TCONS_00054735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054735
Unique NameTCONS_00054735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054735 ID=TCONS_00054735|Name=TCONS_00054735|organism=Clytia hemisphaerica|type=transcript|length=372bp
ATTAGATATGGCGAGCCAGAAAAAGAGGAGCACTAGATACAAGGAAGCAG
AAATTGACCGAAAAAGTATTCGAAAACAACTTTTAGATTCTAATTTCGAT
GAGCATCATGTCGCTTTGAAGATGACTTACCAAGATCAAATGAATTTGAC
TTCGTATAAACTAAACGAATATATCGATAGCGTTTTACTCGATAAACGAC
GACAAGATGATGAATTATATCGAGCCCTCGATTTACTGGAAGAAGAGAAA
TTCGAAGTGCAACGACTTTTACAACTTCAGGAATTCAGCTTACCAAGCTA
TCTTGTCAAATATTTCGAACAATCACTGATCGtcaataaaacaaagaaag
tccAACGTTTAATAGATATCAG
Run BLAST on NCBI

protein sequence of TCONS_00054735-protein

>TCONS_00054735-protein ID=TCONS_00054735-protein|Name=TCONS_00054735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
LDMASQKKRSTRYKEAEIDRKSIRKQLLDSNFDEHHVALKMTYQDQMNLT
SYKLNEYIDSVLLDKRRQDDELYRALDLLEEEKFEVQRLLQLQEFSLPSY
LVKYFEQSLIVNKTKKVQRLIDI
Run BLAST on NCBI

transcript from alignment at scaffold_244:69603..69974

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054735 ID=TCONS_00054735|Name=TCONS_00054735|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_244:69603..69974 (Clytia hemisphaerica)
CTGATATCTATTAAACGTTggactttctttgttttattgaCGATCAGTGA
TTGTTCGAAATATTTGACAAGATAGCTTGGTAAGCTGAATTCCTGAAGTT
GTAAAAGTCGTTGCACTTCGAATTTCTCTTCTTCCAGTAAATCGAGGGCT
CGATATAATTCATCATCTTGTCGTCGTTTATCGAGTAAAACGCTATCGAT
ATATTCGTTTAGTTTATACGAAGTCAAATTCATTTGATCTTGGTAAGTCA
TCTTCAAAGCGACATGATGCTCATCGAAATTAGAATCTAAAAGTTGTTTT
CGAATACTTTTTCGGTCAATTTCTGCTTCCTTGTATCTAGTGCTCCTCTT
TTTCTGGCTCGCCATATCTAAT

Coding sequence (CDS) from alignment at scaffold_244:69603..69974

>TCONS_00054735 ID=TCONS_00054735|Name=TCONS_00054735|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_244:69603..69974 (Clytia hemisphaerica)
GATATCTATTAAACGTTggactttctttgttttattgaCGATCAGTGATT
GTTCGAAATATTTGACAAGATAGCTTGGTAAGCTGAATTCCTGAAGTTGT
AAAAGTCGTTGCACTTCGAATTTCTCTTCTTCCAGTAAATCGAGGGCTCG
ATATAATTCATCATCTTGTCGTCGTTTATCGAGTAAAACGCTATCGATAT
ATTCGTTTAGTTTATACGAAGTCAAATTCATTTGATCTTGGTAAGTCATC
TTCAAAGCGACATGATGCTCATCGAAATTAGAATCTAAAAGTTGTTTTCG
AATACTTTTTCGGTCAATTTCTGCTTCCTTGTATCTAGTGCTCCTCTTTT
TCTGGCTCGCCATATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034483XLOC_034483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054735-proteinTCONS_00054735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054735-exon-scaffold_244-1491911889:69603..69974TCONS_00054735-exon-scaffold_244-1491911889:69603..69974Clytia hemisphaericaexon
TCONS_00054735-exon-scaffold_244-1510915933:69603..69974TCONS_00054735-exon-scaffold_244-1510915933:69603..69974Clytia hemisphaericaexon
TCONS_00054735-exon-scaffold_244-1575043694:69603..69974TCONS_00054735-exon-scaffold_244-1575043694:69603..69974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_244supercontigscaffold_244:69603..69974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.652965	0.212248	0.24644	1.20552	0.29352	0	0	0.261973	0	0	0	0.724785	0	0.15033	0	0	1.14375	0	0.925488	0.726342	0	0.307937	0	0	65.6659	34.8294	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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