TCONS_00054868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054868
Unique NameTCONS_00054868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054868 ID=TCONS_00054868|Name=TCONS_00054868|organism=Clytia hemisphaerica|type=transcript|length=554bp
CTTCCAGTAGCTTTTTACATCTGTTATTGTGAACCTTCCTTAGAAAACAC
AAGATGTCAAAACAAAAgatgtgaaaaagaaaatacgCAAGACTCTGCTG
ACTGGTACACCAGAAACATATCGGGTGCGTAAAGGGAACTTTCTCAAGGT
CTAATTAATTCTTAAGAGCCAATCCTCTCtcatttgaaagaagaaagata
aacttaaattttgttatATGTGATATTTATTAAATATGGTTCATTAAATC
AAGAACTTAGCGGCAGATCATCTCGAATGGaagttggaatgtttacaagg
ttcttgacaaaaaatcctttgtttggttgtcaaatgatgacattgccttt
attaattttgttagacttgataaattgatgtttgtgagtgcactttatag
ttttgattcccattgaagaatcctATTCTGGTTTTCTTGTTACTAGATGC
TTTTTTAGAGCTTTAAGAGCTAGCCTACCTGGAAATTCTGGAAATCTGGG
GTAGAACCCCCTGGaagttgaaattttgtgaaaaaagagCTGGAAAACAA
CTAT
Run BLAST on NCBI

transcript from alignment at scaffold_245:454774..455327

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054868 ID=TCONS_00054868|Name=TCONS_00054868|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at scaffold_245:454774..455327 (Clytia hemisphaerica)
ATAGTTGTTTTCCAGctcttttttcacaaaatttcaacttCCAGGGGGTT
CTACCCCAGATTTCCAGAATTTCCAGGTAGGCTAGCTCTTAAAGCTCTAA
AAAAGCATCTAGTAACAAGAAAACCAGAATaggattcttcaatgggaatc
aaaactataaagtgcactcacaaacatcaatttatcaagtctaacaaaat
taataaaggcaatgtcatcatttgacaaccaaacaaaggattttttgtca
agaaccttgtaaacattccaacttCCATTCGAGATGATCTGCCGCTAAGT
TCTTGATTTAATGAACCATATTTAATAAATATCACATataacaaaattta
agtttatctttcttctttcaaatgaGAGAGGATTGGCTCTTAAGAATTAA
TTAGACCTTGAGAAAGTTCCCTTTACGCACCCGATATGTTTCTGGTGTAC
CAGTCAGCAGAGTCTTGcgtattttctttttcacatcTTTTGTTTTGACA
TCTTGTGTTTTCTAAGGAAGGTTCACAATAACAGATGTAAAAAGCTACTG
GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034567XLOC_034567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054868-exon-scaffold_245-1491911889:454774..455327TCONS_00054868-exon-scaffold_245-1491911889:454774..455327Clytia hemisphaericaexon
TCONS_00054868-exon-scaffold_245-1510915933:454774..455327TCONS_00054868-exon-scaffold_245-1510915933:454774..455327Clytia hemisphaericaexon
TCONS_00054868-exon-scaffold_245-1575043694:454774..455327TCONS_00054868-exon-scaffold_245-1575043694:454774..455327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:454774..455327 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.41541	0.40213	0.933713	0.457657	0.139324	0.767093	0.264763	0.867338	0.173683	0.322013	0.104185	0.205682	0.615525	0.213076	0.23385	0.313321	0.154394	0.395623	0	0.22878	0.399594	0.145814	0.235815	0.21439	0.220817	1.18244	0	0.300971	0.114138	0.116558
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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