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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054979 ID=TCONS_00054979|Name=TCONS_00054979|organism=Clytia hemisphaerica|type=transcript|length=2016bpRun BLAST on NCBI protein sequence of TCONS_00054979-protein >TCONS_00054979-protein ID=TCONS_00054979-protein|Name=TCONS_00054979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MKVCSCFLVLVLLEISRCSLIQNLRKPEPTSITVLQFSPGGADFYERYILRun BLAST on NCBI transcript from alignment at scaffold_247:280586..296135- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054979 ID=TCONS_00054979|Name=TCONS_00054979|organism=Clytia hemisphaerica|type=transcript|length=15550bp|location=Sequence derived from alignment at scaffold_247:280586..296135- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_247:280586..296135- >TCONS_00054979 ID=TCONS_00054979|Name=TCONS_00054979|organism=Clytia hemisphaerica|type=CDS|length=19272bp|location=Sequence derived from alignment at scaffold_247:280586..296135- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054979 vs. Swiss-Prot (Human)
Match: AK1BF (Aldo-keto reductase family 1 member B15 OS=Homo sapiens GN=AKR1B15 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 3.316e-34 Identity = 95/295 (32.20%), Postives = 153/295 (51.86%), Query Frame = 2
Query: 1061 VKLASGYKMPVLGLGT--ALLNETTFDSIKYALQVGYRLFDLAYGYP-LAEVSFA--KAMAESGVARDEVFVVTKLHPRFLGYNETLKAIDLSLENLNISYIDLYLVHS----KECDEYLLACEEG---EPKGDWKDSWRAMEQAVRDGKIRSLGFSNIYHDEIYELLNWSAEPVSVIQNWFD--PLNQDRDTREICTEYNIRYMGFSTLGSRWKLLGLSYNP-ILESDTITGLAGHYDYVVSHVILRWAIHVNVTVIPRSSNPKHISQNFRSLDISLYDVDIEEMNAMESIMKD 1900
V+L++ KMP++GLGT +LL + +++K A+ YR D AY Y EV A + + E V R+++F+V+K+ P F KA + +L++L +SY+D+YL+H K D++ ++G KG + D+W AME+ V +G +++LG SN H +I LLN + N + P + C I +S LGS + +P +LE I +A + + V++R+ I NVTVIP+S P HI +N + D L D EEM + S ++
Sbjct: 5 VELSTKAKMPIVGLGTWRSLLGKVK-EAVKVAIDAEYRHIDCAYFYENQHEVGEAIQEKIQEKAVMREDLFIVSKVWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHWPQGFKTGDDFFPKDDKGNMISGKGTFLDAWEAMEELVDEGLVKALGVSNFNHFQIERLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTTAQVLIRFHIQRNVTVIPKSMTPAHIVENIQVFDFKLSD---EEMATILSFNRN 295 The following BLAST results are available for this feature:
BLAST of TCONS_00054979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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