|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054881 ID=TCONS_00054881|Name=TCONS_00054881|organism=Clytia hemisphaerica|type=transcript|length=1932bp
CTGTATAAGAAAAACATTTGCAATGTTTGATTTGGTTTACAATGTTTTCA
GTAGTTAATGCCATTAATGAGaataaaattggtcaaaattaaaaacaacc
TGCAAAATACCTGTAAAATAAACAAAGCTTCTTCTGTTTGGAAACTCTAA
AAATAACCAAACGCAGTCATTATAAAAATTAAACATGAACAacctgaatt
ttcaaatttcttaaaCTTTTTGGTCGAATTCCATTATGGTCGTATTGTGA
ATCAACATGGATCCATTCCAAGGCTCTGAAAGGTGACagtaatttacaaa
aatgaaagcCAGCTGCTATCTTCAAGATATAGTCTGTAGGTGTTCTCATC
ATTGGTGCTTGAAGGACGGTCTGTGTTTTGTCGGCGTTATCTTTGTACTT
CAAATAGGTCCATATCCACAGTGGACCAATATTGTAAGGACCAAGATCTT
TACCAATTACCAGTTTCTTGCCGTATTTCTGATATCTACGAAGTGCATCA
GGATTTGTTTTCGAGAGAGCCCAGTTCAATGCTTGTTGATTGATTTCACC
ACAACGATTACCAACTTCGTCAGTTTGATGAAAATCAGCTTGTTTATTTC
CTGCTGCTTTTTGTACAGATTGTCGTGACATGAGTTTGGCTTTCATTTCA
ACTGCACCAACTTCATATTTGCCAGTATCCAAAGAGTTCAAACGGTGATA
ATAGTTCTCGGTAACTGTCCCGCTGTAAAGCATGCATTTCTCTTCGGTTG
TTGGTGAAGGACAGGAGTTGTTGATTGCTGGTAAGGGGTCTACGGGAAAG
AATGTCCAAGCCCGATGAAAGTTGTCCTCTGAGGTTATATCAGCGTTGAA
TGCTGTTAAATTTCCACTCATTAGTTTTTGAGCGTATGGAACCCATTCTG
AGCCTTTCAAACAAGTTGGCCGGTCATCGTTAACCAGTGTTTTATTGTAA
CAAGGTCGTTTCAAGTTATAGCTTCCTTCAATTTCCATCGCTTCAGAAAA
CGGTTTCATAAAATCATCTGTGTAATCAAGAATGTCTTGGATATTTGACC
AAGGATTGTCAGAACCTTCCAGTTTTGAGATGAAGCTTGCCATGACATTG
CCAGTGATGACATGACCAACTACCTCAGGGACTTCTGGATGAAGATCAGT
TGAAGTTACAGAGCTTGGTATCATTGAGAAATCCATGAAACTTGAATGAC
TCATACCTCTCAAGGCAACTACAGGGAACATTCCTGATTGACTTTTGACA
ATGTTTTTCTTCGCATGCCAGTAACCTTCAGCACTTCTACTAACTCTCAA
AAGTCCATCAAGTTCTCCATTGAGAGTAAGGGTTGGAACATCATAATCGA
ATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCAACAGAACT
GCTCCCATCAATATTTGACctttgacaaagttcgatttTCCTTTGGCATA
GATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATAAATCTGAT
CTCCTGGAAAATTGTGTTTGGTTTTCAGCATTTTCAAGGTGTACTGGACA
TAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAATTCAGGAAG
ACCAACCCAAGCTTTAAAGCCTTGAGTAGCAGCTGCTTTCTGAAATTCTT
GAGCGATTGTTCGATACGCTTCAGGTGAACATCGCATACCGTGAATCCAA
ATTACAGCGATAGGTTTTCCACCAGCAGCTGTCGGTGGTGGTTCAAGGTA
GATTGGACGAGCATTGATCTGATGGAGAATAACAGTGATTGCCAAAATGC
TTGCTACAAGATTGTTGATACTCATTTTCACTTATTTCACTCTCGTCTGT
AATAAGAGAAAAGTGGGTAGGTCAAAGAAGAATCGTCTATCTAGATTTTA
CTTCATTATGGAAGAAAGTATGTAACAAGAAG Run BLAST on NCBI protein sequence of TCONS_00054881-protein >TCONS_00054881-protein ID=TCONS_00054881-protein|Name=TCONS_00054881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MSINNLVASILAITVILHQINARPIYLEPPPTAAGGKPIAVIWIHGMRCS
PEAYRTIAQEFQKAAATQGFKAWVGLPEFFLDVPEPILMTRYVQYTLKML
KTKHNFPGDQIYLAAHSLGGVMTQIYAKGKSNFVKGQILMGAVLLRNTRR
ITGSGQTKFDYDVPTLTLNGELDGLLRVSRSAEGYWHAKKNIVKSQSGMF
