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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054993 ID=TCONS_00054993|Name=TCONS_00054993|organism=Clytia hemisphaerica|type=transcript|length=2808bp
ACACAACTTTTTAACTTTATAATACTACTATTTTTTGCTGACAACAAATT
TTGTTATATtatgtattatacgtattatatgtTATACAAAAACGTacatc
ttataaaaaagcaaagtATCTAAAAAGTATAATCAATTATTGCAAAGATA
CTTtaccataaaaatattttatttcgtttGTCATCATATCAAAGAAGAAT
GTTTTTCTTCGTATGAATATTTTAGTACTGGACCCTTAAATTCTTGAAAA
GAATGAATTAACGGACGGTGAAATCTTTGGTCAAAAAGAACCTTATCTAA
CAGCCTGACTCAAAGAAGAATCTCTTCATATTGTCGACATTGAGTTGAAC
AGAAAtttagaacttttttaagtttttaaccTTTTCGCTGGTCATTGCAG
ACTAAGCAGATTTTGTGGGTGTTGTGCTTAATAACTTTAAAAACTACAGC
AAAATTAATTCGAGGGTAACTTTAGAAAGGCAGGGTTGAAGAACTTTGTT
GACCTATAAATCATTTAGTTTTGTAACAATATATCAAAGATGATCAAAAG
TATTTTAATAGCTGGCGGTAAATCAAGACTTCAAAGCATCTGCGGTTTTA
CGAAACAGTAATTGCATTTTGATGTTCATAAGTTACTGAAATATCTCATG
ACTTGCCTTAAAACTGATCACTTTTGAGATCAGCAATAAAGGGGTTCTTA
CTGTTTGAGACCTGCCGACAGCTTTTAAAGAGCAGTTCCAGCTCCAAAAT
AGTTTTAAAGTAATACTTATAATTATTCTTAGTTTTTAAGAAAGTTTCTA
CTGAGAAATTCGTAATACCAATTGATGACGAATTTTCACAggaatgaaat
caaatttttatcgcaaattaccaaaaataaagtcaatcaatgaaaattat
tttgagcgggttgcaaattttaggtttttaaatatttcttgtgTTTTTTA
GTATAAAAGTAATTTTGTATTACGGGCCAACAAACTACATGTAGAATAGT
TATAGTATATCATGACGTCACTACAaaggtgtattttacagaacagaACA
AAAAGTGGTCCGATGCATCATTTTCGAAAGTTGTATCGTATGATTTTaat
ggatgaatgaatgaatgatgtCATCTGCAAATCATTTTGTTGGAATTAGT
TTTTAATAGCATCTTAAATTACGCGGTTTCCTTAATCAATATTGAAGATT
TTCGTTCGAGTCAGGTTATTAGAAGCAAAGAGATGGatcaaactttagaa
aaaatatacaaataatTTCACAAGATTTCTATAAAACGAATGCAGGGTCA
CGTGACTTTGCACTGAGGAAAACAACACAAAACAACAAGAATAACCGATA
TTGACATGATAAGATTCATTTGACATTAAATAGAATCACGAGGGCACAAA
TTAACACGAGAGGTCAATAAAGATCAATTCAATAATGAATTAAAGTAATC
TGAGATAAGTCAGCCAAACTTAAACGTGACAAGATTATAGAATGACAACC
ACTGCtttttcttatcaaaaaaataaaaatataaggaGCAAATATCTTCA
TATTCTTCCCTAAAAAAACTAATTCCCTAAAAAAAGTAATTCcctaaaaa
atacataaattttttttccgattcCATTTGCAGGTTATTTACCATGATta
catttaaaaactttttttaggaAGTAGTGATCTTTCTCGACGCATTTTCC
ACGACTAGAGCACAAACCTTGCGACAGTGGACTAGTTTTAGTAGCGTCAA
ATATCCATGCGTCCCACTTATTCTCCTCTTAATTAATCTTGTCATCCGAC
GCCATATATAAAAATAACGATAATCTTTCTCGGTGTACGGTTGTGTCGTG
GATTCCAATAAAAAACTAGTTCGTTGCGAGTCATTCAttacaaaaatatc
tttaaaaaatagttTTGGCTTCTTTTCGTCGTTCCAAAGGGCATAGTTGa
gaaaatttcctcaaaataagGAAAACAGTTGAATCGCCATTCTTTAAAAG
CCAACAAACTATTTCTCCTTATTTATGATATAGTTCCAAACATACCACAT
ACAATAAAGCCATAAAATACAGCATGTCTTATTCTacaaaatattgttta
aaaacAGCATTGTCTGAACNAACCATTCCACAGAAAGTTAAGTATGGGCC
ATTGGCCATCCAAGCACTGGTGCAATGAAGTAAAGATTGACTCAGGATGA
CtcaacatttttgcattttgatcGTCACGTTAAGGCATGGAAAAGTctgc
