TCONS_00054810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054810
Unique NameTCONS_00054810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054810 ID=TCONS_00054810|Name=TCONS_00054810|organism=Clytia hemisphaerica|type=transcript|length=1221bp
ATCTAGCTCATGGTCAAATCAAGATGGCGAGCTTAGAAGTCGAGTCAGCA
GATGTTATTAGGTTGGTTCAGCAATATTTGAAAGAGAACAATTTGCGAAG
AACACTTCAAACGTTACAGGAGGAGACAACAATTACTCTGAATACGGTTG
ATAGTGTTGAAAGTTTTGTAGCTGATATCAATAATGGGCATTGGGACATT
GTCCTCCAAGCTATTCAATCTTTGAAGCTGCCTGATAAGACATTGATTGA
TCTATATGAGCAGATTGTTGTGGAACTAATAGAACTCAGAGAACTTGGCG
CAGCCCGGTCACTATTACGTCAAACAGATCCTATGCTAATGCTGAAGAAG
CATTCAGCAGATCGTTATTTGAGGCTTGAAAATCTACTGGCCCGTTCATA
TTTTGATCCAAGAGAGgCTTACCCTGAAGGTAGTAGCAAAGAAAAAAGGA
GAAATGCCATCGCTCAAGCATTGGCTGGTGAAGTGAATGTGGTGCCACCA
TCTCGATTAATGGCATTGCTTGGACAAGCCTTAAAGTGGCAGCAGTACCA
AGGTCTATTACCGCCTGGTACATCAATCGACTTATTCCGTGGAAAAGCTG
CCATGAAAGGTGCTGAGGAAGAAAAATGCCCAACATATCTTAGCAAAACT
GTCAAGTTCGGTACAAAGTCACACCCAACAGCGTGTGTGTTCTCACCTGA
TGGTCAATATTTGGTCACTGGTAGTGCTGATGGCTTCATCGAAGTATGGA
ATTACCAAActggaaaaataagaaaagatctGAAATATCAAGCTGAGGAC
AATTTCATGATGATGGATGATGCTATTTTGACTTTATCATTCAGTCGAGA
TAGTGAAATGTTAGTCTCAGGTAGTCAGGATGGTAAAATTAAGgtttgGA
AGATTCAAACTGGACAATGTCTTCGCCGACTTGAGAATGCCCATTCAAAA
GGAGTCACATATGCAGTCTTCTCCAAAGATTCAAGTCAAATATTAAGCAC
CTCTTACGACTATCTCATAAAgATACATGGTTTAAAGTCAGGGAAAACGT
TAAAAGAGTTCCGTGGGCACACGTCTTTTGTAAACCATGCAACTTTCAGT
TCAGATAATCATCAGATAATCAGTTGTTCTAGTGACGGCACCATCAAGCG
CAACCAAGATGAAGGAAGACCAAGAGAGATTTCATGAGCTATGGTATGAT
TGCAATAGTGTTGTTGTCTCG
Run BLAST on NCBI

transcript from alignment at scaffold_245:345415..356807-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054810 ID=TCONS_00054810|Name=TCONS_00054810|organism=Clytia hemisphaerica|type=transcript|length=11393bp|location=Sequence derived from alignment at scaffold_245:345415..356807- (Clytia hemisphaerica)
ATCTAGCTCATGGTCAAATCAAGATGGCGAGCTTAGAAGTCGAGTCAGCA
GAGTAAGTTTTACATCTCTTTTTATATTTTTATTTAAATTCTGGATCTAG
ATTGGGTTGTTCCATACCTCTGTGAGAGATCACACACAGTGCCCAGTACT
CATTTTCACATATTGTGCGTGCGTTCAGACTCACCCAGCCAGGTGCTCGG
GGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGTTTCTT
GTTACCTACCGTTACCACTTTAAGTAACAACGAATTACACCAATCAGAAG
CTCGTGAGTTCTCTGAGAAAGTAGTTTTAGAGCGATTTGTTTTATATATA
TAAAATCTCCTGAGTGAATTTAGTTGGACAGAAATTCTTATTTCTTCACA
TAAATTTACTACTACACGTAAATCCAGGCGGTGTCAATCAAACTGTTCGA
TTATCGAACTAATCGAACTTAATCGAACCCTATCGAACGATAGCTGTTCG
ATTACCGAACCCAATTGAACACCTATCGAACCGGGAAAACTTTCGTAAAG
