|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054700 ID=TCONS_00054700|Name=TCONS_00054700|organism=Clytia hemisphaerica|type=transcript|length=2335bp
CGAATTTGCGTCAAAGCACTTGAAAGGCTTCTATTTCTCGAAAATCGTCA
AAGTGGAACTCACTAAGAAACGAGATGAAAGATCCCGGTTTTTAGTGAGG
TACTCGCTAGTTTTCCCATTGCAGAGGAAATATTCATCCGCGTCTTTGCG
GCTCTTATCCCCAGCCTAAAAAGTAGGGCGATGAAAAAAATCATCCTGGT
CCAAATGGCGCTTAAAGGAAGAATCAAGTTTTCCCATTTTCAATGTGCAG
TAAGTCGTGTATATTATAAAAGAAAATAAATTTACATGGTTTTTCGGTTA
TATGATTATAAGATGAAATGGACACTATTTTATAGAATTATAAAAATCAT
AAAGTCACTGGGATCTTGTGGTCATCATTCATGTTttgtttcaaacaaaa
aatgatGACCACAAGAACAAGGATTGACTCCAGGGGTTATAAAAACTCTC
TACCAACTCAAAGGCTCAAACACATCAGTCTATGCTTGTCGTACATACTt
gttccttttctttttctaaagtCAAAAGTTGTTCTTGGAGTGTTTCCATT
TCTCTTGATTGGTCTCTCATTAATTTGCGACCGATTACGGTTGAAACTTT
ACGACTGGCTGATCCATTATTGTTGTTACCAAAGATAATGTTATTAGATC
CAACAGTCATGATACTGACTTCAGTTCTACTTAATTTAGCTTTCATTTTA
CGTTTGATCAATGACTTAACAGCTTTCCTTAGTGAACGTGTGAAGACAAG
ATACAGGATCGGATTCAGACATGACACCATAAACGGTAATATAGACATCA
ACCAGTTGATGATACCAAGGAAGTAGTAGTCGTTTAACACTTCGTAAACA
TTGATAAAGAGGAAGAAACCCCAACAACCTAAGAAAGGTAACACAACCAT
TGCAACATTGATGGCTAGACGTATTTCACGACATCTGATATTATTGTGGC
GATATTTAAGATTGTCATCATAAGATGAAGAATCACTTGATGAATCGTTA
TCTTGTCCATTGTTATCATAAGTCCTTTTCAAGAACACAGCCAGCATTCG
TAAACGTTTTCTATCCTCTGATAGATTCTTGTATGCACATACTAAGACCA
TACTGTAGCAGACAACGATGGTGGAGATAGGGAATACCAAGAGGACGATA
GCTGCAACGACAAATACACAATTTGTGTATGAATGAGCTGGTATGAAGAT
TCGTGACATCGAGAATAGGAAGAAGAATAATCCAACTGACCAGATGATGT
AAACAATAAGTTTAGATCTCTTTGGTGATACCAGCGATGGGTATTTCAGT
GGCCTGGTGACAGCTACTGCACGTTCAATACTGATAGCTGTGATTTGGAG
AAGAACCAGAGCTGAGAAGAACATATCTGTAGATGGGTGGAAATACAAAT
CCACTGTCTTTGACAATGAGATTCGAGCTTGAATACAAATAAACCAGAAA
ACATATTGTAGCATAACTCCAAGGTCTGCAAATGCTAGACTCGTCAGGAA
ATTGCCAGTTTGTcgtggaagacattgtaatTTAAGAATAGCATAAAGGA
CAGTGAAGTTACCTAATAGTCCAAGTGGTAGTAGAATTCCTAATAGAACG
TAAGTGAGAAGTTCGTATTGTTTTAGAGGTGATTCTTCTTCTAGACTTGG
ACAAATATGGTGCATTTCATAGGTGGTTGGTTGCAGAACATCCTGGCAAA
GATGGTAGCCAACATGGTACGATCTCTGATCGCAACAGATAGGATGGAGA
TCGTTTATGACCGATTGATCGATTGTACCAAATCGAATATCGTTGAAATG
TCGACATAATACCAAAGCTGCACGATGAATGTCAATATGGGAAAAGTTCT
TCAGTGTGGTGTAAACTTCAATGAATATTGATGTGCAGTTCgcaatcatt
ttgatttttcaataaacattaaactaaaagaCAACTAAAACAgctctttt