taaaaaattaaattaaacctgcagaaccttttttttttttttttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
TGAGCAAGAAGGAAggccgaaacaaaatggcgttacgtacaggttaacca
atgttcaagaaaaaagtccTTGAATAAAGCTTTCCAGTGAGTTCTTTGTG
AAAAAAGACTGGGGAGTGAATCTTTGATCTTCTGGGGGTTTCCCCTGAGA
AAATCGAGGAAAGNAATGTTTTCTGGACAACCGTGGATATGAACAGTTGA
ACCTGGTTGAGCACCGCCTACATATCCTTTGAAATTGGACATATACTTTG
AAAATGCTCTCTGGAAAAAGTGGATTTCCATATACGTATTATGTAAATTT
GATCAGTCTGGAGAATTTTTATCGAATATGTATTTATTTGGATGTTTGTT
TTGTATCCAGGTTGTCCCTGGCTGCCTGGAAAGATGGTCCAAACAAGTCA
TCAGAGCCAGGAAACATGTGGGCCAAAattaccaaatgtaaacaaactag
gAGACCNN Run BLAST on NCBI transcript from alignment at scaffold_248:106260..109263+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054993 ID=TCONS_00054993|Name=TCONS_00054993|organism=Clytia hemisphaerica|type=transcript|length=3004bp|location=Sequence derived from alignment at scaffold_248:106260..109263+ (Clytia hemisphaerica)
ACACAACTTTTTAACTTTATAATACTACTATTTTTTGCTGACAACAAATT
TTGTTATATtatgtattatacgtattatatgtTATACAAAAACGTacatc
ttataaaaaagcaaagtATCTAAAAAGTATAATCAATTATTGCAAAGATA
CTTtaccataaaaatattttatttcgtttGTCATCATATCAAAGAAGAAT
GTTTTTCTTCGTATGAATATTTTAGTACTGGACCCTTAAATTCTTGAAAA
GAATGAATTAACGGACGGTGAAATCTTTGGTCAAAAAGAACCTTATCTAA
CAGCCTGACTCAAAGAAGAATCTCTTCATATTGTCGACATTGAGTTGAAC
AGAAAtttagaacttttttaagtttttaaccTTTTCGCTGGTCATTGCAG
ACTAAGCAGATTTTGTGGGTGTTgtgtagcctagaaatctaagccagatt
gattcagtcacttagtaaaatctgatggtaagttgtgactgaataatttt
tcaaggcaaacttaaaattccgtacatcataaaaatcattaaagcgcCGA
TAACACTATATTGCCTTCAGCCGTATCTTGGCcttgtaaaaactggcttg
gttaaccaggctaGGTGTTGTGCTTAATAACTTTAAAAACTACAGCAAAA
TTAATTCGAGGGTAACTTTAGAAAGGCAGGGTTGAAGAACTTTGTTGACC
TATAAATCATTTAGTTTTGTAACAATATATCAAAGATGATCAAAAGTATT
TTAATAGCTGGCGGTAAATCAAGACTTCAAAGCATCTGCGGTTTTACGAA
ACAGTAATTGCATTTTGATGTTCATAAGTTACTGAAATATCTCATGACTT
GCCTTAAAACTGATCACTTTTGAGATCAGCAATAAAGGGGTTCTTACTGT
TTGAGACCTGCCGACAGCTTTTAAAGAGCAGTTCCAGCTCCAAAATAGTT
TTAAAGTAATACTTATAATTATTCTTAGTTTTTAAGAAAGTTTCTACTGA
GAAATTCGTAATACCAATTGATGACGAATTTTCACAggaatgaaatcaaa
tttttatcgcaaattaccaaaaataaagtcaatcaatgaaaattattttg
agcgggttgcaaattttaggtttttaaatatttcttgtgTTTTTTAGTAT
AAAAGTAATTTTGTATTACGGGCCAACAAACTACATGTAGAATAGTTATA
GTATATCATGACGTCACTACAaaggtgtattttacagaacagaACAAAAA
GTGGTCCGATGCATCATTTTCGAAAGTTGTATCGTATGATTTTaatggat
gaatgaatgaatgatgtCATCTGCAAATCATTTTGTTGGAATTAGTTTTT
AATAGCATCTTAAATTACGCGGTTTCCTTAATCAATATTGAAGATTTTCG
TTCGAGTCAGGTTATTAGAAGCAAAGAGATGGatcaaactttagaaaaaa
tatacaaataatTTCACAAGATTTCTATAAAACGAATGCAGGGTCACGTG
ACTTTGCACTGAGGAAAACAACACAAAACAACAAGAATAACCGATATTGA
CATGATAAGATTCATTTGACATTAAATAGAATCACGAGGGCACAAATTAA
