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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054892 ID=TCONS_00054892|Name=TCONS_00054892|organism=Clytia hemisphaerica|type=transcript|length=2109bp
ACTAAAGAAAAATTCCATAGACGGGAAACGAACAATAGGCGCATTGTTTT
AGCGAGAGGAACTTGAAATATTCGTGCCCAGACCTTCTGAATgggaagaa
aaattcaaaatggcggccagcTCAAGTAATTCAGGCAGTGATTACCCAAT
TGAAGATATCCTTTCCTTGCTTGATGCTGGTTTTTTCGACTGTGAGGAAG
AAGTATCGGAGCAGATTAACTCTATGGAGTCAGATCTTACAGAAACATCA
CAAGTGGCAACATTTGATTGTGAAATATGCGGAAAGATTTGCAAGACAAA
GGGTGGAATAAAGAGACATAAAGCAGCAAAACATCCACACGAAGTGtatt
tggaaaaagttaaagaGAAGGAGGAAAAAACAAAGATTGCAAGTGACAAA
TTGGGATCGATGGATATTATGAGACTAATCAAAGAATCTGCTGAAAGATT
ATCACATGACCAGTGCTATCCAGAGGAGTTTCGATCCCAGtttattgatt
ttgaaattacGCAAAATCAAGGTGATGTAATCTTTAAACAATTGGAGGAG
ATCATCTTCAAATAcaaggaaaataaaaatgacgaaTTCCTTGCTGCTTT
TCGGCGAATAACTTCATCAAAACTTGATCTATTATTTACTGACAAACGAG
TTCATAACCTTCTAATGTTGGAATTTGCTAGCAGTTGTGTAAAGCATCTA
AAGCCAAATCAAAGTGATGCAAATGTTGATATTAGAACTGCACTGGGGAC
AAAGGAGAAGGCAGCCCTCAATTACATAGCCGGACATGCAGTCCACAAAA
TCTATGCAAAACTACGCACCAGTAAACATTGGCGAacagatatttttcaa
aaatcatttaatcttttgaagaaattcaaaattgaacCAACTGACATGGA
AGAGCATGCTTTGATTAAAGCAAAAAATAGAGGTGGATTGTGGTGTGTCT
CCAAATTAACGGTACAAGTTTTTGAACAAGCTGAACTTTTGTTCACAAGT
GAAACATGTAGACATGTCACAAGGGTTGACTATAAAGCAATGGTcagaaa
tttaatgaaaaacttATTGGTTAAAAAGTATTGGGAACAGCTTTTAAGTG
ATTCACCAGAAATAGATACAGATCTTGGGAAAGACTTACTTGATCAACTA
CTCTCTCTTTACCTCAAAATCAGAGGATTTTCATATGCAAAAAGCATAAG
GGAAAAACACAAGTGTAAAAGCAAGTCAACTCAAAAACACTCTTTGAgag
caaatttgaaaaaatcagagaaagagGAGCCATAAATATATTTATAACAA
TAATTATATAATAATATACATATATTTCATTTTGTATTGGTTTGTTTTAA
CTTGTCTTGAGGTCTATACTATAATAATGTATCTGCATTTTTGATAATAA
TGTTGGACTTTTTCATTTGCATTATATTGTATGAAATGATTTTACAATTT
GGACAAGCCAAATTTCTTTTTACAGAGTTACTGTTGCTGTTTATTATGCT
TTTCACCAAGGTTTTTATAACTTGAATTTTTCATTCtgattcaaaagctt
tttctgtttttatagtttcttgtatatttttttatttaccacaaaaaaca
aaagttgtaATTACATGAATTTATTATATTTAAAGTAATTTATTTTATGC
TGCCAATGTATTTTCCATATGtttccttttaaaattttcactgaaGGAAT
CTTAGAACTGCCTAACTTTCCAGAAAGCCGTTTATCATTCTGACTGATCT
GATTGGTcgatttgttattttttattttgaaattgtaaAATCCAACTGTC
TGATTGCTCAAATTAACTCAAATGATAAACAGCTTTCTGGAAAGTTAAGT
AGTTCTTCGTCATATGTTTGGTATTTTGAGTACTAAGCAGATGCCAAAGT
ACACAATGGGGAAAACTTGATACCATTAGTCTTCAAAGTAAAAACCAAAT
TCTATGGCTTTACTGTGAAAGTTGtacaatttttatttctttcaaatGCC
TAAATTCCCCATATTCTTtatattatgttaatttatAAAGCGTTTTTTAG
GCAAATATTTTGGTCAagaatttttgaattattgtgTTATCAGTATCACT
