TCONS_00054894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054894
Unique NameTCONS_00054894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054894 ID=TCONS_00054894|Name=TCONS_00054894|organism=Clytia hemisphaerica|type=transcript|length=155bp
AGGTGTGCAACAGCTTATGTTTTGTTAGCCGAAGAAGAAGCTACCACCAT
TGAAGAGGCGGAAAATTTGTTCAAGCAGGCGTTAAAAGCAAGTGATACAT
GTTTGGAAGAATATCAAAGTTTATCAGCGGACGAAGATGCTGAGTTGTGT
CATCG
Run BLAST on NCBI

transcript from alignment at scaffold_246:95069..95551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054894 ID=TCONS_00054894|Name=TCONS_00054894|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at scaffold_246:95069..95551+ (Clytia hemisphaerica)
AGGTGTGCAACAGCTTATGTTTTGTTAGCCGAAGAAGAAGCTACCACCAT
TGAAGAGGTGAATAACCAAAACCTTTATAGTGTTTCAATCAGATGCATAG
TGGGCAGAGGAGTATAAAGCCCCTCCTCCTTAAAAATAACACCCCCCTCT
TTCTTAGCTCAACCCACTCTTTTTATTCTACCCCCTCTTTTTCCCAAGCT
TAAGTTCCACCTCCCCACTTTTATGACCTTTTACGCACAAACTCTTACAA
TCTCTAAGTATCCAAAGCTTATTTTTATAACATGAATCTGATGGCAGAAT
GAGtgggaaaaaaacttttgcaaatttccAAATCTTCCCTCTTTCTGTCA
GTTTCTTTTTTTACCATCTTGAATTTCCATTTAAGGCGGAAAATTTGTTC
AAGCAGGCGTTAAAAGCAAGTGATACATGTTTGGAAGAATATCAAAGTTT
ATCAGCGGACGAAGATGCTGAGTTGTGTCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034591XLOC_034591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054894-exon-scaffold_246-1491911889:95069..95125TCONS_00054894-exon-scaffold_246-1491911889:95069..95125Clytia hemisphaericaexon
TCONS_00054894-exon-scaffold_246-1510915933:95069..95125TCONS_00054894-exon-scaffold_246-1510915933:95069..95125Clytia hemisphaericaexon
TCONS_00054894-exon-scaffold_246-1575043694:95069..95125TCONS_00054894-exon-scaffold_246-1575043694:95069..95125Clytia hemisphaericaexon
TCONS_00054894-exon-scaffold_246-1491911889:95454..95551TCONS_00054894-exon-scaffold_246-1491911889:95454..95551Clytia hemisphaericaexon
TCONS_00054894-exon-scaffold_246-1510915933:95454..95551TCONS_00054894-exon-scaffold_246-1510915933:95454..95551Clytia hemisphaericaexon
TCONS_00054894-exon-scaffold_246-1575043694:95454..95551TCONS_00054894-exon-scaffold_246-1575043694:95454..95551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:95069..95551 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top