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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054727 ID=TCONS_00054727|Name=TCONS_00054727|organism=Clytia hemisphaerica|type=transcript|length=1127bp
gaaattgtttggCGCCAGAGTTCATTCAAAATGGTGTTTTCAAGAGGGGA
AGTTACAAAAAGTCTACGAAACCAACAACCAGATCTTAGCTCGCAGATTA
TTTCTTTGGACTATCCTCGCCACTGAGAACGTATCAACTTCCAAAGCATA
CATCAAAAACCAAATGGACAATAAAGATAAGTATTTTCATTGATGACATC
ACTTTACATCAATACACGTAATTGACATATTTGTTGAcaaatcaaaaaca
attcaTCACATTTCACGCCTTCATGTCCCAAAGGTAAAcaatataaaatt
aaatataaaaacCAAGTAATTGTTTTAATTGAATCAAGTAATTgcgaaaa
aaagaattatttaatatcatatttttttaaagtttaatttttacGTCTAA
GTAAAAGTCGATCATCTATGCATAAATCTGTTTGCTTAAAACAATACACA
AATCCCTTAAAAATACAGGCAATTCATTTCAGTTCTTTATCAACATTTTG
CCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAACGAAAC
AATCAAGTGACGTAACATGATGATTGGTCTGAATAACTGCAATGTTTTTG
CAAGCTCTAGCATTTTTGaagcagcgattcagacctcGATAACAATGAAa
taatgtcaatctggctttacaaataaaatttcaatcccCGTTTTTACCAT
TGTAAATACGTAAAGTGCAAGTAAACTTTTTCAGGTCTTTACGAAAATTC
GGTTtataattacacccctgtctcagtgacttgTTAAGATTTTGTGACCG
GTGGGGATCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACTAACAAT
ATCCTTTAAAATTTATCTTATTTATGAACAATATTAATTTTTGTGACTAA
GTGAtgtaattaacaattttatattTAGTATTTATTATATACAATTAATT
GACTAACTTAAAACTATTTAGTATATACACAATATTCATGTACcaaacat
ttatttattttttcaactaataagattaatgacattttagaataagagaa
aatttaaaaatctatttcaTTTATCTACATTTTCATTTCTCAATCCAGTT
CCCAAATGCAATCATTTGGATTGAAAC Run BLAST on NCBI transcript from alignment at scaffold_244:2000..3832- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054727 ID=TCONS_00054727|Name=TCONS_00054727|organism=Clytia hemisphaerica|type=transcript|length=1833bp|location=Sequence derived from alignment at scaffold_244:2000..3832- (Clytia hemisphaerica)
GAAATTGTTTGGCGCCAGAGTTCATTCAAAATGGTGTTTTCAAGAGGGGA
AGTTACAAAAAGTCTACGAAACCAACAACCAGGTAAATTTTCTTGTTAAT
TTCTAATTGTGAAATAAAGGAAATTTTCTATTCTTTCAATTGACCAATTT
GCTTTTTCAATTGAAAAGTCTTTTAAGTTATAATTTTAACTAGGAAATAT
TCAAGACTGACAAAGTTTTCTCTATCTTAGATCTTAGCTCGCAGATTATT
TCTTTGGACTATCCTCGCCACTGAGAACGTATCAACTTCCAAAGCATACA
TCAAAAACCAAATGGACAATAAAGATAAGTATTTTCGTTAGCATATTTAT
TTTGATCGATAATTTCACTTTGTAGTGTAATAACCAGAAAAAAGTTTTTT
ATTAGTACGTTGTAATCCAGTCATACATATTTAGCATCAACAAATTTATA
CAAGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAA
GAACTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATTTTTCTGTCTTTT
TGAAAATGAGAGTTTTTTATTGCCAAGTTTTCCAGTCATCCAGTCATACA
TATTTTGTATTAAAAATATATGTAAGCACACTTGTTTGATTTGACGTTTT
AAGACGGGCAAAATCTTCTAAAGAACTACCCTTTTGGAGGGTCGGTTCGG
TGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTATTAAAAA
ATATATGTAAGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGAAATC
TTAAGTACTATACTACTCTTTAGGATACGAGACTTCTTCTACATATTTGA
AAGTTCTGTTGCGTAGACTGAATTTATATCTGATTTTCTTTCAGATTGAT
GACATCACTTTACATCAATACACGTAATTGACATATTTGTTGACAAATCA
AAAACAATTCATCACATTTCACGCCTTCATGTCCCAAAGGTAAACAATAT
AAAATTAAATATAAAAACCAAGTAATTGTTTTAATTGAATCAAGTAATTG
CGAAAAAAAGAATTATTTAATATCATATTTTTTTAAAGTTTAATTTTTAC
GTCTAAGTAAAAGTCGATCATCTATGCATAAATCTGTTTGCTTAAAACAA
TACACAAATCCCTTAAAAATACAGGCAATTCATTTCAGTTCTTTATCAAC
ATTTTGCCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAA
CGAAACAATCAAGTGACGTAACATGATGATTGGTCTGAATAACTGCAATG
TTTTTGCAAGCTCTAGCATTTTTGAAGCAGCGATTCAGACCTCGATAACA
ATGAAATAATGTCAATCTGGCTTTACAAATAAAATTTCAATCCCCGTTTT
TACCATTGTAAATACGTAAAGTGCAAGTAAACTTTTTCAGGTCTTTACGA
AAATTCGGTTTATAATTACACCCCTGTCTCAGTGACTTGTTAAGATTTTG
TGACCGGTGGGGATCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACT
AACAATATCCTTTAAAATTTATCTTATTTATGAACAATATTAATTTTTGT
GACTAAGTGATGTAATTAACAATTTTATATTTAGTATTTATTATATACAA
TTAATTGACTAACTTAAAACTATTTAGTATATACACAATATTCATGTACC
AAACATTTATTTATTTTTTCAACTAATAAGATTAATGACATTTTAGAATA
AGAGAAAATTTAAAAATCTATTTCATTTATCTACATTTTCATTTCTCAAT
CCAGTTCCCAAATGCAATCATTTGGATTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054727-exon-scaffold_244-1575043694:3751..3832 | TCONS_00054727-exon-scaffold_244-1575043694:3751..3832 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1575043694:3497..3602 | TCONS_00054727-exon-scaffold_244-1575043694:3497..3602 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1575043694:2000..2938 | TCONS_00054727-exon-scaffold_244-1575043694:2000..2938 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1510915933:3751..3832 | TCONS_00054727-exon-scaffold_244-1510915933:3751..3832 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1510915933:3497..3602 | TCONS_00054727-exon-scaffold_244-1510915933:3497..3602 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1510915933:2000..2938 | TCONS_00054727-exon-scaffold_244-1510915933:2000..2938 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1491911889:3751..3832 | TCONS_00054727-exon-scaffold_244-1491911889:3751..3832 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1491911889:3497..3602 | TCONS_00054727-exon-scaffold_244-1491911889:3497..3602 | Clytia hemisphaerica | exon |
| TCONS_00054727-exon-scaffold_244-1491911889:2000..2938 | TCONS_00054727-exon-scaffold_244-1491911889:2000..2938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:2000..3832 - |
Blast
The following BLAST results are available for this feature:
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