TTCGATGACTGTTCCATTATACGATTATAGTTTGATCGCGCAGTTCGCGA
TGAATACGATTGAGGTTCAATCAGTTTGATTAAGATCAATGAAGTTCGAT
TTGTTCGATTAAATCGATTTATACCTTGCCACCCAATTTTTTATTTATAT
TCCGAGGGCGTATTGGCGGCCGCCCACGGGCCATTCTCGCGGGCCATCCC
TTTATATCTATCCCATCAGATGGGACAAGCTGGAGCTTTTACAAGCTCCT
TTGGTCGTTTAATTTGTAAAAAAAAGATTTTAATCTTTATTACTTTTTTT
AAAGAAAGAAGCATTCGGTGCCTGTGTTTTGATTAGTGCCGTAGTATAGT
GGTAGTCGACCTTGGCTTCTGTGCAGGCGGCCAGGGTTCGATTCCCACTT
ACGGCAGTTTCCTTGGCAAGTGAACGTTCCTTCGCCCGGGTCAACCCATG
CCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTGACGGGACGCTCA
TTAGTAAGCGTCTATAGTTGCGAGAATAGGCCTCTAAAGCCTCCTGCAAC
TCAACCAAATAGAAATAGAATAGATTAAACAACCTCGTAATTTTCTGAAA
GGTAAAGAAAAGTAGAATCAATCCGACACAACCATCGAACCACATCGAAC
TTAAATCGAACTCATCGAACATCAATCGAACTTCAACGATCAAAGAAAAC
TCATCGAACTAAATCGAACTTATCAAGAAATTTTCGTAAAGTTCGATAGC
TGTTCGATTGGGTTCGGTAATCGAACAGCTATCGTTCGATTTTTTTCGAT
AAAGTTCGATGGTTCGATAACGAAAATCAGTTCGATAGGGTTCGGTTGAC
ACCGCCTGGGTAAATGTACTATTTACTTTAAATTGGCTCTGATTTCATTG
AGCACTCTGCAGCATCAATCACAAACAAATCTATTTCTTCAGACAAACCC
AAAAAATTCGTCACCGAAAAAAACATGGCTGGCCGCAAAATAATTTTTTT
TGCTAAATTTCGATCCCAAAACTCAATTTTTTAAACCAGACGATCTCAAG
ACGATTTGCGTTATACACGGCGCAAACTGCAAAAGAGCGATAAAAGCACA
TGGTTAAATTTTGATGTTTGAAATGGTTTTATATGGATGAAATTGCATGA
GAATTATGTTTTTGATAATTCTTTGTGTTTTCCAAACATTTTCCTCTGCA
ATGACATTGATTAGAGTTAAACCTGTCATCACTGACCTGTGACCTGTGAC
CTGGGTTTTACACTAACCGCGCTGTTTTATTTATATACCTGCGATTCTGT
CGGTGAGTACACATGGCATGGACCAGGGGTTTAGGTACCCCCTAAGAAAA
TAGGTACCCCCTGAATTTTAGGTACCCCCAAACAACAGACGTTAGTAGTA
GGTACCCCCTGTGATTGGTACCCCCTGTGACTTGAGTATATGTCAAGAAA
TGAAAAAAATTGTATATTTTTACAATTAAAAAGAATAATGATAGTTAGAT
AAAAGCAAGATAAAATATCGTTCCCAAGCCCCCAGACCTTACTGCATAAA
AGTTAGATACCCCCAGAGATCATAGGTACCCCCCTGAAATTGAAAAAAAG
TCCAGCCCCCCAGCCTTTTTAAGGAAGATTTTGGTTTTAGCCCCCCTGCT
GTGGGGGGGGGGTTCATGCCATGGTACAGTAACGTTCGCCAAAATTACTC
GTCTGGCAAATATGAGATTTTAAAATGGTAGAGTAGAGCTGCGAGCAGAG
CTGTAGTTCATTTGTTTTGAAATTTTGCTGCTTTCATTGGTCAGTCATTT
GATGGCTATGCAAGTTTCTCTCTACTGATGCAAGTTACCTGGCTTCACGG
TACTTGGCAGAAACTTTCGCGCAAAAATTGCAAAAGTTTCTGCCCTTAAA
GTATCCTTGATTGCCTTGCTGCCCCCTGTAGACTGAGGATACTAATGACA
GAGACTTGGGGGGTTCCACTGAGGGTAGATGTACGTAGAGGTTTGAAAAA
GGGGTACCTTATATGGAACTTGATTTTTCTCATCCTCATCCGACACTTTG
CGTGTCTGGTGTTTATAAAGTCCAGAGTGTTGGCAGGGTCGTTTCCCACC
TGAATTTCCCCCAAAATTTCCCCTACAAGAGACTGTTTTGCTCAAGTGCC
GTCAACGGCTCTAACTTGGGACTATCTGACAAAACATGGGACAGCAATTC
GGCCACCAAAGTCATTTAATTAACATAACCGCGAATCATAGAAAGCAAAT
GATGTGAATACGCTACTCTCACCAGGTAGGCTTTGCGACAAGAAACGCAT
GAATGCAATCGCGCGCATTCGCGCAAGCGTCCAAACACAGATATCATAAA