GATTTATCG Run BLAST on NCBI protein sequence of TCONS_00054892-protein >TCONS_00054892-protein ID=TCONS_00054892-protein|Name=TCONS_00054892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MAASSSNSGSDYPIEDILSLLDAGFFDCEEEVSEQINSMESDLTETSQVA
TFDCEICGKICKTKGGIKRHKAAKHPHEVYLEKVKEKEEKTKIASDKLGS
MDIMRLIKESAERLSHDQCYPEEFRSQFIDFEITQNQGDVIFKQLEEIIF
KYKENKNDEFLAAFRRITSSKLDLLFTDKRVHNLLMLEFASSCVKHLKPN
QSDANVDIRTALGTKEKAALNYIAGHAVHKIYAKLRTSKHWRTDIFQKSF
NLLKKFKIEPTDMEEHALIKAKNRGGLWCVSKLTVQVFEQAELLFTSETC
RHVTRVDYKAMVRNLMKNLLVKKYWEQLLSDSPEIDTDLGKDLLDQLLSL
YLKIRGFSYAKSIREKHKCKSKSTQKHSLRANLKKSEKEEP Run BLAST on NCBI transcript from alignment at scaffold_246:51066..53487+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054892 ID=TCONS_00054892|Name=TCONS_00054892|organism=Clytia hemisphaerica|type=transcript|length=2422bp|location=Sequence derived from alignment at scaffold_246:51066..53487+ (Clytia hemisphaerica)
ACTAAAGAAAAATTCCATAGACGGGAAACGAACAATAGGCGCATTGTTTT
AGCGAGAGGAACTTGAAATATTCGTGCCCAGACCTTCTGAATgggaagaa
aaattcaaaatggcggccagcTCAAGTAATTCAGGCAGTGATTACCCAAT
TGAAGATATCCTTTCCTTGCTTGATGCTGGTTTTTTCGACTGTGAGGAAG
AAGTATCGGAGCAGATTAACTCTATGGAGTCAGATGTAAGTTCCAATGCa
aatctttgttcttttttcacACGTAAACCTTCCCTTTATACCAATAATAT
TTGCTTTacttttgactgcttttaaggTGTAAGGGTGCATGCAATAGTTT
CTATACTTATGTTTGGTTATGATGTAGGACACCCAAATCAAGCATAGAGC
AACATAATCCAGacctttcaaaaatcttttctttcaATCACTTTAACAAT
CAAGTTTTCTTGATTCTTTCAGTTTCAATGATGGAAAATACTTGGAAAAT
TAACTAATTGAAAGTTAATAATtcaacttttgttttctttgtctACAGCT
TACAGAAACATCACAAGTGGCAACATTTGATTGTGAAATATGCGGAAAGA
TTTGCAAGACAAAGGGTGGAATAAAGAGACATAAAGCAGCAAAACATCCA
CACGAAGTGtatttggaaaaagttaaagaGAAGGAGGAAAAAACAAAGAT
TGCAAGTGACAAATTGGGATCGATGGATATTATGAGACTAATCAAAGAAT
CTGCTGAAAGATTATCACATGACCAGTGCTATCCAGAGGAGTTTCGATCC
CAGtttattgattttgaaattacGCAAAATCAAGGTGATGTAATCTTTAA
ACAATTGGAGGAGATCATCTTCAAATAcaaggaaaataaaaatgacgaaT
TCCTTGCTGCTTTTCGGCGAATAACTTCATCAAAACTTGATCTATTATTT
ACTGACAAACGAGTTCATAACCTTCTAATGTTGGAATTTGCTAGCAGTTG
TGTAAAGCATCTAAAGCCAAATCAAAGTGATGCAAATGTTGATATTAGAA
CTGCACTGGGGACAAAGGAGAAGGCAGCCCTCAATTACATAGCCGGACAT
GCAGTCCACAAAATCTATGCAAAACTACGCACCAGTAAACATTGGCGAac
agatatttttcaaaaatcatttaatcttttgaagaaattcaaaattgaac
CAACTGACATGGAAGAGCATGCTTTGATTAAAGCAAAAAATAGAGGTGGA
TTGTGGTGTGTCTCCAAATTAACGGTACAAGTTTTTGAACAAGCTGAACT
TTTGTTCACAAGTGAAACATGTAGACATGTCACAAGGGTTGACTATAAAG
CAATGGTcagaaatttaatgaaaaacttATTGGTTAAAAAGTATTGGGAA
