TCONS_00054705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054705
Unique NameTCONS_00054705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054705 ID=TCONS_00054705|Name=TCONS_00054705|organism=Clytia hemisphaerica|type=transcript|length=500bp
AAGATCGTCGAAATATTCCTACAACATCGActctattttcttgttgtttt
ttatttaaaaatccaaggaaatgtttatttttgggttatgcttcttttta
tacatatgtaccaaatttcatgcttttatcaccatctgaagtattctatc
gtttttatgtgctaacagacctcactatatTGAACTATAATTAAGTTAAG
TCTGTTCCAAAATTTCGATATACAGTATAACACATGATAATTTTGATTTG
ATGAATGcaaaattcttttaataaatTAGAAAACTGAAGTTAAACGAAGA
AACTGGCGACTGcatgaaaaaatcttgaatttttacTCAACTAAAACTTG
TAAGCATATAAGGAAAGGACATTTTTAGAAATAAAGTAATAGGAAAATGT
TCATCAACATCACACTTCTTGGTAATGGAAGGTAATGGTGTTGACATATG
GCATGACAAATACCGATTTGAAAAACAATGTAATTTTTAAGTAATTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_243:957790..958289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054705 ID=TCONS_00054705|Name=TCONS_00054705|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at scaffold_243:957790..958289 (Clytia hemisphaerica)
CTTTAATTACTTAAAAATTACATTGTTTTTCAAATCGGTATTTGTCATGC
CATATGTCAACACCATTACCTTCCATTACCAAGAAGTGTGATGTTGATGA
ACATTTTCCTATTACTTTATTTCTAAAAATGTCCTTTCCTTATATGCTTA
CAAGTTTTAGTTGAgtaaaaattcaagattttttcatgCAGTCGCCAGTT
TCTTCGTTTAACTTCAGTTTTCTAatttattaaaagaattttgCATTCAT
CAAATCAAAATTATCATGTGTTATACTGTATATCGAAATTTTGGAACAGA
CTTAACTTAATTATAGTTCAatatagtgaggtctgttagcacataaaaac
gatagaatacttcagatggtgataaaagcatgaaatttggtacatatgta
taaaaagaagcataacccaaaaataaacatttccttggatttttaaataa
aaaacaacaagaaaatagagTCGATGTTGTAGGAATATTTCGACGATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034466XLOC_034466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054705-exon-scaffold_243-1491911889:957790..958289TCONS_00054705-exon-scaffold_243-1491911889:957790..958289Clytia hemisphaericaexon
TCONS_00054705-exon-scaffold_243-1510915933:957790..958289TCONS_00054705-exon-scaffold_243-1510915933:957790..958289Clytia hemisphaericaexon
TCONS_00054705-exon-scaffold_243-1575043694:957790..958289TCONS_00054705-exon-scaffold_243-1575043694:957790..958289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:957790..958289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138433	0.212936	0.0664365	0.583153	0.395642	0.39961	1.17603	1.25008	0.107501	0	0.123518	0.356553	0.717031	0.310607	0.462441	0.169408	0.634229	0.875522	0.770739	0.626369	2.22519	2.30577	0.420318	2.04614	0.476554	1.12286	1.00303	1.46498	0	0.173184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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