TCONS_00054804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054804
Unique NameTCONS_00054804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054804 ID=TCONS_00054804|Name=TCONS_00054804|organism=Clytia hemisphaerica|type=transcript|length=2120bp
GACAAAATGCAAAATAAGAAATCTATAGTAATAGAATAACACAGAAGGTT
GAGCAGGAGTGAAGATGACCAAGACAGACATTCCAGAGATGGCATCCATC
ATGGGTAGTGATGGCAGACGACCAAGTTTGAAAACGAAACGAGTATCTTG
GCTTTTGGATCAGCCAATGAATGTCAAGTTTGatgaagaaatcaaaaatg
aagatgaatcGatgacgtcatcaagcaAACATGGTGCAGACCAATTCGAA
ATTCTCTCCTTCATCGAAAATGGAAATGGTAGCAAAAtctatgacgtcat
tcaaaagcAACGGAACCGAAAATACACCATGGAGGTGGTTCCCCGTAAGA
ACTCAACACAAGATGAAAGCAAGAATACCAAGTTACATAAACATTCGCAA
CTGAAGGCGCCTTCTTGTTATCTGACTCAACTTAAATATTCTTTCCAAAC
CAAGACGCGAAAATATTTCATACTCTCACATTTACACCGCCAAAGAAACT
TATcagaactttttcaaaaacaaaaaatcttggatAACAATACAGCAAGG
TTTATAATAATCCAACTGCTTTCAGCTATCGATCATTTACACCAATCAAA
CGTCTGTTATGAGAATATCAATCTTAGCGATGTATATTTTGACAATAAAG
GTCACGTGATTCTGAAACGAACTTATAGTGGGCAGAATTATTGGACGGTT
AACGAATGTTACGGTTGTCAcaaaggaaaatgtaaaaacaaataTCACAT
AGCCGGACAGGTCGCAAGTATGGCAAAAGCAAACGATTTTAACAACGTTG
GCCAACTGTTCGTACATTTAATCACTGGTTCACAACATTCATATAGTCTG
CTGGAAAGTGCAGATCGCACCACTAAAGACTTCGCATATTTATTACTTAG
ACACGATGTTGATATTTCCAAAATTAAGAACCACCCATTTGTCAATGATA
TCAATTGGAATGGGGTCACTAACAAAGAACTCGACATCCCAGAAAGCATC
TCGATGTTTGTCAAGGAAACACGTGAAAGGCAATCGAGTCAAAATAGCAT
GATTATAGAGAGAAAGGATGCTGGCTCCCCTCCGGAGATCTTAGTCGGCG
TAAGAAAGCCGAGATCAAAAAGCGAAGAACCATCTCGAGTTTTGAAAGCC
AGCTCTAAGAAATCAGGAGTACGTTCAAAATCCTACAGTAGCAATGAACA
AAAGCTTAACCAAAATTTTCCCAATGTCCATCGTTCAAAATCGTTTAGTA
AAAGTGAGAGTTATAACTCGGTCTTTCAAGATGATGTCGAGTTGGGTACT
CCTGCTAAATCGCGCAGGACAAGTATCGACATGTATCGTAAAAGAttgga
agaaatctcaaaagTCATTGATACCCATAGCAACGAGACAAAACAAACGA
CACCATCAACCAATGAAATCGAAGTAGCTAAACCACGTGAGTCAGAATTC
TTTTTCGAGAAAATGTATTCCGAAAATGAAGCATTGAGAACAATATTAAC
AAAGTATGGATTGTTAAAGGATAAGGGTCCTGAAGTGAGAAAACCCCAAA
GACCGAACTTTCTAGACGTTAAAAAAGACGACgcgtcgatgacgtcatca
ggagCTGATTCACCTGTCGAGTCGAATAATTTGTTATCCTCAAAACGACG
ACAAAGTCGTAAAATTCGGAAAAACAATTTGTTGAGTCGATCATGTAACA
ACATACAAATTTTGTTCAACGAGAACAGCGATCATACAGATAGTGTTGAT
GAAAATTCAAAACGATCACAACTGGATAGCTCCATGGGAAAGAAGCAGAA
AAGTGAAAGTTGTTTGACGGTCATCGGCACGACGGATGAAGATATCGACA
AAAACAACAAAGGCGGCAACAAGCTTATCGATCGATTAAATGGTCTCAGT
AAAAGTAAAACTTTTTACATGAAAAGAACCTCTTCTATGACATCACCATC
CTCCCCTAGCgtaatgaaaagacatttttcaGATTCTCACATCAAATCAA
CCAACCTTTTATCACCAAATCCAAAATACCAAGATAAGATGATATCAGCA
CCACAAGCTTTGTCTTCATTATTGAAGTCCACTTCATTGATTGGTCAGAA
ACAAACGAGTCATGATAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_245:223355..228578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054804 ID=TCONS_00054804|Name=TCONS_00054804|organism=Clytia hemisphaerica|type=transcript|length=5224bp|location=Sequence derived from alignment at scaffold_245:223355..228578- (Clytia hemisphaerica)
GACAAAATGCAAAATAAGAAATCTATAGTAATAGAATAACACAGAAGGTT
GAGCAGGAGTGAAGATGACCAAGACAGACATTCCAGAGATGGCATCCATC
ATGGGTAGTGATGGCAGACGACCAAGTTTGAAAACGAAACGAGTATCTTG
GCTTTTGGATCAGCCAATGAATGTCAAGTTTGATGAAGAAATCAAAAATG
AAGATGAATCGGTAAGGTTGCGTTTCTTATTGACTAACTTTTTGTCTGTC
TGAATTTCAGGAAATGAAAAATATACTTTACAGGAAGGAACTAAAAAAAC
TTATTCATGAAAATTTCTCCCCCCCCCTTAAGTAGAAAGAAGCAGCTAGC
AATGAGAATAATTATGTTATGCTTTTTATCAACATGGGATTTCAAATTCT
ATAATACAGTCTATAAGACTGGTGGGATTTTCCAATAGTAAAACAGTTGC
AGGCTATAATTAATTGTAAGTAACAGTTAAACAATCAAGTTATTTTGGTG
TTTTGGAATACGAAGAGAACTTATGTCGAGTAATTTATGTAACTCCCATG
TAACTTCATTCCAAAGATTTTATAAGATGATTTCTTGCGGATATCATGAA
TGAAGAACAATACAATAATGTCTCGATGACACAGTAGTATGAGATGAGAG
GAAAAAACAACTCGGTAGTCGAGAATTGAGAATACTCCATCCTTCCTAAA
AGTTATGAGGCAGATGCCAACCGTACGCAGTAATTAAGTTTCAGACAAAG
ACAACAAAACAGAAGTCTTGTTGCGCTTGTTGCGCTTACACAAAGAACTA
ACAGTTAAATGAAATTCAAGTAAAAATAGGTATTTCAGACCAAGAAATGG
AGGGACATGTACAAATCTCACGGGGGGGGGGCAATGAGAAATTGTGATTA
CAAGTAGGATAAGTTATCAGCTTGTACACAGGCTAAATAAATTCCGAATT
CCTAGAAAAATATTTCTGACTGGGAAAGTCATTTAATATAACGTTTTTTT
ATAAGAACAAACTATATAAGGCTTCGATGGCTAAAATCTTAAGAACATGT
TAAGAACATTTTAAGGCTTTGCAAACACCCGATTTCTTAGGAAAATAGGC
AAAAATGCTCAAAAACGGTGAAAATAGGAACATGTTTAGAACATTAAAAT
CCAAAAATTTAAGAACATCCGAAGGTTTCAAAATTTTTTGATGTTCTTGT
TAAAATAAACGTGTATCCCAATAGGACAGTTCATTAAAAGCTTTGATCAT
GTCTCAAATAGGACACTTTTTAATCTCTTTAACATTGTTTTGAAGCAGGT
ATGAGATCAGAAGTAATAGAAGGAGCAGACTGTTTATTACTTCGAAGAAA
GGGAGTAATCGGAGGCAAGAAAGTTGAATAAATTATGAGGCCCTTATGAG
GTGGAAGAAAACTTTCAGAGAAAAATAATCAACAAGATGATGAATTATAA
AAATTTGAAATAAAAACTTTTAAAACATAAGGAACAAGTTATAATAAATA
ATCATGGTTGGAAATAAAAAACAAAGAGAAAATGAGGACTAAAATTTATA
GCTTTTGATGGTTGATAGTGAATAAGACGTGTCTCGTTCATTGTTACTAT
GGTAACTCCTTGAAGTAAAAAGGGGGATGATGTGGCGTAATGACTTGAAA
TGGAGGAGACTTGAAAAAAATAGACTTGTTTATGAGATGTGAATAAACGT
AAAGAGGGAAATAAATGTTTGTTGACCACGAGACAGAATTGTAGTAAGGA
GGAAATGGCGTCGCACAGGTTTGGAATGGTAAGAAATCTTGATTATCTTA
AGGGCGGAGATTTTCGACTTGGTACTGAGGCTAACGCCAACAACAGATCC
GCTAGTACTGCAATTAAGGATGGAAAATGCGTTAGATAAGACGAGAAGGA
GGATACTGCGAAGATTGAATGAATAAGGAATGTCAAAATGAAAATAAAAA
TCGTGAAAATAAGTAAATAGACAGAATATTAGGATAACAAGTAATAGTCT
CTGGAGAAGTAATTATAGTAATTAGCCCGAGAAAGAAGAAATGTGAGTGC
TAATAATGATTTGTAGTAATTACTTTTCGTCATTTATCGCGGAAATATAG
TGATTGCTTTAGTATCCGCTAATAATTTTATTGCTTGTCAGCGAGAGACA
