TCONS_00054853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054853
Unique NameTCONS_00054853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054853 ID=TCONS_00054853|Name=TCONS_00054853|organism=Clytia hemisphaerica|type=transcript|length=284bp
CGATTGCGGAAGAGCAgattaaagatgaaaaattaagacaGCGCGACAGT
AAGATTCTAGCGATTTAATTGGTCAAAAGACGTTGAGGTGCGATATAAAC
AGTATCCTGTCTTCTCGCATTCGattgagaaaaattgaagaCATTACAGT
GACGAAttctctttcgaatgttttgatctagATTCTAATCGTTATCAAAT
CGTTCAAATCGAATCCGTTACTGTAATGGGTGCCAGCAGCCTAATAAACT
CCTAAGTTAGGTACCGTATTTCCTCAACTAAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_245:110298..110581

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054853 ID=TCONS_00054853|Name=TCONS_00054853|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at scaffold_245:110298..110581 (Clytia hemisphaerica)
CGCTTAGTTGAGGAAATACGGTACCTAACTTAGGAGTTTATTAGGCTGCT
GGCACCCATTACAGTAACGGATTCGATTTGAACGATTTGATAACGATTAG
AATctagatcaaaacattcgaaagagaaTTCGTCACTGTAATGtcttcaa
tttttctcaatCGAATGCGAGAAGACAGGATACTGTTTATATCGCACCTC
AACGTCTTTTGACCAATTAAATCGCTAGAATCTTACTGTCGCGCtgtctt
aatttttcatctttaatcTGCTCTTCCGCAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034552XLOC_034552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054853-exon-scaffold_245-1491911889:110298..110581TCONS_00054853-exon-scaffold_245-1491911889:110298..110581Clytia hemisphaericaexon
TCONS_00054853-exon-scaffold_245-1510915933:110298..110581TCONS_00054853-exon-scaffold_245-1510915933:110298..110581Clytia hemisphaericaexon
TCONS_00054853-exon-scaffold_245-1575043694:110298..110581TCONS_00054853-exon-scaffold_245-1575043694:110298..110581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:110298..110581 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87833	1.83167	1.59506	5.20172	5.69933	5.0041	0.603723	2.73185	1.58283	3.40511	2.37875	0.938219	3.73838	1.62166	0	0.858452	0.352514	0.722631	0.499177	1.55025	0.908039	0.664364	0	0	1.00834	3.11281	0.643891	0	0	0.531021
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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