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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054789 ID=TCONS_00054789|Name=TCONS_00054789|organism=Clytia hemisphaerica|type=transcript|length=2203bp
ATTTCATTGGGTTAATAAAAAGACACGTTATATTTTCGGCGCATAAGATA
TTTTCTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCA
TAGAGATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCA
GTTCTGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATAC
CATTATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAA
GGTGACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATA
GTCGGTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGT
CGGCATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCA
TTGTATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTG
ATATCTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATG
CTTGTCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGA
AAATCAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACAT
GAGTTTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCA
AAGAGTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGA
ATACATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGG
TAAATGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTA
TAATATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCA
TAAGGAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAAC
CAGTGTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTT
CCATGGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATG
TCTTGGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAA
GCTTGCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTT
CTGGATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCC
ATGAAACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCC
TGATTGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCAC
TTCTACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTT
GGAACATCATaatcgaatattgttcgtcctGAACCTGTGATTCTTCTTGT
GTTTCTCAACAAATGTGCTCCCATCAATATTTGACctttgacaaagttcg
atttTCCTTTGGCATATATTTGTGTCATGACACCTCCCAAAGAATGAGCA
GCCAAATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTCTTCAGCATTTT
CAAGGTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAA
GGAAGAATTCAGGAAGACCAACCCAGGCTTTNAGTAAGAGTTGGAACATC
ATAATCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCA
ACAGAACTGCTCCCATCAATATTTGACctttgacaaagttcgatttTCCT
TTGGCATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATA
AATCTGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAGGTGT
ATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAAT
TCAGGAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTTTCTG
AAATTCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATACCAT
GAATCCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGGTGGT
TCAAGGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGATTGC
CAGAATGCTTGATACAAGGTTGTTGATactcattttcatttatttcactC
GTCTGCAATAAGAGAAAAATAGATGGAAAGTGTGaaataactttgaaaaa
atatgttaCGCTAGATTAATTATTGAAAACCAATAGGTACTAAGCAGTGC
TAG Run BLAST on NCBI transcript from alignment at scaffold_245:741840..744042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054789 ID=TCONS_00054789|Name=TCONS_00054789|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_245:741840..744042+ (Clytia hemisphaerica)
ATTTCATTGGGTTAATAAAAAGACACGTTATATTTTCGGCGCATAAGATA
TTTTCTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCA
TAGAGATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCA
GTTCTGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATAC
CATTATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAA
GGTGACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATA
GTCGGTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGT
CGGCATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCA
TTGTATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTG
ATATCTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATG
CTTGTCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGA
AAATCAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACAT
GAGTTTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCA
AAGAGTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGA
ATACATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGG
TAAATGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTA
TAATATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCA
TAAGGAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAAC
CAGTGTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTT
CCATGGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATG
TCTTGGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAA
GCTTGCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTT
CTGGATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCC
ATGAAACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCC
TGATTGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCAC
TTCTACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTT
GGAACATCATaatcgaatattgttcgtcctGAACCTGTGATTCTTCTTGT
GTTTCTCAACAAATGTGCTCCCATCAATATTTGACctttgacaaagttcg
atttTCCTTTGGCATATATTTGTGTCATGACACCTCCCAAAGAATGAGCA
GCCAAATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTCTTCAGCATTTT
CAAGGTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAA
GGAAGAATTCAGGAAGACCAACCCAGGCTTTNAGTAAGAGTTGGAACATC
ATAATCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCA
ACAGAACTGCTCCCATCAATATTTGACctttgacaaagttcgatttTCCT
TTGGCATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATA
AATCTGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAGGTGT
ATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAAT
TCAGGAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTTTCTG
AAATTCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATACCAT
GAATCCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGGTGGT
TCAAGGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGATTGC
CAGAATGCTTGATACAAGGTTGTTGATactcattttcatttatttcactC
GTCTGCAATAAGAGAAAAATAGATGGAAAGTGTGaaataactttgaaaaa
atatgttaCGCTAGATTAATTATTGAAAACCAATAGGTACTAAGCAGTGC
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054789-exon-scaffold_245-1491911889:741840..744042 | TCONS_00054789-exon-scaffold_245-1491911889:741840..744042 | Clytia hemisphaerica | exon |
| TCONS_00054789-exon-scaffold_245-1510915933:741840..744042 | TCONS_00054789-exon-scaffold_245-1510915933:741840..744042 | Clytia hemisphaerica | exon |
| TCONS_00054789-exon-scaffold_245-1575043694:741840..744042 | TCONS_00054789-exon-scaffold_245-1575043694:741840..744042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:741840..744042 + |
Blast
The following BLAST results are available for this feature:
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