AATCAGTTCTTCCACTGAAAATTGTGAGATCCATTATCGCCACTTGGTAA
CTTTGACATGCCCATCAATCGTGCATGCTGGAAAAAAGTCTCTAGAGAAT
AACAAAAAAAAAAATGTTTTCACGTTCACATAATTTTGATTTTAATTCTT
TGGCCAAGCTATTTGTGGCATTATTTTGGGTTAACCTCTTTTATGGCCTT
ATACCAATCATTTTTACCAGCGTGAAGTTCAGCCAGAGGGTTTGTGAGGT
GACTACTAGGTTTGTGAGGTGACGGATATGTCCAGGCCAAAAATCAAGAT
TAAACTAAGAAAACTTTTTGTGACATTATTGAGACCCTTTGTGAGATTTT
TGTCCACATGCCAAGCCTAAATGTACATGTACAAACATTAGGTTATAAGG
TCCGAAAATGTCAAATTTTCTATGTCCTTTGAGCTTGACACTAGGAACCA
TTCAATAAGTAGTACGCTGAAAATTGGTGAAAATTGACCACCCCCTCCCC
CTTGTACGCTCTCGTACGCTTTGGCATTACCCCCCCCCCCCCCCTTCGTG
TATGTACGCTTTTGAAATGCCCCCCCCCCCCCCCTTCGTGTATGTACGCT
TTTGAAATGCCCCCCCCCCCCCCCTTCGTGTATGTACGCTTTTGAAATGC
CCCCCCCCCCCTCGAAAAAAAAATTGAGGTCATATTAAAAAGTCTATACA
AAGGCAAATTAGGGGATTTTGAGAAAAATTAAAACAAGTTCAACTTCTGT
TTGTTTTTTGTAGATGATATTATCAGAATATCATTCTAACCAAACTTTGA
CTGAAATTTCGTTGTATTGAAAAATGTCAAAGCGTACGTCCCTTTCTATT
TGACCTCCCCCCTTCCCCTCATACGCTTTTGTACGCTATTGGTGTTACCC
TGTCCCTCCCCCTCAGAGCGTACGTACTTTTTGAATGGTCCCCTATCAGG
TTATCGTGTTTTTGCAGCTAATTATTGGAGTAAAAAATGACATCGTGATT
AGCAAAAGGTTGATTGTTTTCTTAGAAACATTGTTATATTACTGTTATAA
CTGGGCTAGACTTTTCATAAATTCATAATATTTTTAGACAACTCTTATTA
TCATAGTTATATATCAAATGTCAGACCTTTTGGCTAATTATTTACTCTCA
AATATTTCAAGATTTAAAAAACCCTTTTTTTCTTATATTCAGTGTTATTA
GGTTGGTTCAGCAATATTTGAAAGAGAACAATTTGCGAAGAACACTTCAA
ACGTTACAGGTAAAAATAATACTTGATTTAGGGAAATAAATTAATATTTT
CCAATGGCTCTGAATGCAAAAAAAAATTAAAGTTGTTCTAAAAGCTAAGG
ATAAACTTTTCTTTAAAACCAGCATTTTGTTGCAAAGGCATTGAAAAAAT
TACAAACAATTTTGAATTAAGATTCATAAAATTATGAAATTTTTTGATTT
TAGTACCAATTTACTAAAAAGAAATCTCAAATTTTAGTCTGTATACCACC
TTTTTGGTATTTTAGTACGCCATGGTACTAAAAGTTTCATGGATATGTGA
AAATGTATGTTTAAATTGTATGATTTTCTATACAAAATGCAACTAATTTT
GTATTAAAGGGTGTGCATTTAACTACTTATCTCTTGAGTTGAGTGGTGCA
TACAGGTCTCATTCTAGAAAGGCAGGGTAGCATCTGTTATGACTAAAAAA
TGGCACTTTTTCTGCTGATTTTTCATAAAAAGGGCTTTTTTTTATAATTA
GGCAAATACTTTTTTATTTATTGGTTTACGGATCCGCCGACGTTATTTTT
GGCAAAATAAAAAAAAAATAAAATAGAGATTTCAAAAAGTTTTATTTACT
TTTTCTCCTCCGACCTTCAAAAAAGAAGAAATAAATAAAAAAACTTTACT
TAAACAGGAAAACAAAAGAAAATAAGAGAAAGAGAGGGGTTAAATGATCT
AACACAGATCATTTACCAATATCTGCCAATGTAAAGATACTTTGATCCTT
CCCTTAATGTCAGGGAACTTCCCCATGGAATTTCCCTATCCACAAAAAAC
AAACTAAATTATAATAACTCTTTCTACCCTAAAGTGGGAACCCTAACTAT
GAACCCTAGATGGGAACCTATGTCAGTCTTACATATACACATATCAATCT
TTATGTGTATATACATTTTTATGTTTCAGTTTATTTTTAGTGTTTTTTAT
CCATAGACTCTATCTATAAACAACATCTTGCATTTTATTCTTTTGCCTTT
AAATCTAAAAAATCCATACCTCAGGAAATTTCACAAAATTTTACTTTATT
ATTTCCTCCGATTTCAGATTCTTAAAAAGAAAATTAAAAAAAAATTAAAA
