TCONS_00054989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054989
Unique NameTCONS_00054989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054989 ID=TCONS_00054989|Name=TCONS_00054989|organism=Clytia hemisphaerica|type=transcript|length=400bp
AGCCCCCCGGATAagaagcatcagttgacccccggacaacccaaactacc
cccggacagagcaaatatatcctccacccggggtgtacgaacattttctg
gaagagcccaatgagCTTGTTTTGGTAAAAGAACACAGTTCAACGAGATA
TGAGAAAACATTGGTATCAAGTAACCGCCAACACGGTTGCTTTGCTTGAA
CTAAATGGCCTGGTATTTTGGTAAGTGGTTTTTTAGTGGGTAAAGGTAAA
CAGACTATCACCGTACTTCCCTAACATCCTGTCTGGAAGTGTTTGGGATT
CGAATACAGTCCATGTGGGTGCAAgactgtgatcgaaaccttcacaccAC
CAATCGGCAAGGCAGTTGTTGgtgttttttttaggtttgttGCAAATTAT
Run BLAST on NCBI

transcript from alignment at scaffold_247:345447..345846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054989 ID=TCONS_00054989|Name=TCONS_00054989|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_247:345447..345846 (Clytia hemisphaerica)
ATAATTTGCaacaaacctaaaaaaaacacCAACAACTGCCTTGCCGATTG
GTggtgtgaaggtttcgatcacagtcTTGCACCCACATGGACTGTATTCG
AATCCCAAACACTTCCAGACAGGATGTTAGGGAAGTACGGTGATAGTCTG
TTTACCTTTACCCACTAAAAAACCACTTACCAAAATACCAGGCCATTTAG
TTCAAGCAAAGCAACCGTGTTGGCGGTTACTTGATACCAATGTTTTCTCA
TATCTCGTTGAACTGTGTTCTTTTACCAAAACAAGctcattgggctcttc
cagaaaatgttcgtacaccccgggtggaggatatatttgctctgtccggg
ggtagtttgggttgtccgggggtcaactgatgcttctTATCCGGGGGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034649XLOC_034649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054989-exon-scaffold_247-1491911889:345447..345846TCONS_00054989-exon-scaffold_247-1491911889:345447..345846Clytia hemisphaericaexon
TCONS_00054989-exon-scaffold_247-1510915933:345447..345846TCONS_00054989-exon-scaffold_247-1510915933:345447..345846Clytia hemisphaericaexon
TCONS_00054989-exon-scaffold_247-1575043694:345447..345846TCONS_00054989-exon-scaffold_247-1575043694:345447..345846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:345447..345846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371495	0	0	1.02879	0	0	0	0.224016	0.156779	0	0.188187	0	0.864743	0.64146	0	0	0.13944	0.285843	0	0.206621	0	1.05118	0	0.19679	0.598286	0	0.26631	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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