CAGCTTTTAAGTGATTCACCAGAAATAGATACAGATCTTGGGAAAGACTT
ACTTGATCAACTACTCTCTCTTTACCTCAAAATCAGAGGATTTTCATATG
CAAAAAGCATAAGGGAAAAACACAAGTGTAAAAGCAAGTCAACTCAAAAA
CACTCTTTGAgagcaaatttgaaaaaatcagagaaagagGAGCCATAAAT
ATATTTATAACAATAATTATATAATAATATACATATATTTCATTTTGTAT
TGGTTTGTTTTAACTTGTCTTGAGGTCTATACTATAATAATGTATCTGCA
TTTTTGATAATAATGTTGGACTTTTTCATTTGCATTATATTGTATGAAAT
GATTTTACAATTTGGACAAGCCAAATTTCTTTTTACAGAGTTACTGTTGC
TGTTTATTATGCTTTTCACCAAGGTTTTTATAACTTGAATTTTTCATTCt
gattcaaaagctttttctgtttttatagtttcttgtatatttttttattt
accacaaaaaacaaaagttgtaATTACATGAATTTATTATATTTAAAGTA
ATTTATTTTATGCTGCCAATGTATTTTCCATATGtttccttttaaaattt
tcactgaaGGAATCTTAGAACTGCCTAACTTTCCAGAAAGCCGTTTATCA
TTCTGACTGATCTGATTGGTcgatttgttattttttattttgaaattgta
aAATCCAACTGTCTGATTGCTCAAATTAACTCAAATGATAAACAGCTTTC
TGGAAAGTTAAGTAGTTCTTCGTCATATGTTTGGTATTTTGAGTACTAAG
CAGATGCCAAAGTACACAATGGGGAAAACTTGATACCATTAGTCTTCAAA
GTAAAAACCAAATTCTATGGCTTTACTGTGAAAGTTGtacaatttttatt
tctttcaaatGCCTAAATTCCCCATATTCTTtatattatgttaatttatA
AAGCGTTTTTTAGGCAAATATTTTGGTCAagaatttttgaattattgtgT
TATCAGTATCACTGATTTATCG Coding sequence (CDS) from alignment at scaffold_246:51066..53487+ >TCONS_00054892 ID=TCONS_00054892|Name=TCONS_00054892|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_246:51066..53487+ (Clytia hemisphaerica)
atggcggccagcTCAAGTAATTCAGGCAGTGATTACCCAATTGAAGATAT
CCTTTCCTTGCTTGATGCTGGTTTTTTCGACTGTGAGGAAGAAGTATCGG
AGCAGATTAACTCTATGGAGTCAGATCTTACAGAAACATCACAAGTGGCA
ACATTTGATTGTGAAATATGCGGAAAGATTTGCAAGACAAAGGGTGGAAT
AAAGAGACATAAAGCAGCAAAACATCCACACGAAGTGtatttggaaaaag
ttaaagaGAAGGAGGAAAAAACAAAGATTGCAAGTGACAAATTGGGATCG
ATGGATATTATGAGACTAATCAAAGAATCTGCTGAAAGATTATCACATGA
CCAGTGCTATCCAGAGGAGTTTCGATCCCAGtttattgattttgaaatta
cGCAAAATCAAGGTGATGTAATCTTTAAACAATTGGAGGAGATCATCTTC
AAATAcaaggaaaataaaaatgacgaaTTCCTTGCTGCTTTTCGGCGAAT
AACTTCATCAAAACTTGATCTATTATTTACTGACAAACGAGTTCATAACC
TTCTAATGTTGGAATTTGCTAGCAGTTGTGTAAAGCATCTAAAGCCAAAT
CAAAGTGATGCAAATGTTGATATTAGAACTGCACTGGGGACAAAGGAGAA
GGCAGCCCTCAATTACATAGCCGGACATGCAGTCCACAAAATCTATGCAA
AACTACGCACCAGTAAACATTGGCGAacagatatttttcaaaaatcattt
aatcttttgaagaaattcaaaattgaacCAACTGACATGGAAGAGCATGC
TTTGATTAAAGCAAAAAATAGAGGTGGATTGTGGTGTGTCTCCAAATTAA
CGGTACAAGTTTTTGAACAAGCTGAACTTTTGTTCACAAGTGAAACATGT
AGACATGTCACAAGGGTTGACTATAAAGCAATGGTcagaaatttaatgaa
aaacttATTGGTTAAAAAGTATTGGGAACAGCTTTTAAGTGATTCACCAG
AAATAGATACAGATCTTGGGAAAGACTTACTTGATCAACTACTCTCTCTT
TACCTCAAAATCAGAGGATTTTCATATGCAAAAAGCATAAGGGAAAAACA