CGTTAATTTTATTTTTATTGGACCTACCTAAGGTAGTCCTTTAAATTAAC
CCTTGTCCGTTCGTTCGTTCGTTCGTTCGTCTGTTCGTTCGTTCGTTCGT
CTGTTGTCAGCTTTTCTCGGGATTTTTTCAAATTTTTTGCACAATGATGC
AAAATGGCAATGCCCAAAATGTGACAGAGCCCGATTTTTGAAGAAAAAAA
ATTTTCCGGCCGAAAATGGCGGAAATATGCCGGAAAAACTGGTTTTTCGG
CATTTTCTCGAGATTTCATCATTAGTTTTTTCTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCTAGTCCGATTTTTGAGAAAAATTTT
TTTCCGGCCGAAAATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGA
CTTTTCCATATAATTGGTTGTTTTTTCATCCAAAAAGATTATCAATAGCA
ATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGATTTTTGAAG
CCGGAACTTTCTAAAAATCGCCGGAACAGCCGATTTTCGCCGGAAAAACG
GTATTTCTTGAATTTCTTGAGCTGTATTTTATATTTTTTCATGAAATTTT
GCATACTGATGCAAAATGTCAATACCTAAATTGTGACGGAGCCCGATTTT
CGAAAAATTCATTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAACCG
TTTTTTTGACTTTTTCTCGAATTTTCATTTTTAGTTTTTTCTGATTTTTT
GCAGAAAGATGCGTACTAGCAATGCTCAAAAAATGGCCGAGTTCGATTTT
TGAGAAAAAATTTTTTCCAGTTGCTGGAAATCGCCGTTTTTGCAGATTTT
CATTGGATTTTTTCCTTGTATTTCTATGTTTTTCACACAAAAACATTATT
GATAACAATGCTCACCATCAAGCATGATTCAATTGTCAATAAAACTGATT
TTTGCGACCAGAACTTCCTATTTATTTTTTTCCCTACAACCCTTCTCTCT
CCTCCCATCAACAATCAATGATGAATTTATTGTGTTGTGTATTTTCGCTA
AATGCTTTATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTA
TCTAACTTTCATCATGAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTTT
TCCATCCTCCTGTCCAAAACTTTTCCTCAAAATGTCCGTAAACCAGAAAA
TAAAAAAGTAATTGCCTTATTTTTCTTAATTCTTGAAGGGCAGCATCCGA
TATCAGGACGCTAAAAAGGCTAGTGTGGTCGTGTTACAAAAATACAGGCT
GTTTGTAGGAAAAAAATAAGATCTAGCTGAAACTTTCTCCAGACCTTCTC
TATATATCCTATACCTCAGGAAAAAAATCCCCTAAAATCCTGCTGGTGGA
ACATCCCTTATTTGGGGTATTTCTATTTTCCCCAGGCAAAATCCTAAGGG
CGAAATTTTTTGAAAATTTCAAACTTATTTTCAGACATTATCAAGTATAC
CATTCGGAAGCTCTCGAAAAACTATATAGAAGACTTTTAAACGGTTATAG
GTTTAGCCGATTTCCTTACCTAACTCGAGATATTTCATGCGCAAGTTCCA
CTTTTCGCCACATTTTGGTCTAAAATTAACCATAAATAACATCTTCTGCG
TGAATTATCTTGAGCTAGGTAATGAAATCGGCTATACCCGTTTAAAAGTC
TTCTATATAGTTTTTCGAGAGCTTTCGAATGGTATACTTGATAATTTCTG
AAAATGAGTCTTAAATTTTCAAAAAATTTCGCCCTTAGGGTTTTGCCTGG
GGAAAAAAGAAATGTCCCAAAAAAGGGATGTTCCACCAGTGGGATTTTAG
AGGATTTATTCCTGAGGCATAACCATCCTATAGAGAAGGTCTGGAGAAAG
TTTCAGCTAGATCTTATTTTTTTCCTGTAAATTTTGCTAAACAACCCCAC
TAGGCATGAAAAATGGTCCGGCATATATACTTTCCATGTACTGGCATTAT
AATCCTTTTTTCTGCAACTTGAGAAACAATCAATCAGCATTCAGTCTGCT
TTAGTCTGCTTTAGTCTGCTTCAGTCAAGTTGTTTTGAGAATATTTGTTC
TTTTACTCACAGGAGGAGACAACAATTACTCTGAATACGGTTGATAGTGT
TGAAAGTTTTGTAGCTGATATCAATAATGGGCATTGGGACATTGTCCTCC
AAGCTATTCAATCTTTGAAGCTGCCTGATAAGACATTGATTGATCTATAT
GAGCAGGTGAGACTTTTTTTTCAATCCTTTTACTGTTCAATTCATTCAGA