PVVALRGMSHSSFMDFSMIPSSVTSTDLHPEVPEVVGHVITGNVMASFIS
KLEGSDNPWSNIQDILDYTDDFMKPFSEAMEIEGSYNLKRPCYNKTLVND
DRPTCLKGSEWVPYAQKLMSGNLTAFNADITSEDNFHRAWTFFPVDPLPA
INNSCPSPTTEEKCMLYSGTVTENYYHRLNSLDTGKYEVGAVEMKAKLMS
RQSVQKAAGNKQADFHQTDEVGNRCGEINQQALNWALSKTNPDALRRYQK
YGKKLVIGKDLGPYNIGPLWIWTYLKYKDNADKTQTVLQAPMMRTPTDYI
LKIAAGFHFCKLLSPFRALEWIHVDSQYDHNGIRPKSLRNLKIQVVHV Run BLAST on NCBI transcript from alignment at scaffold_245:746450..748381 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054881 ID=TCONS_00054881|Name=TCONS_00054881|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at scaffold_245:746450..748381 (Clytia hemisphaerica)
CTTCTTGTTACATACTTTCTTCCATAATGAAGTAAAATCTAGATAGACGA
TTCTTCTTTGACCTACCCACTTTTCTCTTATTACAGACGAGAGTGAAATA
AGTGAAAATGAGTATCAACAATCTTGTAGCAAGCATTTTGGCAATCACTG
TTATTCTCCATCAGATCAATGCTCGTCCAATCTACCTTGAACCACCACCG
ACAGCTGCTGGTGGAAAACCTATCGCTGTAATTTGGATTCACGGTATGCG
ATGTTCACCTGAAGCGTATCGAACAATCGCTCAAGAATTTCAGAAAGCAG
CTGCTACTCAAGGCTTTAAAGCTTGGGTTGGTCTTCCTGAATTCTTCCTT
GATGTACCAGAGCCTATATTGATGACCCGTTATGTCCAGTACACCTTGAA
AATGCTGAAAACCAAACACAATTTTCCAGGAGATCAGATTTATTTGGCTG
CTCATTCTTTGGGAGGTGTCATGACACAAATCTATGCCAAAGGAaaatcg
aactttgtcaaagGTCAAATATTGATGGGAGCAGTTCTGTTGAGAAACAC
AAGAAGAATCACAGGTTCAGGACAAACAAAATTCGATTATGATGTTCCAA
CCCTTACTCTCAATGGAGAACTTGATGGACTTTTGAGAGTTAGTAGAAGT
GCTGAAGGTTACTGGCATGCGAAGAAAAACATTGTCAAAAGTCAATCAGG
AATGTTCCCTGTAGTTGCCTTGAGAGGTATGAGTCATTCAAGTTTCATGG
ATTTCTCAATGATACCAAGCTCTGTAACTTCAACTGATCTTCATCCAGAA
GTCCCTGAGGTAGTTGGTCATGTCATCACTGGCAATGTCATGGCAAGCTT
CATCTCAAAACTGGAAGGTTCTGACAATCCTTGGTCAAATATCCAAGACA
TTCTTGATTACACAGATGATTTTATGAAACCGTTTTCTGAAGCGATGGAA
ATTGAAGGAAGCTATAACTTGAAACGACCTTGTTACAATAAAACACTGGT
TAACGATGACCGGCCAACTTGTTTGAAAGGCTCAGAATGGGTTCCATACG
CTCAAAAACTAATGAGTGGAAATTTAACAGCATTCAACGCTGATATAACC
TCAGAGGACAACTTTCATCGGGCTTGGACATTCTTTCCCGTAGACCCCTT
ACCAGCAATCAACAACTCCTGTCCTTCACCAACAACCGAAGAGAAATGCA
TGCTTTACAGCGGGACAGTTACCGAGAACTATTATCACCGTTTGAACTCT
TTGGATACTGGCAAATATGAAGTTGGTGCAGTTGAAATGAAAGCCAAACT
CATGTCACGACAATCTGTACAAAAAGCAGCAGGAAATAAACAAGCTGATT
TTCATCAAACTGACGAAGTTGGTAATCGTTGTGGTGAAATCAATCAACAA
GCATTGAACTGGGCTCTCTCGAAAACAAATCCTGATGCACTTCGTAGATA
TCAGAAATACGGCAAGAAACTGGTAATTGGTAAAGATCTTGGTCCTTACA
ATATTGGTCCACTGTGGATATGGACCTATTTGAAGTACAAAGATAACGCC
GACAAAACACAGACCGTCCTTCAAGCACCAATGATGAGAACACCTACAGA
CTATATCTTGAAGATAGCAGCTGgctttcatttttgtaaattactGTCAC
CTTTCAGAGCCTTGGAATGGATCCATGTTGATTCACAATACGACCATAAT
GGAATTCGACCAAAAAGtttaagaaatttgaaaattcaggtTGTTCATGT
TTAATTTTTATAATGACTGCGTTTGGTTATTTTTAGAGTTTCCAAACAGA
AGAAGCTTTGTTTATTTTACAGGTATTTTGCAggttgtttttaattttga
