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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054778 ID=TCONS_00054778|Name=TCONS_00054778|organism=Clytia hemisphaerica|type=transcript|length=2661bpRun BLAST on NCBI protein sequence of TCONS_00054778-protein >TCONS_00054778-protein ID=TCONS_00054778-protein|Name=TCONS_00054778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp MGQHLSEPVTTKETDGVANSQYRCASSSMQGWRISMEDAHTHILSMKEDKRun BLAST on NCBI transcript from alignment at scaffold_245:452757..471433+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054778 ID=TCONS_00054778|Name=TCONS_00054778|organism=Clytia hemisphaerica|type=transcript|length=18677bp|location=Sequence derived from alignment at scaffold_245:452757..471433+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:452757..471433+ >TCONS_00054778 ID=TCONS_00054778|Name=TCONS_00054778|organism=Clytia hemisphaerica|type=CDS|length=12804bp|location=Sequence derived from alignment at scaffold_245:452757..471433+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054778 vs. Swiss-Prot (Human)
Match: PPM1A (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 6.318e-59 Identity = 120/299 (40.13%), Postives = 169/299 (56.52%), Query Frame = 2
Query: 107 MGQHLSEPVTTKETDGVANSQYRCASSSMQGWRISMEDAHTHILSMKEDKDA-AFFAVFDGHGGSSVAHYGGEHLHKDIFDSDLYRQG-------KYTDAIQKGFLACDENMQFDDSVKD--ETAGAAAVSVLIKDKKMYCGNCGDSRAIACVSGVAQELSYDHKPSNEGESRRIVSAGGWVEFNRVNGNLALSRALGDYAFKRNSKKPAEEQIVTAFPDVI-IKDILPEHEFILIACDGIWDVMDNQEVADFVRQRIASKTPPEQICEELLDHCLAPDCQMGGLGCDNMTAVLVCLLN 970
MG L +P K + R SSMQGWR+ MEDAHT ++ + ++ +FFAV+DGH GS VA Y EHL I ++ ++ + I+ GFL DE+M+ K + +G+ AV VLI + Y NCGDSR + C + + DHKPSN E RI +AGG V RVNG+LA+SRALGD+ +K K EQ+V+ P+V I+ + +FI++ACDGIWDVM N+E+ DFVR R+ E++C E++D CL + DNM+ +L+C N
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR------DNMSVILICFPN 293 The following BLAST results are available for this feature:
BLAST of TCONS_00054778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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