CAAGGAATTGTATTGCCAAACAAACTGAAAATTAAAACATGAACTAGATT
TCGAGCTTTATTTCAAAGGTAAGTTCAGTGGAAATTTATGGGAGAAATTT
TTACGTAAGTTTATTGAAAGTTTAAGGTGAAAGAATCATAAGTTAAACTT
GGTGAAGAAATACACGTTTTCTTATAAGAACATCCAAATTTTTTTGAAGC
TTTAGGATATTCCTAACTTTTTGGGTTTCAAGTCTAAAAATGTTCTTAAC
ATGTTCTTATTTTCCCTTTTTTTTATGACCATTTGTACCCATTTTCCTAA
GAAATTGGCTTTTTTCGAGTTCGACAAGCCTTAAAATGTTTTTAACTTGT
TCTTGTGAAAAAAATGTTTGATGCCTTTCAATAGAGAAAGAGGGAATAAA
ATTAAAGAGCGTTTTAGAAGATTTCGCACTTCATCATTTTTCATTTAGTA
GTTTCAGACTCTTTTTCAGGCGAATTCATTAGCATTGAATTGTCAAGACA
GATTTTCATATCCACAAACATGTAACAGTGTAGTACTAAGATATTTCTGG
CTTATAAAGGAATGAGAATCAAATGTATGGGGACTTCTACTAATAAGTTC
AGAAACAGCAGTTGAGAAGGTTGAGGATATCAGCTNATATGGGAACTTCT
ACTAATAAGTTCAGAAACAGCAGTTGAGAAGGTTGGGGATATCAGCTGTC
AAAACAACAGCAATAAATAATTTTCAGAACATCGCATATAAAATAAATAT
AATTTAGCAAGGTCTGGGGAAATGTAACCAATGAATATCAGTAATTTTAT
CTCCTTCTACTTTTTCAGATGACGTCATCAAGCAAACATGGTGCAGACCA
ATTCGAAATTCTCTCCTTCATCGAAAATGGAAATGGTAGCAAAATCTATG
ACGTCATTCAAAAGCAACGGAACCGAAAATACACCATGGAGGTGGTTCCC
CGTAAGAACTCAACACAAGATGAAAGCAAGAATACCAAGTTACATAAACA
TTCGCAACTGAAGGCGCCTTCTTGTTATCTGACTCAACTTAAATATTCTT
TCCAAACCAAGACGCGAAAATATTTCATACTCTCACATTTACACCGCCAA
AGAAACTTATCAGAACTTTTTCAAAAACAAAAAATCTTGGATAACAATAC
AGCAAGGTTTATAATAATCCAACTGCTTTCAGCTATCGATCATTTACACC
AATCAAACGTCTGTTATGAGAATATCAATCTTAGCGATGTATATTTTGAC
AATAAAGGTCACGTGATTCTGAAACGAACTTATAGTGGGCAGAATTATTG
GACGGTTAACGAATGTTACGGTTGTCACAAAGGAAAATGTAAAAACAAAT
ATCACATAGCCGGACAGGTCGCAAGTATGGCAAAAGCAAACGATTTTAAC
AACGTTGGCCAACTGTTCGTACATTTAATCACTGGTTCACAACATTCATA
TAGTCTGCTGGAAAGTGCAGATCGCACCACTAAAGACTTCGCATATTTAT
TACTTAGACACGATGTTGATATTTCCAAAATTAAGAACCACCCATTTGTC
AATGATATCAATTGGAATGGGGTCACTAACAAAGAACTCGACATCCCAGA
AAGCATCTCGATGTTTGTCAAGGAAACACGTGAAAGGCAATCGAGTCAAA
ATAGCATGATTATAGAGAGAAAGGATGCTGGCTCCCCTCCGGAGATCTTA
GTCGGCGTAAGAAAGCCGAGATCAAAAAGCGAAGAACCATCTCGAGTTTT
GAAAGCCAGCTCTAAGAAATCAGGAGTACGTTCAAAATCCTACAGTAGCA
ATGAACAAAAGCTTAACCAAAATTTTCCCAATGTCCATCGTTCAAAATCG
TTTAGTAAAAGTGAGAGTTATAACTCGGTCTTTCAAGATGATGTCGAGTT
GGGTACTCCTGCTAAATCGCGCAGGACAAGTATCGACATGTATCGTAAAA
GATTGGAAGAAATCTCAAAAGTCATTGATACCCATAGCAACGAGACAAAA
CAAACGACACCATCAACCAATGAAATCGAAGTAGCTAAACCACGTGAGTC
AGAATTCTTTTTCGAGAAAATGTATTCCGAAAATGAAGCATTGAGAACAA
TATTAACAAAGTATGGATTGTTAAAGGATAAGGGTCCTGAAGTGAGAAAA
CCCCAAAGACCGAACTTTCTAGACGTTAAAAAAGACGACGCGTCGATGAC
GTCATCAGGAGCTGATTCACCTGTCGAGTCGAATAATTTGTTATCCTCAA
AACGACGACAAAGTCGTAAAATTCGGAAAAACAATTTGTTGAGTCGATCA
TGTAACAACATACAAATTTTGTTCAACGAGAACAGCGATCATACAGATAG
TGTTGATGAAAATTCAAAACGATCACAACTGGATAGCTCCATGGGAAAGG
