TCONS_00055013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055013
Unique NameTCONS_00055013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055013 ID=TCONS_00055013|Name=TCONS_00055013|organism=Clytia hemisphaerica|type=transcript|length=1960bp
AGGTGCgtaattatgaaaaatagatgaataaaaataaatagaCAGATATG
ACCGTTCCAACCTGATTTATCCTGAGGTATCTGGAAAGTATTAGCAAGGA
CATTATGGCATCAGCTCGGGGTGATATTTTCGTGCAGAATGATTCAGCTT
TTGAGGgtaaaaacaacaaagacaaaatgtGGACAGCATGTTTTGCTGCA
TTTTCCGCTGCCCTGGCTACTGTAAATTTTGGATATGCTCTTGGATTCAC
AGCAGAAGCAGAATTATCTGAACAATTCAATTCAAACAACTCTGCTATTG
ATTTGTCAATGTTGAATGGGAATTCATCCAAAGGTTTCTCTATGTGTGAT
cctgattttgatatttttgcgTCAGTTGTGGCACTAGGCGCTCTAGTTGG
TGGTCTCTTGGCTGGCATACTGATTGATAAGATTGGACGGAAAACTACCA
TTATCTCAACAactattttctactttcttgGATGGGTTCTCATTGCAAAC
AGTTATTGTTATTATGGTAAGCACGGAGGCATTGGTGATCCAGAATTTTG
TCGAAAACACTCAAAACAATGGTATTATAGCATGCTGTATTGTGGACGTG
TTATTACTGGAATTGGTGTGGGTATGAGCTCGCTTGTGGTGCCTGTGTAC
ATTGCGGAAATTGCATCAGCGCGCATGCGTGGAGCACTTGGAAACATCAA
TCAGTTGTCAATCAATTTTGGATTTGTTGTAGCCTACATGACAGGATACA
AACAAAATCTTCCCACAACAGCTTACGTACCAATCGGAATCTCAATTCTC
AACCTTATTCTGATGGTTTTCTTCTTACCTGAGACACCGCGATATCTTTT
GGCAAACAACAGACGACATGATGCCATCCTCGCATTGTATTGGTTAAGAG
GTCCAGACTATCCAGTGGAAGaggaatgttttgaaattgaaggCCATGTT
AATTTTGGCACCCAAGATCAATGGCAATGGAAGGATCTGAAAAGTTCCAC
ATTCTACTGGCCGCTTTTCATTGCacttagtttaatgttttttcaAGAAT
TCAGTGGTATAAATTGTATCTTATTTTACTGTTCTTCCATCTTTCTTGCA
TCTGGGATAGGTGCACGAGTAAAACCTGAAGATCTAGTTAACTCTAAGAA
GATACTGGAAGCTTTAAAGAATGACTCCAAATTGTATGCCTTGTTTGTCT
GCTCAacacttttcatttttactgGAATATCTTGCTTCCTAGTGGACCGA
TATGGACGCCGGAAACTCCTCCTATCCGGTAGTGTGGGAATGTTTATCTC
ACTGATACCAGTCAGTGTGTATGTTTATCACTACCAATTCAACATGAAGC
AAATAATTGATTTCTtatcaaaacaagaaaacacaACATATGCCATTTTA
GCTTTGGTGTGTATACTCAGTTTTATTGCAATGTTCTCAATTGGATGGGG
TCCGCTGCCATGGTTACTCATGTCTGAATTATTCCCAATCAAGACAAGAG
GTATTGCAACTGCCATTGTCACTTTCTCAAACTGGTTATTTGTGTTTACA
ACGACTTCATCTTTCTGTAAAGTCATTTATGGAATCCATATTTATGGTAC
ACTATGGACTTTTGCAATCATTGTAGTTATGGGTTTCTTTTTCACGCTGT
TTTTTGTCCCTGAAACTCAAGGTCGACCACTGGAAGAAGTAGCAGAACTT
TTTATAAGACGGAATTTGCTGCAGGTCAGCATTCCATGGACCAGACACGA
TGCAttataatcaatttttttttaagttgctTGAAGTTGCAGACAAATCC
TtacaataattcaaaaatttgatacAGGATACACTGCTTCAACTTTACCG
TCCTATCtaaaagacaaaatattttttaacaaagattTTCGTACTGAAAA
CATGCCTTAAGGGAAGAAGATTTGTAAACTCTAGTCAAAATTGAAAGATT
CTTTCAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_248:329963..332910+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055013 ID=TCONS_00055013|Name=TCONS_00055013|organism=Clytia hemisphaerica|type=transcript|length=2948bp|location=Sequence derived from alignment at scaffold_248:329963..332910+ (Clytia hemisphaerica)
