TCONS_00054922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054922
Unique NameTCONS_00054922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054922 ID=TCONS_00054922|Name=TCONS_00054922|organism=Clytia hemisphaerica|type=transcript|length=372bp
GGCGTGTCTCAGGGTGCAAAACATCAAATTGTATGTAGAATCATGTATTT
TTCAAcgtgttttgataattttgcaCTAAACAGGTTGTGAAGCAAATGCT
ACTTTATGACGAAGATTACGAAATTGATTGGCATCACAAATTAGCAAATC
ATTTCATCAAAAGCTCCGAAAATAATTTCCGTACAGCAGACACTATTTTA
CATCATCTGGTCAAAGGACAAATGAGAGATGAGATTCGTGCTTTCTTTCG
AAACGATCCACGCAGTTTACGGATAGGGCATGCTCGTAAAAGTCTCGTAT
TGAAGGTACCAATtcttcttgtttaatttcttgaATGCACTATTTAAAGT
TTACCTAAAGTTTAAAGTATAT
Run BLAST on NCBI

transcript from alignment at scaffold_246:69064..69435

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054922 ID=TCONS_00054922|Name=TCONS_00054922|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_246:69064..69435 (Clytia hemisphaerica)
ATATACTTTAAACTTTAGGTAAACTTTAAATAGTGCATtcaagaaattaa
acaagaagaATTGGTACCTTCAATACGAGACTTTTACGAGCATGCCCTAT
CCGTAAACTGCGTGGATCGTTTCGAAAGAAAGCACGAATCTCATCTCTCA
TTTGTCCTTTGACCAGATGATGTAAAATAGTGTCTGCTGTACGGAAATTA
TTTTCGGAGCTTTTGATGAAATGATTTGCTAATTTGTGATGCCAATCAAT
TTCGTAATCTTCGTCATAAAGTAGCATTTGCTTCACAACCTGTTTAGtgc
aaaattatcaaaacacgTTGAAAAATACATGATTCTACATACAATTTGAT
GTTTTGCACCCTGAGACACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034609XLOC_034609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054922-exon-scaffold_246-1491911889:69064..69435TCONS_00054922-exon-scaffold_246-1491911889:69064..69435Clytia hemisphaericaexon
TCONS_00054922-exon-scaffold_246-1510915933:69064..69435TCONS_00054922-exon-scaffold_246-1510915933:69064..69435Clytia hemisphaericaexon
TCONS_00054922-exon-scaffold_246-1575043694:69064..69435TCONS_00054922-exon-scaffold_246-1575043694:69064..69435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:69064..69435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43531	0.212248	0	0	0.880559	1.7068	2.53679	1.71639	1.73693	1.47629	1.36663	0.918986	1.44568	0.45099	4.90801	3.00719	1.70668	1.00483	0.231372	2.15496	0.420882	0	1.04125	0.680655	0	0.97845	0	0.178005	3.11076	0.670613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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