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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054997 ID=TCONS_00054997|Name=TCONS_00054997|organism=Clytia hemisphaerica|type=transcript|length=3418bpRun BLAST on NCBI protein sequence of TCONS_00054997-protein >TCONS_00054997-protein ID=TCONS_00054997-protein|Name=TCONS_00054997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MPFRRKNRPAYAGRRKQRAEQLVTADSECCFCHQGLNEECGLFFNDVEAKRun BLAST on NCBI transcript from alignment at scaffold_248:212849..222150+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054997 ID=TCONS_00054997|Name=TCONS_00054997|organism=Clytia hemisphaerica|type=transcript|length=9302bp|location=Sequence derived from alignment at scaffold_248:212849..222150+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:212849..222150+ >TCONS_00054997 ID=TCONS_00054997|Name=TCONS_00054997|organism=Clytia hemisphaerica|type=CDS|length=19692bp|location=Sequence derived from alignment at scaffold_248:212849..222150+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054997 vs. Swiss-Prot (Human)
Match: G2E3 (G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens GN=G2E3 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 1.967e-54 Identity = 110/281 (39.15%), Postives = 171/281 (60.85%), Query Frame = 1
Query: 268 CCFCHQGLNEECGLFFNDVEAK----IAAHQFCLFFSSGLPQLGEDTEGFDGFLYKDIIKEAQRANKILCKFCQQPGASVGCSLKTCRTSYHYLCGWKQGLQFVFHDCFDSFCKAHCSKQDLSALKDKTQEHL-CPLCLEDVTRHVN-KIIKTPCCKNMFVHRECVQTQANNAG-YFFRCPTCNNQELFQKEMSTFGVYIPQRDAAWE-KNNAFGDLLESYDKCDSAECRCPFGKSHIEDEGDWDLLRCYHCGQSGVHRACLGADVTPEYEFVCRDCNDVV 1086
C FC + +++C + + + K + H +CL SSG+ Q G++ EG GFL +DI KE RA+K+ C C++ GAS+GC C+ SYH+ CG ++ F F F SFC H Q +++ + +E L C +CLE + + I+++PCCKN + HR+C+Q QA NAG +FFRC CNN ++FQKEM G++IP++DA+WE + NA+ +LL+ Y++CD CRC G+ + + W++ RC CG SG H AC + + E + C +C ++
Sbjct: 14 CVFCRK--HDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITS--NNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLAC-SSLRSWEQNWECLECRGII 289 The following BLAST results are available for this feature:
BLAST of TCONS_00054997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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