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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054918 ID=TCONS_00054918|Name=TCONS_00054918|organism=Clytia hemisphaerica|type=transcript|length=2494bp NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA CACTAAAGCTGAAGCCTGTGAATTTTATACGTCctgtaaagaacattttt ctgaagCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC GAacgaaatctgaaaaaacttttaaaggagAGAATCAAGTCCTCGACAAA TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATAA GTTCTTTCTTAATTTCCAAAACTCGTTACACTCAGCTGAATTTTCGTTAC CTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCTC GGACTTATAAATCCTCTTAtcgtgaaattgaaaattttattccaAGATAT TTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATTT CTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAattaaagatattatt tttctgAGACCGTATTGTTATACTACAAATGATGATCCAGTCGCTTCTCG TGAACTTCATGGATTCAGTGATGCTTCAAAAAGAGCATATGGTTGTTGTG TTTATCTAAGAACTGAATTTGATTCTGGTCATGTAAGCACATCGTTAGTT ACAGGCAAATCTCGTATTGCACCCATAAAGGGTAGTACTGTCCCCAAATT AGAACTGTGTGGGGCTCAAATTTTAACTATCATCATCAATCAAGTGAAGT CTGAACTGAAAGATACACTTTTTATTGAGAAAGTTTATGCTTGGATAGAC TCCACCGTCGCTTACTGTTGGctcaaaaacgaaaataaagtttacaaaca atttgttcaaaatcgagtaaatgagataagaggaaaatcaaaaacttttg tttggaAACTAGTTGACACTTTACAAAATTCTGCTGATGATGTAACCCGG GGTTTATTGTTATCTCAAATTGTACAAAATAAGAGGTGGTTGAATGGCCC CGAATTTTTATCTCTCTCGCAAGAACACTGGCCAGACCTAAAGCCAGGTg ataacttttcaaaacaatcagaACATTCTACAGAAACTGTTGATTTATTT GCTGGGACTGAATTTGAATTCTCTGACCTTAATGATGAAGAGAAAGTTAC TTGTTTAGCTGCTAACACTGCATTTAATCTCTTTTTATTCAACAGTTACA ATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCT GATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACT GGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATT CGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGG GTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTC GTTATCCCGTTTATTTCGGGTGACggccaaagttttaaaattcgTGAGAA ACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATC AATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGA ATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTA CAGACGCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCC CTTCCGTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATT AGCTGAACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAA CGAAAGATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGC AGACAACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATT CGAGGGTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAA CGTGTCGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGG TCCGGTATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAAT CGTGGATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN Run BLAST on NCBI transcript from alignment at scaffold_246:294895..297388- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054918 ID=TCONS_00054918|Name=TCONS_00054918|organism=Clytia hemisphaerica|type=transcript|length=2494bp|location=Sequence derived from alignment at scaffold_246:294895..297388- (Clytia hemisphaerica) NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA
AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT
AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC
CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC
ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA
ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA
CACTAAAGCTGAAGCCTGTGAATTTTATACGTCCTGTAAAGAACATTTTT
CTGAAGCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAACGAAATCTGAAAAAACTTTTAAAGGAGAGAATCAAGTCCTCGACAAA
TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATAA
GTTCTTTCTTAATTTCCAAAACTCGTTACACTCAGCTGAATTTTCGTTAC
CTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCTC
GGACTTATAAATCCTCTTATCGTGAAATTGAAAATTTTATTCCAAGATAT
TTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATTT
CTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAATTAAAGATATTATT
TTTCTGAGACCGTATTGTTATACTACAAATGATGATCCAGTCGCTTCTCG
TGAACTTCATGGATTCAGTGATGCTTCAAAAAGAGCATATGGTTGTTGTG
TTTATCTAAGAACTGAATTTGATTCTGGTCATGTAAGCACATCGTTAGTT
ACAGGCAAATCTCGTATTGCACCCATAAAGGGTAGTACTGTCCCCAAATT
AGAACTGTGTGGGGCTCAAATTTTAACTATCATCATCAATCAAGTGAAGT
CTGAACTGAAAGATACACTTTTTATTGAGAAAGTTTATGCTTGGATAGAC
TCCACCGTCGCTTACTGTTGGCTCAAAAACGAAAATAAAGTTTACAAACA
ATTTGTTCAAAATCGAGTAAATGAGATAAGAGGAAAATCAAAAACTTTTG
TTTGGAAACTAGTTGACACTTTACAAAATTCTGCTGATGATGTAACCCGG
GGTTTATTGTTATCTCAAATTGTACAAAATAAGAGGTGGTTGAATGGCCC
CGAATTTTTATCTCTCTCGCAAGAACACTGGCCAGACCTAAAGCCAGGTG
ATAACTTTTCAAAACAATCAGAACATTCTACAGAAACTGTTGATTTATTT
GCTGGGACTGAATTTGAATTCTCTGACCTTAATGATGAAGAGAAAGTTAC
TTGTTTAGCTGCTAACACTGCATTTAATCTCTTTTTATTCAACAGTTACA
ATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCT
GATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACT
GGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATT
CGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGG
GTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTC
GTTATCCCGTTTATTTCGGGTGACGGCCAAAGTTTTAAAATTCGTGAGAA
ACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATC
AATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGA
ATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTA
CAGACGCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCC
CTTCCGTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATT
AGCTGAACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAA
CGAAAGATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGC
AGACAACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATT
CGAGGGTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAA
CGTGTCGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGG
TCCGGTATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAAT
CGTGGATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054918-exon-scaffold_246-1575043694:294895..297388 | TCONS_00054918-exon-scaffold_246-1575043694:294895..297388 | Clytia hemisphaerica | exon |
TCONS_00054918-exon-scaffold_246-1510915933:294895..297388 | TCONS_00054918-exon-scaffold_246-1510915933:294895..297388 | Clytia hemisphaerica | exon |
TCONS_00054918-exon-scaffold_246-1491911889:294895..297388 | TCONS_00054918-exon-scaffold_246-1491911889:294895..297388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_246 | supercontig | scaffold_246:294895..297388 - |
Blast
The following BLAST results are available for this feature:
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