TCONS_00054844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054844
Unique NameTCONS_00054844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054844 ID=TCONS_00054844|Name=TCONS_00054844|organism=Clytia hemisphaerica|type=transcript|length=1383bp
ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCAttatttgaa
cattttcaaaagtttaccTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA
TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT
TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA
ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT
TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGAAAATCTCAGCCAC
ACTCCAAGTGAAGTTTGAAGCCATCAACAAAACAGATCCAGCTCCATTAC
ACCTTACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGA
AACACAAATACAACACCATGTTACAACTTCGAATACACCACGGGAGATTT
TGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTGAAA
ATCTATACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGAATA
TCTTGTTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAAAGA
CACGTCAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTATCT
ATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTGTGA
TAGCTAGAATCATTAAGATAGCAAAAGAGGGaaggaaaatttctaatttc
aaatttttataaatgACAGCTTTAATCCAAAAATGGCTATTGGTCAATGA
AATTCAGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAGAGA
AAGTGATGCCTTGAAATTTACACCGTGACTcggacgacggattgaatcta
gttGAATcaagtttcttttgttttcgcaTCCTACCTTTTTCGTAACCATG
cagtaaattttactttcaatccggcgtttgtaaAAATCATATTGACCGCG
CAACTTCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATTTAC
CTTTATCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTTAAT
AGAATATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTGAGT
TaattattgacaaaaactgTGTAAATAACTAGAGATGCTCGTGATTTCTT
TGTAGTAGTTTTGTATCGTAGCTAATTTGTTATactttaaaatcttattt
tgtaaaGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCGCCT
ATAAAGACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCCCGG
GGAACAAAAATAAACTAAGACTTTCATCTCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_245:766111..769346-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054844 ID=TCONS_00054844|Name=TCONS_00054844|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_245:766111..769346- (Clytia hemisphaerica)
ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCATTATTTGAA
CATTTTCAAAAGTTTACCTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA
TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT
TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA
ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT
TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGGTAAGAAATCATTT
TCATTCTTTAAAAGGCTTAAACACTCTCTCCCACCACGTTGCAAATTCTT
CCAAAAATCGCCCATTTTACATCCCACTGGACAATACACTTTAATACCGT
TAACTCCCGTGATAAACAAAGAGGAATGAATCCGTAGGGGTGGTACAGTC
ACTTTCATTCGGGGTTGTGGACGGCGAAATATGAAATTTGTCGTTCTTTT
TTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTTGTTAGATAGAC
CCCATCCCATATACGTCTCACTTGAAATGTTCTAATTTAGCCAAACTCCA
GTAATAGAATTTTCAAAACGTTTTCTATTGGAATCCATGGTTTAAACGTG
AAATACCCTATCAAAGCAAAATGACATTATTAGATCAATACGACTTTTTT
CAAATGTTCACTCGTAATTTGGTATTGTTCACCGCTATTTTATTACGTTA
CGTACAGGTACGATACTACTACAACAATCTGAAAAAGGACCCCATGTAGA
TTTCCCCTGATTTTCCAATCAGTCAGAGCACTAATTGTACAGTAACTTAA
GATTTAACCGACCAGGTCTGTTGGAAAGATTAGTACACGTTTTTTAATAA
GAACATAAAGGCCTCGATGGCCAAAATTAATAACAAGTTAAGAACATTTT
AAGGCTTTGCGAACTTTAAAACACCCGATTCCTTAGGAAAATGGACAAAA
ATACTCACAACATGGTGAAAATATGAACATGTTAAGAACATTTTTAGGCT
TTTGGGTGTCTAGCGCGAAAAATAGTCCCGCAAAATGCAATTTTCACTGA
AAATCCTCAAAAACCTCTAGAAAATATGAATTAGAAATATAAAAGATTTT
CAGCAAAAAGTGGGTGTCAACCACAAAAATTAGTTCCCTCAAGGTATTGG
TTTGGTAAAACAAAAAATAAATATCTATCTTTCTTAACTGTCTTGTTCTG
CTACGNTTCGGTCAAACAAAAAATAAATATCTATCTTACTTAACTGTCTT
GTTCTGCTACCTTCTGCTGTTACTAAATCTTTGAAGACCTGCACTTGGCA
ATAAGCTAGAAATGATGAATGGGAAAGCTCAACTTTATTTGTATTTACAC
TTAGAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAACAAAA
CAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGCTATC
AATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACTTCGA
ATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGCGTGA
AAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGGGATA
GAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATAATTT
GACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCGAAAG
TAAGTTGTATTACTTTCTTAAAACTTGTCCGAGTCTACATAGTGAAAGTG
CTTCGCCTAACTTTTAAGAACATGGTTCAAATTAACAAAATAGATTGGTC
ATCTTCCTTCTTCGGTTATCTATTTTTAAAACAAAGTTTATTTTTGTAAC
AAGGAATGCCATTCAATTTGCCTCAATGACTGAGATACTGATAATGAATG
AGAATTACAAACCAAAAGTCTGCCAGACAGTAGAAACTTTGGAGGAAGAA
TATTAACCATGATTTATTGATTCTATTCTGGATATTATTTTGGCATTTAT
GATGCCTATTGATAAAAAGTATTTTGAATATTAATTTTCGCAATGCTTCC
AATAAATTCCTAAAGCTAAAAGTTTTCACCGATTTCTAGAAAATCCCAGC
AACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGATCCAGCTCCAT
TAAATGTCACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTT
GGAAACACAAATACAACACCATGTTACAACTTCGAATACACCACGGGAGA
TTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTG
AAAATCTATACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGA
ATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAA
AGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTA
TCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTG
TGATAGCTAGAATCATTAAGATAGCAAAAGAGGGAAGGAAAATTTCTAAT
TTCAAATTTTTATAAATGACAGCTTTAATCCAAAAATGGCTATTGGTCAA
TGAAATTCAGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAG
AGAAAGTGATGCCTTGAAATTTACACCGTGACTCGGACGACGGATTGAAT
CTAGTTGAATCAAGTTTCTTTTGTTTTCGCATCCTACCTTTTTCGTAACC
ATGCAGTAAATTTTACTTTCAATCCGGCGTTTGTAAAAATCATATTGACC
GCGCAACTTCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATT
TACCTTTATCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTT
AATAGAATATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTG
AGTTAATTATTGACAAAAACTGTGTAAATAACTAGAGATGCTCGTGATTT
CTTTGTAGTAGTTTTGTATCGTAGCTAATTTGTTATACTTTAAAATCTTA
TTTTGTAAAGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCG
CCTATAAAGACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCC
CGGGGAACAAAAATAAACTAAGACTTTCATCTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034545XLOC_034545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054844-exon-scaffold_245-1575043694:769061..769346TCONS_00054844-exon-scaffold_245-1575043694:769061..769346Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1575043694:767872..767942TCONS_00054844-exon-scaffold_245-1575043694:767872..767942Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1575043694:766111..767136TCONS_00054844-exon-scaffold_245-1575043694:766111..767136Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1510915933:769061..769346TCONS_00054844-exon-scaffold_245-1510915933:769061..769346Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1510915933:767872..767942TCONS_00054844-exon-scaffold_245-1510915933:767872..767942Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1510915933:766111..767136TCONS_00054844-exon-scaffold_245-1510915933:766111..767136Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1491911889:769061..769346TCONS_00054844-exon-scaffold_245-1491911889:769061..769346Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1491911889:767872..767942TCONS_00054844-exon-scaffold_245-1491911889:767872..767942Clytia hemisphaericaexon
TCONS_00054844-exon-scaffold_245-1491911889:766111..767136TCONS_00054844-exon-scaffold_245-1491911889:766111..767136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:766111..769346 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0294688	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0920747	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top