AGGTGCgtaattatgaaaaatagatgaataaaaataaatagaCAGATATG
ACCGTTCCAACCTGATTTATCCTGAGGTATCTGGAAAGTATTAGCAAGGA
CATTATGGCATCAGCTCGGGGTGATATTTTCGTGCAGAATGATTCAGCTT
TTGAGGgtaaaaacaacaaagacaaaatgtGGACAGCATGTTTTGCTGCA
TTTTCCGCTGCCCTGGCTACTGTAAATTTTGGATATGCTCTTGGATTCAC
AGCAGAAGCAGAATTATCTGAACAATTCAATTCAAACAACTCTGCTATTG
ATTTGTCAATGTTGAATGGGAATTCATCCAAAGGTTTCTCTATGTGTGAT
cctgattttgatatttttgcgGTAAGTCATAACGTTCAGAGAGGTTTCTA
TCCCTCTCTTAAAATGTACTCTCCCTAATTCTGAGAAGGAATAAGTAAGT
TTACACAAGAGTAGGATGAGCTAGATTCGAACGTTCTAGAGGATACTGAT
TTCACCTCTGTTTTTGAGGTCTTGTAAATTACTAGGAATTGCAAATAATG
TTTCTAATATCCTTTTTATTTCAAGTCAGTTGTGGCACTAGGCGCTCTAG
TTGGTGGTCTCTTGGCTGGCATACTGATTGATAAGATTGGACGGAAAACT
ACCATTATCTCAACAactattttctactttcttgGATGGGTTCTCATTGC
AAACAGTTATTGTTATTATGGTAAGCACGGAGGCATTGGTGATCCAGAAT
TTTGTCGAAAACACTCAAAACAATGGTATTATAGCATGCTGTATTGTGGA
CGTGTTATTACTGGAATTGGTGTGGGTATGAGCTCGCTTGTGGTGCCTGT
ATGAGTCTTATTTTAATTAGTTATTTCATTATTCTTGGCTAATATTGAAA
AATGATTGTTCTGATATAAGAAGGATCATAATTATTGTAAAATTGAAGaa
acaaaatatgaaaagaCCCTCATTAATACTTATCAATGGACTGAATAGGT
TCTTACATTTTATTAACCATTCGTTTTACGTTACATGTTCAGGTGTACAT
TGCGGAAATTGCATCAGCGCGCATGCGTGGAGCACTTGGAAACATCAATC
AGTTGTCAATCAATTTTGGATTTGTTGTAGCCTACATGACAGGATACAAA
CAAAATCTTCCCACAACAGGTTTAAATTTTAATATACCATATTTCCTCTT
TTTAACACCACCTTCTAAAAAGTAAGGCACTTAAGAGTGCATTCAGCGAG
TTTAAGtaatttataaatttggtaaACTGATTTTTGTGAACAAGCTGTTA
TCTGTTGAATATTTTAGCCAGAAAAAGCTGAGAATGAAACACAAGAGGga
atttttgagcaaaatatttgGGACTGCTGGTACTTTTAttgtttgatttt
taaccctaaGCTTTTTGAATAGGTCTAACTAAGGAAATAATTTAAATTAa
tgaataataatttttttacaaattatctTCATTTTTTGCAGCTTACGTAC
CAATCGGAANCAGCATAATTTTCATTCTTACAATTTATTTTAACTGAACC
AGATTCCAAATTATATTCACAACAGCTTACGTACCAATCGGAATCTCAAT
TCTCAACCTTATTCTGATGGTTTTCTTCTTACCTGAGACACCGCGATATC
TTTTGGCAAACAACAGACGACATGATGCCATCCTCGCATTGTATTGGTTA
AGAGGTCCAGACTATCCAGTGGAAGaggaatgttttgaaattgaaggCCA
TGTTAATTTTGGTATGTGTTACTTCTACTAAAAAAAGGGTAGGAGGTTTA
TCTTTTGACAAAATGTATAGCTCATTCATTTTGCATGAAAATAACACTGC
TAGCTGATGCAATTTAATGACTTTGAGGTTTTTGGAGGTTAGTTATTTTC
AGTTCCTACTTCATATTTCATCCACTATCCTTTCTTTCTTATTAGGCACC
CAAGATCAATGGCAATGGAAGGATCTGAAAAGTTCCACATTCTACTGGCC
GCTTTTCATTGCacttagtttaatgttttttcaAGAATTCAGTGGTATAA
ATTGTATCTTATTTTACTGTTCTTCCATCTTTCTTGCATCTGGGATAGGT
GCACGAGTAAAACCTGAAGATCTAGTTAACTCTAAGAAGATACTGGAAGC
TTTAAAGAATGACTCCAAATTGTATGCCTTGTTTGTCTGCTCAacacttt
tcatttttactgGAATATCTTGCTTCCTAGTGGACCGATATGGACGCCGG
AAACTCCTCCTATCCGGTAGTGTGGGAATGTTTATCTCACTGATACCAGT
CAGTGTGTATGTTTATCACTACCAATTCAACATGAAGCAAATAATTGATT
TCTtatcaaaacaagaaaacacaACATATGCCATTTTAGCTTTGGTGTGT