CAAGTGTAAAAGCAAGTCAACTCAAAAACACTCTTTGAgagcaaatttga
aaaaatcagagaaagagGAGCCATAAatggcggccagcTCAAGTAATTCA
GGCAGTGATTACCCAATTGAAGATATCCTTTCCTTGCTTGATGCTGGTTT
TTTCGACTGTGAGGAAGAAGTATCGGAGCAGATTAACTCTATGGAGTCAG
ATCTTACAGAAACATCACAAGTGGCAACATTTGATTGTGAAATATGCGGA
AAGATTTGCAAGACAAAGGGTGGAATAAAGAGACATAAAGCAGCAAAACA
TCCACACGAAGTGtatttggaaaaagttaaagaGAAGGAGGAAAAAACAA
AGATTGCAAGTGACAAATTGGGATCGATGGATATTATGAGACTAATCAAA
GAATCTGCTGAAAGATTATCACATGACCAGTGCTATCCAGAGGAGTTTCG
ATCCCAGtttattgattttgaaattacGCAAAATCAAGGTGATGTAATCT
TTAAACAATTGGAGGAGATCATCTTCAAATAcaaggaaaataaaaatgac
gaaTTCCTTGCTGCTTTTCGGCGAATAACTTCATCAAAACTTGATCTATT
ATTTACTGACAAACGAGTTCATAACCTTCTAATGTTGGAATTTGCTAGCA
GTTGTGTAAAGCATCTAAAGCCAAATCAAAGTGATGCAAATGTTGATATT
AGAACTGCACTGGGGACAAAGGAGAAGGCAGCCCTCAATTACATAGCCGG
ACATGCAGTCCACAAAATCTATGCAAAACTACGCACCAGTAAACATTGGC
GAacagatatttttcaaaaatcatttaatcttttgaagaaattcaaaatt
gaacCAACTGACATGGAAGAGCATGCTTTGATTAAAGCAAAAAATAGAGG
TGGATTGTGGTGTGTCTCCAAATTAACGGTACAAGTTTTTGAACAAGCTG
AACTTTTGTTCACAAGTGAAACATGTAGACATGTCACAAGGGTTGACTAT
AAAGCAATGGTcagaaatttaatgaaaaacttATTGGTTAAAAAGTATTG
GGAACAGCTTTTAAGTGATTCACCAGAAATAGATACAGATCTTGGGAAAG
ACTTACTTGATCAACTACTCTCTCTTTACCTCAAAATCAGAGGATTTTCA
TATGCAAAAAGCATAAGGGAAAAACACAAGTGTAAAAGCAAGTCAACTCA
AAAACACTCTTTGAgagcaaatttgaaaaaatcagagaaagagGAGCCAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054892-exon-scaffold_246-1491911889:51066..51300 | TCONS_00054892-exon-scaffold_246-1491911889:51066..51300 | Clytia hemisphaerica | exon |
| TCONS_00054892-exon-scaffold_246-1510915933:51066..51300 | TCONS_00054892-exon-scaffold_246-1510915933:51066..51300 | Clytia hemisphaerica | exon |
| TCONS_00054892-exon-scaffold_246-1575043694:51066..51300 | TCONS_00054892-exon-scaffold_246-1575043694:51066..51300 | Clytia hemisphaerica | exon |
| TCONS_00054892-exon-scaffold_246-1491911889:51614..53487 | TCONS_00054892-exon-scaffold_246-1491911889:51614..53487 | Clytia hemisphaerica | exon |
| TCONS_00054892-exon-scaffold_246-1510915933:51614..53487 | TCONS_00054892-exon-scaffold_246-1510915933:51614..53487 | Clytia hemisphaerica | exon |
| TCONS_00054892-exon-scaffold_246-1575043694:51614..53487 | TCONS_00054892-exon-scaffold_246-1575043694:51614..53487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:51066..53487 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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