tctttatcaataaccaaatattttcttcaaataaaaTATGACTGTGAAGA
CTGAAGAGGGATCTGTTTAAGGATTACGTAATGTGTGTCTCCTTTTAGTT
TATTATGTCTATTTCATTGACTTGCTTTTAACTGGCACGAGACGAACATT
GATGATATGAAAGAAGTCCTGCGGTTGCCTCTCCCTCTGAGCTTTTATGT
CCAACTAAATAGAACAAAGTATGTGTCCTTCGATTTTTAAAGATGCTTAT
TTCCCTATTTGATTACTTTCCCTTGTTCCTTTATTGTTTCTCCTTTTGTT
GTTTAAACTacaatgaaaataacaaaagaagctgatgaaaaatgaagcag
aaaAAATGCTTCAACGTACTAGTACTTGAAAAAAT Run BLAST on NCBI protein sequence of TCONS_00054700-protein >TCONS_00054700-protein ID=TCONS_00054700-protein|Name=TCONS_00054700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MIANCTSIFIEVYTTLKNFSHIDIHRAALVLCRHFNDIRFGTIDQSVIND
LHPICCDQRSYHVGYHLCQDVLQPTTYEMHHICPSLEEESPLKQYELLTY
VLLGILLPLGLLGNFTVLYAILKLQCLPRQTGNFLTSLAFADLGVMLQYV
FWFICIQARISLSKTVDLYFHPSTDMFFSALVLLQITAISIERAVAVTRP
LKYPSLVSPKRSKLIVYIIWSVGLFFFLFSMSRIFIPAHSYTNCVFVVAA
IVLLVFPISTIVVCYSMVLVCAYKNLSEDRKRLRMLAVFLKRTYDNNGQD
NDSSSDSSSYDDNLKYRHNNIRCREIRLAINVAMVVLPFLGCWGFFLFIN
VYEVLNDYYFLGIINWLMSILPFMVSCLNPILYLVFTRSLRKAVKSLIKR
KMKAKLSRTEVSIMTVGSNNIIFGNNNNGSASRKVSTVIGRKLMRDQSRE
METLQEQLLTLEKEKEQVCTTSID Run BLAST on NCBI transcript from alignment at scaffold_243:663608..665942 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054700 ID=TCONS_00054700|Name=TCONS_00054700|organism=Clytia hemisphaerica|type=transcript|length=2335bp|location=Sequence derived from alignment at scaffold_243:663608..665942 (Clytia hemisphaerica)
ATTTTTTCAAGTACTAGTACGTTGAAGCATTTtttctgcttcatttttca
tcagcttcttttgttattttcattgtAGTTTAAACAACAAAAGGAGAAAC
AATAAAGGAACAAGGGAAAGTAATCAAATAGGGAAATAAGCATCTTTAAA
AATCGAAGGACACATACTTTGTTCTATTTAGTTGGACATAAAAGCTCAGA
GGGAGAGGCAACCGCAGGACTTCTTTCATATCATCAATGTTCGTCTCGTG
CCAGTTAAAAGCAAGTCAATGAAATAGACATAATAAACTAAAAGGAGACA
CACATTACGTAATCCTTAAACAGATCCCTCTTCAGTCTTCACAGTCATAt
tttatttgaagaaaatatttggttattgataaagaaaaagagcTGTTTTA
GTTGtcttttagtttaatgtttattgaaaaatcaaaatgattgcGAACTG
CACATCAATATTCATTGAAGTTTACACCACACTGAAGAACTTTTCCCATA
TTGACATTCATCGTGCAGCTTTGGTATTATGTCGACATTTCAACGATATT
CGATTTGGTACAATCGATCAATCGGTCATAAACGATCTCCATCCTATCTG
TTGCGATCAGAGATCGTACCATGTTGGCTACCATCTTTGCCAGGATGTTC
TGCAACCAACCACCTATGAAATGCACCATATTTGTCCAAGTCTAGAAGAA
GAATCACCTCTAAAACAATACGAACTTCTCACTTACGTTCTATTAGGAAT
TCTACTACCACTTGGACTATTAGGTAACTTCACTGTCCTTTATGCTATTC