ATACTCAGTTTTATTGCAATGTTCTCAATTGGATGGGGTCCGCTGCCATG
GTTACTCATGTCTGAATTATTCCCAATCAAGACAAGAGGTATTGCAACTG
CCATTGTCACTTTCTCAAACTGGTTATTTGTGTTTACAACGACTTCATCT
TTCTGTAAAGTCATTTATGGAATCCATATTTATGGTACACTATGGACTTT
TGCAATCATTGTAGTTATGGGTTTCTTTTTCACGCTGTTTTTTGTCCCTG
AAACTCAAGGTCGACCACTGGAAGAAGTAGCAGAACTTTTTATAAGACGG
AATTTGCTGCAGGTCAGCATTCCATGGACCAGACACGATGCAttataatc
aatttttttttaagttgctTGAAGTTGCAGACAAATCCTtacaataattc
aaaaatttgatacAGGATACACTGCTTCAACTTTACCGTCCTATCtaaaa
gacaaaatattttttaacaaagattTTCGTACTGAAAACATGCCTTAAGG
GAAGAAGATTTGTAAACTCTAGTCAAAATTGAAAGATTCTTTCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034657XLOC_034657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055013-exon-scaffold_248-1491911889:329963..330333TCONS_00055013-exon-scaffold_248-1491911889:329963..330333Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1510915933:329963..330333TCONS_00055013-exon-scaffold_248-1510915933:329963..330333Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1575043694:329963..330333TCONS_00055013-exon-scaffold_248-1575043694:329963..330333Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1491911889:330538..330810TCONS_00055013-exon-scaffold_248-1491911889:330538..330810Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1510915933:330538..330810TCONS_00055013-exon-scaffold_248-1510915933:330538..330810Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1575043694:330538..330810TCONS_00055013-exon-scaffold_248-1575043694:330538..330810Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1491911889:331005..331131TCONS_00055013-exon-scaffold_248-1491911889:331005..331131Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1510915933:331005..331131TCONS_00055013-exon-scaffold_248-1510915933:331005..331131Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1575043694:331005..331131TCONS_00055013-exon-scaffold_248-1575043694:331005..331131Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1491911889:331538..331723TCONS_00055013-exon-scaffold_248-1491911889:331538..331723Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1510915933:331538..331723TCONS_00055013-exon-scaffold_248-1510915933:331538..331723Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1575043694:331538..331723TCONS_00055013-exon-scaffold_248-1575043694:331538..331723Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1491911889:331908..332910TCONS_00055013-exon-scaffold_248-1491911889:331908..332910Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1510915933:331908..332910TCONS_00055013-exon-scaffold_248-1510915933:331908..332910Clytia hemisphaericaexon
