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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055021 ID=TCONS_00055021|Name=TCONS_00055021|organism=Clytia hemisphaerica|type=transcript|length=2304bpRun BLAST on NCBI protein sequence of TCONS_00055021-protein >TCONS_00055021-protein ID=TCONS_00055021-protein|Name=TCONS_00055021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp MAPRLLHPGPIFALSIIGFCFLTSIITILSWLPPNNTKNILNGVIFHFWVRun BLAST on NCBI transcript from alignment at scaffold_248:37015..53449- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055021 ID=TCONS_00055021|Name=TCONS_00055021|organism=Clytia hemisphaerica|type=transcript|length=16435bp|location=Sequence derived from alignment at scaffold_248:37015..53449- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:37015..53449- >TCONS_00055021 ID=TCONS_00055021|Name=TCONS_00055021|organism=Clytia hemisphaerica|type=CDS|length=14868bp|location=Sequence derived from alignment at scaffold_248:37015..53449- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055021 vs. Swiss-Prot (Human)
Match: ZDHC6 (Palmitoyltransferase ZDHHC6 OS=Homo sapiens GN=ZDHHC6 PE=1 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.596e-96 Identity = 156/380 (41.05%), Postives = 225/380 (59.21%), Query Frame = 1
Query: 91 RLLHPGPIFALSIIGFCFLTSII-TILSWLPPNNTKNILNGVIFHFWVLNILKNFFKASFMGPGHIEFKWKPKRKSDEKLLQYCECCEGYKAPRAHHCKTCKRCVMKMDHHCPWINNCVGHYNHKSFTYFLFFVVVGCSHAAVMMILCIIDHITSKNGYILLRVYEEAMIRMNHYLIIMLF---------FGIGLSVGCTLAVSFLLYYQVKSIVKNRTGIEDWIVEKAISRNKH--IGRTFVYPYDLGKK-ENIKQVVLWSADYTGDGITWPVVKGCDQYTLTIEQLEQKDLKRDRMVPYHVTKSYSGTWCPLMLGCRVLYDCPWSDEARLKVNEGDTFFGSRHKKHWIYGERVLDEDSKEVQEHKLGELRRKKGWVPR 1191
RL H GPI AL +I C ++I ++L + P + T +N ++ W + IL N+F A F+GPG + WKP+ D LQYC+ C+ YKAPR+HHC+ C RCVMKMDHHCPWINNC G+ NH SFT FL +GC HAA + ++ + + + + V + L I+ F F +GL++G T+AV L + Q+K I++N+T IE WI EKA R ++ + FV+PYD+G + N KQV WS GDG+ WPV +GC QY+LTIEQL+QK KR R V Y V + YSG CPL G + + P ++E R+++ +G+ +R ++W+YG+++LD+ E + R +GW PR
Sbjct: 18 RLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILYNYFNAMFVGPGFVPLGWKPEISQDTMYLQYCKVCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGYQNHASFTLFLLLAPLGCIHAAFIFVMTMYTQLYHRLSFGWNTVKIDMSAARRDPLPIVPFGLAAFATTLFALGLALGTTIAVGMLFFIQMKIILRNKTSIESWIEEKAKDRIQYYQLDEVFVFPYDMGSRWRNFKQVFTWSGVPEGDGLEWPVREGCHQYSLTIEQLKQKADKRVRSVRYKVIEDYSGACCPLNKGIKTFFTSPCTEEPRIQLQKGEFILATRGLRYWLYGDKILDDSFIE-------GVSRIRGWFPR 390 The following BLAST results are available for this feature:
BLAST of TCONS_00055021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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