|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054760 ID=TCONS_00054760|Name=TCONS_00054760|organism=Clytia hemisphaerica|type=transcript|length=751bp
TTTCTATCTTTTTCAGCGTTTACAAAAGTCGGATATAAAACATTACagtt
acaaaaaaaaagagggataaaaaatatttgcaaaCTCTTCCTATACATAG
AGAAATATGGCAAAGTTTGCCATTCTGGTGTTTTGTTTAACGATAATCAG
TGTTGATGCTTTTTTGGCAAGTATACCTATCCCAAAGAAGGGAAAAAGAA
CGTCTATGGAGCCTTttctgaaaaatgaagaattttgtcGAGTAATCGTC
CGAAGTTGCAAAGAAGTGTTAACAAGAcgagaaaatttgaaagatgacTC
AAAACCGGACATTGCAGTACCCGATAACGGCTTGACCCGGTGGTTATGAC
ATATGATATCTTTGGTAATTTCCAGTATAGACAACTAACATTTTATAGAA
AATTATAGATTTTGTACACTTGTATACATTTAGAGAGTTACAAATCCCAA
GAAGTGATGTTTTGGCAGTTAAGAATCATCCTTACGTTATcgcttgattt
tttaatttgttaacATTTTTCACCAGGGGTgtgaacttttgaaaaaatat
tatgtCATATGTAACGTAATGCAATATCTTGTCGATTTTCTTTACCCATA
GTGCTCTGTTCATTTGTAGCACTGGTCTTACACTGTAAATATTTAGTCCT
TTACATAAATCGGTTTCTGTATATAAATGTTTCCACCAATAAGATCAAcg
gaatttcttcaaaatttctctGAGCGCATTGTCcctgaaatagaaaaaat
a Run BLAST on NCBI transcript from alignment at scaffold_245:157288..158353+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054760 ID=TCONS_00054760|Name=TCONS_00054760|organism=Clytia hemisphaerica|type=transcript|length=1066bp|location=Sequence derived from alignment at scaffold_245:157288..158353+ (Clytia hemisphaerica)
TTTCTATCTTTTTCAGCGTTTACAAAAGTCGGATATAAAACATTACagtt
acaaaaaaaaagagggataaaaaatatttgcaaaCTCTTCCTATACATAG
AGAAATATGGCAAAGTTTGCCATTCTGGTGTTTTGTTTAACGATAATCAG
TGTTGATGCTTTTTTGGCAAGTATACCTATCCCAAAGAAGGGAAAAAGAA
CGTCTATGGTAAGacttattttgtttaaaaaatatcaaagtactGACACA
ACCATGTGTCACAGCCCCCTCGGGACCCTCTCCTTACTGGAAGGTTTGAT
CAAAAACAATTCTTATTGACAATGAATGATAAAATGCCCTACAAACAATC
CCCTGTctgtttttttgctgaaaacaaTTTTATGTTCCCATAGAAATTTg
ttctagaattttttttcccacCTGGTAGCACGAAGCACCGCCAGGCTACA
AGGGCACAGAAGTAGGGGTATATTTTTTGATGACCTACAACAATCATCAT
CGATTCTCGACTTTTCTTTGTAGGAGCCTTttctgaaaaatgaagaattt
tgtcGAGTAATCGTCCGAAGTTGCAAAGAAGTGTTAACAAGAcgagaaaa
tttgaaagatgacTCAAAACCGGACATTGCAGTACCCGATAACGGCTTGA
CCCGGTGGTTATGACATATGATATCTTTGGTAATTTCCAGTATAGACAAC
TAACATTTTATAGAAAATTATAGATTTTGTACACTTGTATACATTTAGAG
AGTTACAAATCCCAAGAAGTGATGTTTTGGCAGTTAAGAATCATCCTTAC
GTTATcgcttgattttttaatttgttaacATTTTTCACCAGGGGTgtgaa
cttttgaaaaaatattatgtCATATGTAACGTAATGCAATATCTTGTCGA
TTTTCTTTACCCATAGTGCTCTGTTCATTTGTAGCACTGGTCTTACACTG
TAAATATTTAGTCCTTTACATAAATCGGTTTCTGTATATAAATGTTTCCA
CCAATAAGATCAAcggaatttcttcaaaatttctctGAGCGCATTGTCcc
tgaaatagaaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054760-exon-scaffold_245-1491911889:157288..157495 | TCONS_00054760-exon-scaffold_245-1491911889:157288..157495 | Clytia hemisphaerica | exon |
| TCONS_00054760-exon-scaffold_245-1510915933:157288..157495 | TCONS_00054760-exon-scaffold_245-1510915933:157288..157495 | Clytia hemisphaerica | exon |
| TCONS_00054760-exon-scaffold_245-1575043694:157288..157495 | TCONS_00054760-exon-scaffold_245-1575043694:157288..157495 | Clytia hemisphaerica | exon |
| TCONS_00054760-exon-scaffold_245-1491911889:157811..158353 | TCONS_00054760-exon-scaffold_245-1491911889:157811..158353 | Clytia hemisphaerica | exon |
| TCONS_00054760-exon-scaffold_245-1510915933:157811..158353 | TCONS_00054760-exon-scaffold_245-1510915933:157811..158353 | Clytia hemisphaerica | exon |
| TCONS_00054760-exon-scaffold_245-1575043694:157811..158353 | TCONS_00054760-exon-scaffold_245-1575043694:157811..158353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:157288..158353 + |
Blast
The following BLAST results are available for this feature:
|