CACGAGAGGTCAATAAAGATCAATTCAATAATGAATTAAAGTAATCTGAG
ATAAGTCAGCCAAACTTAAACGTGACAAGATTATAGAATGACAACCACTG
CtttttcttatcaaaaaaataaaaatataaggaGCAAATATCTTCATATT
CTTCCCTAAAAAAACTAATTCCCTAAAAAAAGTAATTCcctaaaaaatac
ataaattttttttccgattcCATTTGCAGGTTATTTACCATGATtacatt
taaaaactttttttaggaAGTAGTGATCTTTCTCGACGCATTTTCCACGA
CTAGAGCACAAACCTTGCGACAGTGGACTAGTTTTAGTAGCGTCAAATAT
CCATGCGTCCCACTTATTCTCCTCTTAATTAATCTTGTCATCCGACGCCA
TATATAAAAATAACGATAATCTTTCTCGGTGTACGGTTGTGTCGTGGATT
CCAATAAAAAACTAGTTCGTTGCGAGTCATTCAttacaaaaatatcttta
aaaaatagttTTGGCTTCTTTTCGTCGTTCCAAAGGGCATAGTTGagaaa
atttcctcaaaataagGAAAACAGTTGAATCGCCATTCTTTAAAAGCCAA
CAAACTATTTCTCCTTATTTATGATATAGTTCCAAACATACCACATACAA
TAAAGCCATAAAATACAGCATGTCTTATTCTacaaaatattgtttaaaaa
cAGCATTGTCTGAACNAACCATTCCACAGAAAGTTAAGTATGGGCCATTG
GCCATCCAAGCACTGGTGCAATGAAGTAAAGATTGACTCAGGATGACtca
acatttttgcattttgatcGTCACGTTAAGGCATGGAAAAGTctgctaaa
aaattaaattaaacctgcagaaccttttttttttttttttttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAG
CAAGAAGGAAggccgaaacaaaatggcgttacgtacaggttaaccaatgt
tcaagaaaaaagtccTTGAATAAAGCTTTCCAGTGAGTTCTTTGTGAAAA
AAGACTGGGGAGTGAATCTTTGATCTTCTGGGGGTTTCCCCTGAGAAAAT
CGAGGAAAGNAATGTTTTCTGGACAACCGTGGATATGAACAGTTGAACCT
GGTTGAGCACCGCCTACATATCCTTTGAAATTGGACATATACTTTGAAAA
TGCTCTCTGGAAAAAGTGGATTTCCATATACGTATTATGTAAATTTGATC
AGTCTGGAGAATTTTTATCGAATATGTATTTATTTGGATGTTTGTTTTGT
ATCCAGGTTGTCCCTGGCTGCCTGGAAAGATGGTCCAAACAAGTCATCAG
AGCCAGGAAACATGTGGGCCAAAattaccaaatgtaaacaaactaggAGA
CCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054993-exon-scaffold_248-1491911889:106260..106677 | TCONS_00054993-exon-scaffold_248-1491911889:106260..106677 | Clytia hemisphaerica | exon |
| TCONS_00054993-exon-scaffold_248-1510915933:106260..106677 | TCONS_00054993-exon-scaffold_248-1510915933:106260..106677 | Clytia hemisphaerica | exon |
| TCONS_00054993-exon-scaffold_248-1575043694:106260..106677 | TCONS_00054993-exon-scaffold_248-1575043694:106260..106677 | Clytia hemisphaerica | exon |
| TCONS_00054993-exon-scaffold_248-1491911889:106874..109263 | TCONS_00054993-exon-scaffold_248-1491911889:106874..109263 | Clytia hemisphaerica | exon |
| TCONS_00054993-exon-scaffold_248-1510915933:106874..109263 | TCONS_00054993-exon-scaffold_248-1510915933:106874..109263 | Clytia hemisphaerica | exon |
| TCONS_00054993-exon-scaffold_248-1575043694:106874..109263 | TCONS_00054993-exon-scaffold_248-1575043694:106874..109263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:106260..109263 + |
Blast
The following BLAST results are available for this feature:
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