TCONS_00054703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054703
Unique NameTCONS_00054703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054703 ID=TCONS_00054703|Name=TCONS_00054703|organism=Clytia hemisphaerica|type=transcript|length=564bp
TGGCACAAGCTTGGCATGATCGTAGAGGTTGGAGACAATGATCAATACAT
TATTCGTGTACTTGGATCCAATCAAGTCACACTTCGCAACCGAAAACACC
TCAAGAAAGTGAACTCGCACCCTACATTTCAACATCCAATACCATTAGTA
GTTCACCCACTTGACGAATCCAATCAAACTCCTACGCCAACTGCTCAACC
AACTTTTGTCAACCCAGAACCCACCATCAACCATTCTGACGCCCAGGGGG
ACTCAAACCAACAGTCCACCAACGACACGTCAGAAACAGTTACTGAATGT
GGTAAGGGTATGAACAGTACACCCATTGCAGGTGAACCAAATTCAACAAA
TCAGGTTCAGCCTGGGGACACTACAACGAACGAACAAATTCAAGAACGTC
CGAAACGTGACAGAAAACCCCCTCAGTGGCACAAAGACTACGTTTTCAAA
TAATGAACCTCGTGACCTCGGCTGGGGGGGATGTTCAGTGATGATATCTA
GACTTTATGTTAACCTTGTATATATTACTATATTTTGTTCTTCCTTTGTT
CTTTCAGTTAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00054703-protein

>TCONS_00054703-protein ID=TCONS_00054703-protein|Name=TCONS_00054703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
WHKLGMIVEVGDNDQYIIRVLGSNQVTLRNRKHLKKVNSHPTFQHPIPLV
VHPLDESNQTPTPTAQPTFVNPEPTINHSDAQGDSNQQSTNDTSETVTEC
GKGMNSTPIAGEPNSTNQVQPGDTTTNEQIQERPKRDRKPPQWHKDYVFK
Run BLAST on NCBI

transcript from alignment at scaffold_243:862425..862988

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054703 ID=TCONS_00054703|Name=TCONS_00054703|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_243:862425..862988 (Clytia hemisphaerica)
GTTTTAACTGAAAGAACAAAGGAAGAACAAAATATAGTAATATATACAAG
GTTAACATAAAGTCTAGATATCATCACTGAACATCCCCCCCAGCCGAGGT
CACGAGGTTCATTATTTGAAAACGTAGTCTTTGTGCCACTGAGGGGGTTT
TCTGTCACGTTTCGGACGTTCTTGAATTTGTTCGTTCGTTGTAGTGTCCC
CAGGCTGAACCTGATTTGTTGAATTTGGTTCACCTGCAATGGGTGTACTG
TTCATACCCTTACCACATTCAGTAACTGTTTCTGACGTGTCGTTGGTGGA
CTGTTGGTTTGAGTCCCCCTGGGCGTCAGAATGGTTGATGGTGGGTTCTG
GGTTGACAAAAGTTGGTTGAGCAGTTGGCGTAGGAGTTTGATTGGATTCG
TCAAGTGGGTGAACTACTAATGGTATTGGATGTTGAAATGTAGGGTGCGA
GTTCACTTTCTTGAGGTGTTTTCGGTTGCGAAGTGTGACTTGATTGGATC
CAAGTACACGAATAATGTATTGATCATTGTCTCCAACCTCTACGATCATG
CCAAGCTTGTGCCA

Coding sequence (CDS) from alignment at scaffold_243:862425..862988

>TCONS_00054703 ID=TCONS_00054703|Name=TCONS_00054703|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_243:862425..862988 (Clytia hemisphaerica)
TTATTTGAAAACGTAGTCTTTGTGCCACTGAGGGGGTTTTCTGTCACGTT
TCGGACGTTCTTGAATTTGTTCGTTCGTTGTAGTGTCCCCAGGCTGAACC
TGATTTGTTGAATTTGGTTCACCTGCAATGGGTGTACTGTTCATACCCTT
ACCACATTCAGTAACTGTTTCTGACGTGTCGTTGGTGGACTGTTGGTTTG
AGTCCCCCTGGGCGTCAGAATGGTTGATGGTGGGTTCTGGGTTGACAAAA
GTTGGTTGAGCAGTTGGCGTAGGAGTTTGATTGGATTCGTCAAGTGGGTG
AACTACTAATGGTATTGGATGTTGAAATGTAGGGTGCGAGTTCACTTTCT
TGAGGTGTTTTCGGTTGCGAAGTGTGACTTGATTGGATCCAAGTACACGA
ATAATGTATTGATCATTGTCTCCAACCTCTACGATCATGCCAAGCTTGTG
CCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034464XLOC_034464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054703-exon-scaffold_243-1491911889:862425..862988TCONS_00054703-exon-scaffold_243-1491911889:862425..862988Clytia hemisphaericaexon
TCONS_00054703-exon-scaffold_243-1510915933:862425..862988TCONS_00054703-exon-scaffold_243-1510915933:862425..862988Clytia hemisphaericaexon
TCONS_00054703-exon-scaffold_243-1575043694:862425..862988TCONS_00054703-exon-scaffold_243-1575043694:862425..862988Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054703-proteinTCONS_00054703-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:862425..862988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08042	0.422752	1.05897	1.33638	0.134771	0	0	0	0.0842152	0.104314	0	0.250349	0	0	0.283739	0.669889	0	0.153791	0	0.222336	0.19325	0	0.87043	0.596473	0.107298	0	0.274068	0	0.44369	0.45205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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