GGTAGAATGTATTAGAATTATTTCAACAAATCGCTATATCAACTTAAGAG
CCATTTTCTGTAAGAACCAGGCAGGTGGTGATAGTAGAAAAATTTAAATT
CCTCCATTTTTGGATATTTGGTAGACAATAGTGAAAAACTCAAAAAGTAG
CAAATCCGGCTCAAAGTTGTGACTAATTTCGGGCAAAACCAAAAATTGGA
TCTGATAGCCTAGACTATGTATTTTCAGAAAGTGAAAAAAAACCCATGGG
ATCTATAAGCATGAAAGAGAAAAAAACGATCAAAAATTTTCTTAAGTCCG
ATAAAAAAGTACGTGTTTTAGGCCTGTTTTCAAGCTGGAAAACCGGTTTT
ACAGCTTGGAAATAAATTTTTTACAAATATTTTATCAATATTTCCAAAAA
AACCTAGTATTTATTCCAAACAATTCATTTGAGTTGAATATATCCAAGAT
TCCATGATTTTCGTCATTTTTCAGTGAATTTCGTACAGAGGCTTCAAAAA
AATCATTCAAAAAGTGATATTTTTCATTTTTGACGCAAAAACCCCTTTTA
TCAACCTAGGCAAGGCTCAGTTCATGATCATTAACTGAAAAAGTTACAAT
GAGATTCATGGTTATCGTCTAAACAAGGGAAAAACAAAGTTTTGAGAAAA
ACAGCTTTAAAGTTTCTAAAACCAGTACAACTCCATTGATGCTAAGGAAA
TCTTTTGCAATTTGCAAGATCACATGGCCTGCAAATGATAGAGTATCCTG
ATAGTCTTGGTCACTCCTGAACGCAGCCGTAAAATAAGATTTCTTCTTTA
CCTCACCATCATCATCTCAGTAAATAAATACATCAATATGAAGTGTCATT
CTTTTTTGCCAAAATAATCACACTGTCCCTCTCTAAATCTCATTGGGAGG
ACTTTTTGGCAAAAGTCTCTAGTCCACAGTCCTGTTGATTTGATGAGGAG
CTCAAAGGGCATCAATTTGAGCTTTGTCCTGTTGCACATGTCTCATTACG
TGTTGCAGACATTTGAATATAGCATTTCTGGCCATCTTCTGAGTTTTTCA
CTATTGTCTACCAAATATCCAAAAATGAAGGAATTTAAATTTTTCTACTA
TCAAAATTGTCCAAAACTGCCTGGTTCTTACAGAAAATGGCTCAAATATT
GCTATGTAAAACTTTAAATTCATGTTGTTTAATGATTCTGAAATGTTTTT
TTTAGTTGCAAAAAACACCACTTTCCTGTAGGAATTAGTTTGGAAGGAAT
TTTTTGGAAGCTTGCATACTGAAATAGGGGGGTATGAACTTAAACGGATA
TTTCAACCTCTTACAAACTCTTAACTAAATTTAACTTTTCTCTTCTAGAT
TGTTGTGGAACTAATAGAACTCAGAGAACTTGGCGCAGCCCGGTCACTAT
TACGTCAAACAGATCCTATGCTAATGCTGAAGAAGCATTCAGCAGATCGT
TATTTGAGGCTTGAAAATCTACTGGCCCGTTCATATTTTGATCCAAGAGA
GGTATTTCTATAACTTTCTATAATCTATTTCCCATAGAAGAATTCTTTAA
TTGTAATGATGTAGTTTTTTTTTAACGATAACTATATTTTTTTTTCTCTT
TTTTCAGGCTTACCCTGAAGGTAGTAGCAAAGAAAAAAGGAGAAATGCCA
TCGCTCAAGGTAGGTTGCCACCACTCTCAAATACTTTGAATACTTCTTTT
TTGAAAGTGGATCCAGATGGTGTTTTTGTTTTGGATGTCAGCCTGTCTTT
TGATGACATATTAATAAGGGAACCTTTCATTTCTAGCATTGGCTGGTGAA
GTGAATGTGGTGCCACCATCTCGATTAATGGCATTGCTTGGACAAGCCTT
AAAGTGGCAGCAGTACCAAGGTCTATTACCGCCTGGTACATCAATCGACT
TATTCCGTGGAAAAGCTGCCATGAAAGGTGCTGAGGAAGAAAAATGCCCA
ACATATCTTAGCAAAACTGTCAAGGTATATTACAGCTAGTTTTTCACTTT
TTTCTTAAGCCAATTATTTTCTCCATAAGCACCCAAAAGATTCTCAAAGA
ATGAACCAAATTGACTGACACTTTCCAAATTCGAACATCAATTACTTTTC
CCTTCAGTTCGGTACAAAGTCACACCCAACAGCGTGTGTGTTCTCACCTG
ATGGTCAATATTTGGTCACTGGTAGTGCTGATGGCTTCATCGAAGTATGG
AATTACCAAACTGGAAAAATAAGAAAAGATCTGAAATATCAAGCTGAGGT
AATTAGCCATCTGACTTTATCAATTTTTCAATATTCCCATTCAAACTATA
ATAGTTTCGTACTTTTGATAACACTTATCACGTAAGTATCACGTAAATAT