TCONS_00055013-exon-scaffold_248-1575043694:331908..332910TCONS_00055013-exon-scaffold_248-1575043694:331908..332910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:329963..332910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0309	10.3069	2.31629	1.21507	8.29366	6.55147	3.84541	7.92894	10.3889	11.3846	15.1363	3.51939	6.13937	3.24071	8.08186	11.6878	10.1789	10.0046	10.7767	11.0452	5.83483	9.91674	19.4999	20.1179	9.18684	9.28966	9.59246	5.27119	19.8734	18.552
Blast
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BLAST of TCONS_00055013 vs. Swiss-Prot (Human)
Match: GTR8 (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 5.630e-56
Identity = 164/514 (31.91%), Postives = 252/514 (49.03%), Query Frame = 3 
Query:  222 VNFGYALGFTAEAELSEQFNSNNSAIDLSMLNGNSSKGFSMCDPDFDIFASXXXXXXXXXXXXXXILIDKIGRKTTIISTTIFYFLGWVLIANSYCYYGKHGGIGDPEFCRKHSKQWYYSMLYCGRVITGIGVGMSSLVVPVYIAEIASARMRGALGNINQLSINFGFVVAYMTGYKQN---LPTTAYVPIGISILNLILMVFFLPETPRYLLANNRRHDAILALYWLRGPDYPVEEECFEIEGHVNFGTQDQWQWKDLKSSTFYWPLFIALSLMFFQEFSGINCILFYCSSIFLASGIGARVKPEDLVNSKKILEALKNDSKLYALFVCSTLFIFTGISCFLVDRYGRRKLL-LSGSVGMFISLIPVSVYVYHYQFNMKQ----------IIDFLSKQE---NTTYAILALVCILSFIAMFSIGWGPLPWLLMSELFPIKTRGIATAIVTFSNWLFVFTTTSSFCKVIYGIHIYGTLWTFAIIVVMGFFFTLFFVPETQGRPLEEVAELFIRR 1712
            ++FG+ALG+++ A  S Q     +A     L+          D     F +VV LGA  GG+L G L+D+ GRK +++  ++ +  G+ +I  +   +                      ML  GR++TG+  G++SLV PVYI+EIA   +RG LG+  QL +  G ++AY+ G+      L     VP  +    ++L++ F+PETPR+LL  +RR +A+ AL +L G +   E+           G +  +    L+    Y P  I +SLM FQ+ SG+N ++FY  +IF                     EA   DS L ++ V     +FT ++  ++DR GRR LL LSG V +F      S   +   F + Q          I   +S Q    +   A LA+  +  FIA F++GWGP+PWLLMSE+FP+  +G+AT I   +NWL  F  T  F  ++  +  YG  W  +   +    FTLF VPET+G+ LE++   F  R
Sbjct:   38 LSFGFALGYSSPAIPSLQ----RAAPPAPRLD----------DAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVW----------------------MLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSL----MLLLMCFMPETPRFLLTQHRRQEAMAALRFLWGSEQGWEDP--------PIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIFE--------------------EAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVF------STSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477
The following BLAST results are available for this feature:
BLAST of TCONS_00055013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTR85.630e-5631.91Solute carrier family 2, facilitated glucose trans... [more]
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