TCONS_00054918 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054918
Unique Name	TCONS_00054918
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2494

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_246:294895..297388-

transcript sequence

>TCONS_00054918 ID=TCONS_00054918|Name=TCONS_00054918|organism=Clytia hemisphaerica|type=transcript|length=2494bp
NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA
AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT
AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC
CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC
ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA
ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA
CACTAAAGCTGAAGCCTGTGAATTTTATACGTCctgtaaagaacattttt
ctgaagCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAacgaaatctgaaaaaacttttaaaggagAGAATCAAGTCCTCGACAAA
TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATAA
GTTCTTTCTTAATTTCCAAAACTCGTTACACTCAGCTGAATTTTCGTTAC
CTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCTC
GGACTTATAAATCCTCTTAtcgtgaaattgaaaattttattccaAGATAT
TTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATTT
CTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAattaaagatattatt
tttctgAGACCGTATTGTTATACTACAAATGATGATCCAGTCGCTTCTCG
TGAACTTCATGGATTCAGTGATGCTTCAAAAAGAGCATATGGTTGTTGTG
TTTATCTAAGAACTGAATTTGATTCTGGTCATGTAAGCACATCGTTAGTT
ACAGGCAAATCTCGTATTGCACCCATAAAGGGTAGTACTGTCCCCAAATT
AGAACTGTGTGGGGCTCAAATTTTAACTATCATCATCAATCAAGTGAAGT
CTGAACTGAAAGATACACTTTTTATTGAGAAAGTTTATGCTTGGATAGAC
TCCACCGTCGCTTACTGTTGGctcaaaaacgaaaataaagtttacaaaca
atttgttcaaaatcgagtaaatgagataagaggaaaatcaaaaacttttg
tttggaAACTAGTTGACACTTTACAAAATTCTGCTGATGATGTAACCCGG
GGTTTATTGTTATCTCAAATTGTACAAAATAAGAGGTGGTTGAATGGCCC
CGAATTTTTATCTCTCTCGCAAGAACACTGGCCAGACCTAAAGCCAGGTg
ataacttttcaaaacaatcagaACATTCTACAGAAACTGTTGATTTATTT
GCTGGGACTGAATTTGAATTCTCTGACCTTAATGATGAAGAGAAAGTTAC
TTGTTTAGCTGCTAACACTGCATTTAATCTCTTTTTATTCAACAGTTACA
ATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCT
GATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACT
GGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATT
CGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGG
GTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTC
GTTATCCCGTTTATTTCGGGTGACggccaaagttttaaaattcgTGAGAA
ACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATC
AATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGA
ATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTA
CAGACGCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCC
CTTCCGTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATT
AGCTGAACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAA
CGAAAGATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGC
AGACAACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATT
CGAGGGTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAA
CGTGTCGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGG
TCCGGTATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAAT
CGTGGATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN

Run BLAST on NCBI

transcript from alignment at scaffold_246:294895..297388-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054918 ID=TCONS_00054918|Name=TCONS_00054918|organism=Clytia hemisphaerica|type=transcript|length=2494bp|location=Sequence derived from alignment at scaffold_246:294895..297388- (Clytia hemisphaerica)
NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA
AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT
AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC
CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC
ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA
ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA
CACTAAAGCTGAAGCCTGTGAATTTTATACGTCCTGTAAAGAACATTTTT
CTGAAGCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAACGAAATCTGAAAAAACTTTTAAAGGAGAGAATCAAGTCCTCGACAAA
TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATAA
GTTCTTTCTTAATTTCCAAAACTCGTTACACTCAGCTGAATTTTCGTTAC
CTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCTC
GGACTTATAAATCCTCTTATCGTGAAATTGAAAATTTTATTCCAAGATAT
TTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATTT
CTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAATTAAAGATATTATT
TTTCTGAGACCGTATTGTTATACTACAAATGATGATCCAGTCGCTTCTCG
TGAACTTCATGGATTCAGTGATGCTTCAAAAAGAGCATATGGTTGTTGTG
TTTATCTAAGAACTGAATTTGATTCTGGTCATGTAAGCACATCGTTAGTT
ACAGGCAAATCTCGTATTGCACCCATAAAGGGTAGTACTGTCCCCAAATT
AGAACTGTGTGGGGCTCAAATTTTAACTATCATCATCAATCAAGTGAAGT
CTGAACTGAAAGATACACTTTTTATTGAGAAAGTTTATGCTTGGATAGAC
TCCACCGTCGCTTACTGTTGGCTCAAAAACGAAAATAAAGTTTACAAACA
ATTTGTTCAAAATCGAGTAAATGAGATAAGAGGAAAATCAAAAACTTTTG
TTTGGAAACTAGTTGACACTTTACAAAATTCTGCTGATGATGTAACCCGG
GGTTTATTGTTATCTCAAATTGTACAAAATAAGAGGTGGTTGAATGGCCC
CGAATTTTTATCTCTCTCGCAAGAACACTGGCCAGACCTAAAGCCAGGTG
ATAACTTTTCAAAACAATCAGAACATTCTACAGAAACTGTTGATTTATTT
GCTGGGACTGAATTTGAATTCTCTGACCTTAATGATGAAGAGAAAGTTAC
TTGTTTAGCTGCTAACACTGCATTTAATCTCTTTTTATTCAACAGTTACA
ATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCT
GATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACT
GGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATT
CGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGG
GTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTC
GTTATCCCGTTTATTTCGGGTGACGGCCAAAGTTTTAAAATTCGTGAGAA
ACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATC
AATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGA
ATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTA
CAGACGCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCC
CTTCCGTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATT
AGCTGAACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAA
CGAAAGATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGC
AGACAACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATT
CGAGGGTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAA
CGTGTCGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGG
TCCGGTATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAAT
CGTGGATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034605	XLOC_034605	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054918-exon-scaffold_246-1575043694:294895..297388	TCONS_00054918-exon-scaffold_246-1575043694:294895..297388	Clytia hemisphaerica	exon
TCONS_00054918-exon-scaffold_246-1510915933:294895..297388	TCONS_00054918-exon-scaffold_246-1510915933:294895..297388	Clytia hemisphaerica	exon
TCONS_00054918-exon-scaffold_246-1491911889:294895..297388	TCONS_00054918-exon-scaffold_246-1491911889:294895..297388	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_246	supercontig	scaffold_246:294895..297388 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.828761	0.737064	0.104465	0.0411516	0.98341	0.984861	1.76318	2.73149	0.801057	1.25252	1.3985	1.14096	2.21847	1.64949	3.05952	3.81622	1.74844	2.61221	1.03375	0.930641	1.91553	1.68161	0.803584	1.05094	1.43656	2.06727	0.410453	0.17889	0.319111	0.0669873

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00054918 vs. Swiss-Prot (Human)

BLAST of TCONS_00054918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00054918 (transcript) - C. hemisphaerica