TCONS_00054789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054789
Unique NameTCONS_00054789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054789 ID=TCONS_00054789|Name=TCONS_00054789|organism=Clytia hemisphaerica|type=transcript|length=2203bp
ATTTCATTGGGTTAATAAAAAGACACGTTATATTTTCGGCGCATAAGATA
TTTTCTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCA
TAGAGATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCA
GTTCTGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATAC
CATTATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAA
GGTGACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATA
GTCGGTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGT
CGGCATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCA
TTGTATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTG
ATATCTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATG
CTTGTCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGA
AAATCAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACAT
GAGTTTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCA
AAGAGTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGA
ATACATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGG
TAAATGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTA
TAATATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCA
TAAGGAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAAC
CAGTGTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTT
CCATGGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATG
TCTTGGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAA
GCTTGCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTT
CTGGATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCC
ATGAAACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCC
TGATTGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCAC
TTCTACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTT
GGAACATCATaatcgaatattgttcgtcctGAACCTGTGATTCTTCTTGT
GTTTCTCAACAAATGTGCTCCCATCAATATTTGACctttgacaaagttcg
atttTCCTTTGGCATATATTTGTGTCATGACACCTCCCAAAGAATGAGCA
GCCAAATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTCTTCAGCATTTT
CAAGGTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAA
GGAAGAATTCAGGAAGACCAACCCAGGCTTTNAGTAAGAGTTGGAACATC
ATAATCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCA
ACAGAACTGCTCCCATCAATATTTGACctttgacaaagttcgatttTCCT
TTGGCATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATA
AATCTGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAGGTGT
ATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAAT
TCAGGAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTTTCTG
AAATTCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATACCAT
GAATCCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGGTGGT
TCAAGGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGATTGC
CAGAATGCTTGATACAAGGTTGTTGATactcattttcatttatttcactC
GTCTGCAATAAGAGAAAAATAGATGGAAAGTGTGaaataactttgaaaaa
atatgttaCGCTAGATTAATTATTGAAAACCAATAGGTACTAAGCAGTGC
TAG
Run BLAST on NCBI

transcript from alignment at scaffold_245:741840..744042+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054789 ID=TCONS_00054789|Name=TCONS_00054789|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_245:741840..744042+ (Clytia hemisphaerica)
ATTTCATTGGGTTAATAAAAAGACACGTTATATTTTCGGCGCATAAGATA TTTTCTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCA TAGAGATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCA GTTCTGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATAC CATTATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAA GGTGACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATA GTCGGTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGT CGGCATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCA TTGTATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTG ATATCTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATG CTTGTCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGA AAATCAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACAT GAGTTTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCA AAGAGTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGA ATACATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGG TAAATGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTA TAATATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCA TAAGGAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAAC CAGTGTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTT CCATGGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATG TCTTGGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAA GCTTGCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTT CTGGATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCC ATGAAACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCC TGATTGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCAC TTCTACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTT GGAACATCATaatcgaatattgttcgtcctGAACCTGTGATTCTTCTTGT GTTTCTCAACAAATGTGCTCCCATCAATATTTGACctttgacaaagttcg atttTCCTTTGGCATATATTTGTGTCATGACACCTCCCAAAGAATGAGCA GCCAAATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTCTTCAGCATTTT CAAGGTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAA GGAAGAATTCAGGAAGACCAACCCAGGCTTTNAGTAAGAGTTGGAACATC ATAATCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCA ACAGAACTGCTCCCATCAATATTTGACctttgacaaagttcgatttTCCT TTGGCATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATA AATCTGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAGGTGT ATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAAT TCAGGAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTTTCTG AAATTCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATACCAT GAATCCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGGTGGT TCAAGGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGATTGC CAGAATGCTTGATACAAGGTTGTTGATactcattttcatttatttcactC GTCTGCAATAAGAGAAAAATAGATGGAAAGTGTGaaataactttgaaaaa atatgttaCGCTAGATTAATTATTGAAAACCAATAGGTACTAAGCAGTGC TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034512XLOC_034512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054789-exon-scaffold_245-1491911889:741840..744042TCONS_00054789-exon-scaffold_245-1491911889:741840..744042Clytia hemisphaericaexon
TCONS_00054789-exon-scaffold_245-1510915933:741840..744042TCONS_00054789-exon-scaffold_245-1510915933:741840..744042Clytia hemisphaericaexon
TCONS_00054789-exon-scaffold_245-1575043694:741840..744042TCONS_00054789-exon-scaffold_245-1575043694:741840..744042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:741840..744042 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.231727 0 0 0 0 0 0 0.0533363 9.21633 8.87342 2.23895 5.28299 0.336647 0.437586 35.3372 28.5024 4.95336 3.2928 2.04847 4.63841 1.69633 1.17153 0 0 0 0.137395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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