TGAGAATTTCTTTTTAAAATCGAATTCTAGGCTGGTGAGATATAAACACA
GGGCTTTCTACTATCCAAGGAAGGTCTCAACATGCTAGAAAGGGGATATA
TATAATGTCATCCTACTGGCACCTGTCAAGGCTAATGAGATTTGGACCAT
CTCAAGCATGTTATGTACTCATGTCTGATATTTCAACCACCATTAGGACT
GTTTTCAATGTTTTTATTCCAATACTTTGGAAATTACATGAAATAGATAA
AACTCATGAAAAAGTAACAGACAAGAACAAAGTGGGATAGCTTTATTCTA
AACCCCCTCAAATAAATCTGATTGATCGTTCCCATTGTTTTTACAGAAGC
AGAAAAGTGAAAGTTGTTTGACGGTCATCGGCACGACGGATGAAGATATC
GACAAAAACAACAAAGGCGGCAACAAGCTTATCGATCGATTAAATGGTCT
CAGTAAAAGTAAAACTTTTTACATGAAAAGAACCTCTTCTATGACATCAC
CATCCTCCCCTAGCGTAATGAAAAGACATTTTTCAGATTCTCACATCAAA
TCAACCAACCTTTTATCACCAAATCCAAAATACCAAGATAAGATGATATC
AGCACCACAAGCTTTGTCTTCATTATTGAAGTCCACTTCATTGATTGGTC
AGAAACAAACGAGTCATGATAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034524XLOC_034524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054804-exon-scaffold_245-1575043694:228368..228578TCONS_00054804-exon-scaffold_245-1575043694:228368..228578Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1575043694:224030..225610TCONS_00054804-exon-scaffold_245-1575043694:224030..225610Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1575043694:223355..223682TCONS_00054804-exon-scaffold_245-1575043694:223355..223682Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1510915933:228368..228578TCONS_00054804-exon-scaffold_245-1510915933:228368..228578Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1510915933:224030..225610TCONS_00054804-exon-scaffold_245-1510915933:224030..225610Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1510915933:223355..223682TCONS_00054804-exon-scaffold_245-1510915933:223355..223682Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1491911889:228368..228578TCONS_00054804-exon-scaffold_245-1491911889:228368..228578Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1491911889:224030..225610TCONS_00054804-exon-scaffold_245-1491911889:224030..225610Clytia hemisphaericaexon
TCONS_00054804-exon-scaffold_245-1491911889:223355..223682TCONS_00054804-exon-scaffold_245-1491911889:223355..223682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:223355..228578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0685862	0	2.07358	2.72365	3.59394	4.49682	0.771461	0.922883	0.711301	0.423414	0.470594	0.335553	0.365883	0.262675	0	0.256773	0.081001	0.781417	0.0918006	0	0	0.313296	0.618096	0.480504	0.305816	0.0988737	0	0.0515581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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