TTCGTTGTTTTTTTGGAAATTATAAAAATTATTTCTGGTATTAATTTTGC
AGGACAATTTCATGATGATGGATGATGCTATTTTGACTTTATCATTCAGT
CGAGATAGTGAAATGTTAGTCTCAGGTAGTCAGGATGGTAAAATTAAGGT
ACATTGCTTCGTTTTCTAAAAAAAACTTACTAAATACTGAAATTAATCTT
TTCATGTTTTTTCAAATGTATTCGATTAAAGATTGTTGGTCGTTCCTTTA
AAGTCTCAAACATGCTATGTATAAATCTCTTGCTAATGAGTAAAGGATTG
ATTTTTTTAGGTTTGGAAGATTCAAACTGGACAATGTCTTCGCCGACTTG
AGAATGCCCATTCAAAAGGAGTCACATATGCAGTCTTCTCCAAAGATTCA
AGTCAAATATTAAGCACCTCTTACGACTATCTCATAAAGTATGATTATCA
TCTTATCATTGAATTGGGATAATAACTTTTTGGAAGATATATGGTCTACT
AATAAGTGAAAACAAAATACCATTACTCTTGGTACAGGGGATTTGAATAG
TTTTTATGCATTCAGGTTTGGTCTAAAAGAGTTCATTAAAGAGTGAAAAA
ATAAGAATGTCTTTGGTGGAGAATTTAGAATATGATGCTAATAAAGAAAA
GAAGAAAAGGAAAAATAAATGCATTTTGAAAAAAGTGTTTTCACAACAAT
TTGAATTATTTGATCATTATTTAATCTCACGATTGGAAAATTTCTAAAAA
TTAATTTAAAACTTATTGTTTCTCGAAATTTTTGTTTTTTATCTTTTCAG
GATACATGGTTTAAAGTCAGGGAAAACGTTAAAAGAGTTCCGTGGGCACA
CGTCTTTTGTAAACCATGCAACTTTCAGTTCAGATAATCATCAGATAATC
AGTTGTTCTAGTGACGGCACCATCAAGGTGAGATATGATTTAGACAATTT
TATGACCGTGACTTCTCTGGTATATGTCTTAGTGAAAAGAATTTAAAAAT
AAAAGGCAAAGCTTGTTGATTTGACCAGGGCAAAATCCACCGTTTTCGTT
TTGAAATGTTTTGACCCCTTTAAATTTAAAAGTATAATCTCAGTCAAGCG
CGTTCATTCGCCTCACAAAGAGTTGGTATAAGGAATTGATAATGTACCAG
AGAAGTTACGGTAATTACTTCTGTAAAAAGAAAATGATACTCACATTTTG
TATCACTTCTTTTATCATAGCGCAACCAAGATGAAGGAAGACCAAGAGAG
ATTTCATGAGCTATGGTATGATTGCAATAGTGTTGTTGTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034528XLOC_034528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054810-exon-scaffold_245-1575043694:356756..356807TCONS_00054810-exon-scaffold_245-1575043694:356756..356807Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:352549..352615TCONS_00054810-exon-scaffold_245-1575043694:352549..352615Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:349102..349245TCONS_00054810-exon-scaffold_245-1575043694:349102..349245Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:347557..347709TCONS_00054810-exon-scaffold_245-1575043694:347557..347709Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:347399..347450TCONS_00054810-exon-scaffold_245-1575043694:347399..347450Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:347084..347271TCONS_00054810-exon-scaffold_245-1575043694:347084..347271Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:346810..346950TCONS_00054810-exon-scaffold_245-1575043694:346810..346950Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:346560..346655TCONS_00054810-exon-scaffold_245-