ccaattttattCTCATTAATGGCATTAACTACTGAAAACATTGTAAACCA
AATCAAACATTGCAAATGTTTTTCTTATACAG Coding sequence (CDS) from alignment at scaffold_245:746450..748381 >TCONS_00054881 ID=TCONS_00054881|Name=TCONS_00054881|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_245:746450..748381 (Clytia hemisphaerica)
ATGAGTATCAACAATCTTGTAGCAAGCATTTTGGCAATCACTGTTATTCT
CCATCAGATCAATGCTCGTCCAATCTACCTTGAACCACCACCGACAGCTG
CTGGTGGAAAACCTATCGCTGTAATTTGGATTCACGGTATGCGATGTTCA
CCTGAAGCGTATCGAACAATCGCTCAAGAATTTCAGAAAGCAGCTGCTAC
TCAAGGCTTTAAAGCTTGGGTTGGTCTTCCTGAATTCTTCCTTGATGTAC
CAGAGCCTATATTGATGACCCGTTATGTCCAGTACACCTTGAAAATGCTG
AAAACCAAACACAATTTTCCAGGAGATCAGATTTATTTGGCTGCTCATTC
TTTGGGAGGTGTCATGACACAAATCTATGCCAAAGGAaaatcgaactttg
tcaaagGTCAAATATTGATGGGAGCAGTTCTGTTGAGAAACACAAGAAGA
ATCACAGGTTCAGGACAAACAAAATTCGATTATGATGTTCCAACCCTTAC
TCTCAATGGAGAACTTGATGGACTTTTGAGAGTTAGTAGAAGTGCTGAAG
GTTACTGGCATGCGAAGAAAAACATTGTCAAAAGTCAATCAGGAATGTTC
CCTGTAGTTGCCTTGAGAGGTATGAGTCATTCAAGTTTCATGGATTTCTC
AATGATACCAAGCTCTGTAACTTCAACTGATCTTCATCCAGAAGTCCCTG
AGGTAGTTGGTCATGTCATCACTGGCAATGTCATGGCAAGCTTCATCTCA
AAACTGGAAGGTTCTGACAATCCTTGGTCAAATATCCAAGACATTCTTGA
TTACACAGATGATTTTATGAAACCGTTTTCTGAAGCGATGGAAATTGAAG
GAAGCTATAACTTGAAACGACCTTGTTACAATAAAACACTGGTTAACGAT
GACCGGCCAACTTGTTTGAAAGGCTCAGAATGGGTTCCATACGCTCAAAA
ACTAATGAGTGGAAATTTAACAGCATTCAACGCTGATATAACCTCAGAGG
ACAACTTTCATCGGGCTTGGACATTCTTTCCCGTAGACCCCTTACCAGCA
ATCAACAACTCCTGTCCTTCACCAACAACCGAAGAGAAATGCATGCTTTA
CAGCGGGACAGTTACCGAGAACTATTATCACCGTTTGAACTCTTTGGATA
CTGGCAAATATGAAGTTGGTGCAGTTGAAATGAAAGCCAAACTCATGTCA
CGACAATCTGTACAAAAAGCAGCAGGAAATAAACAAGCTGATTTTCATCA
AACTGACGAAGTTGGTAATCGTTGTGGTGAAATCAATCAACAAGCATTGA
ACTGGGCTCTCTCGAAAACAAATCCTGATGCACTTCGTAGATATCAGAAA
TACGGCAAGAAACTGGTAATTGGTAAAGATCTTGGTCCTTACAATATTGG
TCCACTGTGGATATGGACCTATTTGAAGTACAAAGATAACGCCGACAAAA
CACAGACCGTCCTTCAAGCACCAATGATGAGAACACCTACAGACTATATC
TTGAAGATAGCAGCTGgctttcatttttgtaaattactGTCACCTTTCAG
AGCCTTGGAATGGATCCATGTTGATTCACAATACGACCATAATGGAATTC
GACCAAAAAGtttaagaaatttgaaaattcaggtTGTTCATGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054881-exon-scaffold_245-1491911889:746450..748381 | TCONS_00054881-exon-scaffold_245-1491911889:746450..748381 | Clytia hemisphaerica | exon |
| TCONS_00054881-exon-scaffold_245-1510915933:746450..748381 | TCONS_00054881-exon-scaffold_245-1510915933:746450..748381 | Clytia hemisphaerica | exon |
| TCONS_00054881-exon-scaffold_245-1575043694:746450..748381 | TCONS_00054881-exon-scaffold_245-1575043694:746450..748381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:746450..748381 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
