+ IPQVS ASSSRLLS ++ +KSF RTIP+D++Q AM
Sbjct: 9 VLLALTWHTSAYGPDQRAQKKGD-------IILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEH-------IPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAM 197 The following BLAST results are available for this feature:
BLAST of TCONS_00055031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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