1575043694:346560..346655Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:346270..346397TCONS_00054810-exon-scaffold_245-1575043694:346270..346397Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:345781..345907TCONS_00054810-exon-scaffold_245-1575043694:345781..345907Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1575043694:345415..345487TCONS_00054810-exon-scaffold_245-1575043694:345415..345487Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:356756..356807TCONS_00054810-exon-scaffold_245-1510915933:356756..356807Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:352549..352615TCONS_00054810-exon-scaffold_245-1510915933:352549..352615Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:349102..349245TCONS_00054810-exon-scaffold_245-1510915933:349102..349245Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:347557..347709TCONS_00054810-exon-scaffold_245-1510915933:347557..347709Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:347399..347450TCONS_00054810-exon-scaffold_245-1510915933:347399..347450Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:347084..347271TCONS_00054810-exon-scaffold_245-1510915933:347084..347271Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:346810..346950TCONS_00054810-exon-scaffold_245-1510915933:346810..346950Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:346560..346655TCONS_00054810-exon-scaffold_245-1510915933:346560..346655Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:346270..346397TCONS_00054810-exon-scaffold_245-1510915933:346270..346397Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:345781..345907TCONS_00054810-exon-scaffold_245-1510915933:345781..345907Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1510915933:345415..345487TCONS_00054810-exon-scaffold_245-1510915933:345415..345487Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:356756..356807TCONS_00054810-exon-scaffold_245-1491911889:356756..356807Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:352549..352615TCONS_00054810-exon-scaffold_245-1491911889:352549..352615Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:349102..349245TCONS_00054810-exon-scaffold_245-1491911889:349102..349245Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:347557..347709TCONS_00054810-exon-scaffold_245-1491911889:347557..347709Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:347399..347450TCONS_00054810-exon-scaffold_245-1491911889:347399..347450Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:347084..347271TCONS_00054810-exon-scaffold_245-1491911889:347084..347271Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:346810..346950TCONS_00054810-exon-scaffold_245-1491911889:346810..346950Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:346560..346655TCONS_00054810-exon-scaffold_245-1491911889:346560..346655Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:346270..346397TCONS_00054810-exon-scaffold_245-1491911889:346270..346397Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:345781..345907TCONS_00054810-exon-scaffold_245-1491911889:345781..345907Clytia hemisphaericaexon
TCONS_00054810-exon-scaffold_245-1491911889:345415..345487TCONS_00054810-exon-scaffold_245-1491911889:345415..345487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:345415..356807 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87841	4.62581	4.53561	2.41113	29.0931	17.2068	18.3055	23.2552	17.5158	18.3772	16.94	15.9663	9.8551	8.66705	13.5239	14.2878	20.6913	17.9006	2.52626	5.43554	7.73356	6.68271	0.622716	3.56759	13.625	12.0396	1.07878	3.54403	0	0.410148
Blast
[Close]
BLAST of TCONS_00054810 vs. Swiss-Prot (Human)
Match: SMU1 (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 298/373 (79.89%), Postives = 333/373 (89.28%), Query Frame = 3 
Query:   30 SLEVESADVIRLVQQYLKENNXXXXXXXXXXXXXXXXXXVDSVESFVADINNGHWDIVLQAIQSLKLPDKTLIDLYEQIVVELIELRELGAARSLLRQTDPMLMLKKHSADRYLRLENLLARSYFDPREAYPEGSSKEKRRNAIAQALAGEVNVVPPSRLMALLGQALKWQQYQGLLPPGTSIDLFRGKAAMKGAEEEKCPTYLSKTVKFGTKSHPTACVFSPDGQYLVTGSADGFIEVWNYQTGKIRKDLKYQAEDNFMMMDDAILTLSFSRDSEMLVSGSQDGKIKVWKIQTGQCLRRLENAHSKGVTYAVFSKDSSQILSTSYDYLIKIHGLKSGKTLKEFRGHTSFVNHATFSSDNHQIISCSSDGTIK 1148
            S+E+ES+DVIRL+ QYLKEN+L R L TLQEETT++LNTVDS+ESFVADIN+GHWD VLQAIQSLKLPDKTLIDLYEQ+V+ELIELRELGAARSLLRQTDPM+MLK+   +RY+ LENLLARSYFDPREAYP+GSSKEKRR AIAQALAGEV+VVPPSRLMALLGQALKWQQ+QGLLPPG +IDLFRGKAA+K  EEEK PT LS+ +KFG KSH     FSPDGQYLVTGS DGFIEVWN+ TGKIRKDLKYQA+DNFMMMDDA+L + FSRD+EML +G+QDGKIKVWKIQ+GQCLRR E AHSKGVT   FSKDSSQILS S+D  I+IHGLKSGKTLKEFRGH+SFVN ATF+ D H IIS SSDGT+K
Sbjct:    2 SIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVK 374
The following BLAST results are available for this feature:
BLAST of TCONS_00054810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMU10.000e+079.89WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]
back to top