TTAAattacaatgtcttccacgACAAACTGGCAATTTCCTGACGAGTCTA
GCATTTGCAGACCTTGGAGTTATGCTACAATATGTTTTCTGGTTTATTTG
TATTCAAGCTCGAATCTCATTGTCAAAGACAGTGGATTTGTATTTCCACC
CATCTACAGATATGTTCTTCTCAGCTCTGGTTCTTCTCCAAATCACAGCT
ATCAGTATTGAACGTGCAGTAGCTGTCACCAGGCCACTGAAATACCCATC
GCTGGTATCACCAAAGAGATCTAAACTTATTGTTTACATCATCTGGTCAG
TTGGATTATTCTTCTTCCTATTCTCGATGTCACGAATCTTCATACCAGCT
CATTCATACACAAATTGTGTATTTGTCGTTGCAGCTATCGTCCTCTTGGT
ATTCCCTATCTCCACCATCGTTGTCTGCTACAGTATGGTCTTAGTATGTG
CATACAAGAATCTATCAGAGGATAGAAAACGTTTACGAATGCTGGCTGTG
TTCTTGAAAAGGACTTATGATAACAATGGACAAGATAACGATTCATCAAG
TGATTCTTCATCTTATGATGACAATCTTAAATATCGCCACAATAATATCA
GATGTCGTGAAATACGTCTAGCCATCAATGTTGCAATGGTTGTGTTACCT
TTCTTAGGTTGTTGGGGTTTCTTCCTCTTTATCAATGTTTACGAAGTGTT
AAACGACTACTACTTCCTTGGTATCATCAACTGGTTGATGTCTATATTAC
CGTTTATGGTGTCATGTCTGAATCCGATCCTGTATCTTGTCTTCACACGT
TCACTAAGGAAAGCTGTTAAGTCATTGATCAAACGTAAAATGAAAGCTAA
ATTAAGTAGAACTGAAGTCAGTATCATGACTGTTGGATCTAATAACATTA
TCTTTGGTAACAACAATAATGGATCAGCCAGTCGTAAAGTTTCAACCGTA
ATCGGTCGCAAATTAATGAGAGACCAATCAAGAGAAATGGAAACACTCCA
AGAACAACTTTTGactttagaaaaagaaaaggaacaAGTATGTACGACAA
GCATAGACTGATGTGTTTGAGCCTTTGAGTTGGTAGAGAGTTTTTATAAC
CCCTGGAGTCAATCCTTGTTCTTGTGGTCatcattttttgtttgaaacaa
AACATGAATGATGACCACAAGATCCCAGTGACTTTATGATTTTTATAATT
CTATAAAATAGTGTCCATTTCATCTTATAATCATATAACCGAAAAACCAT
GTAAATTTATTTTCTTTTATAATATACACGACTTACTGCACATTGAAAAT
GGGAAAACTTGATTCTTCCTTTAAGCGCCATTTGGACCAGGATGATTTTT
TTCATCGCCCTACTTTTTAGGCTGGGGATAAGAGCCGCAAAGACGCGGAT
GAATATTTCCTCTGCAATGGGAAAACTAGCGAGTACCTCACTAAAAACCG
GGATCTTTCATCTCGTTTCTTAGTGAGTTCCACTTTGACGATTTTCGAGA
AATAGAAGCCTTTCAAGTGCTTTGACGCAAATTCG Coding sequence (CDS) from alignment at scaffold_243:663608..665942 >TCONS_00054700 ID=TCONS_00054700|Name=TCONS_00054700|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_243:663608..665942 (Clytia hemisphaerica)
atgattgcGAACTGCACATCAATATTCATTGAAGTTTACACCACACTGAA
GAACTTTTCCCATATTGACATTCATCGTGCAGCTTTGGTATTATGTCGAC
ATTTCAACGATATTCGATTTGGTACAATCGATCAATCGGTCATAAACGAT
CTCCATCCTATCTGTTGCGATCAGAGATCGTACCATGTTGGCTACCATCT
TTGCCAGGATGTTCTGCAACCAACCACCTATGAAATGCACCATATTTGTC
CAAGTCTAGAAGAAGAATCACCTCTAAAACAATACGAACTTCTCACTTAC
GTTCTATTAGGAATTCTACTACCACTTGGACTATTAGGTAACTTCACTGT
CCTTTATGCTATTCTTAAattacaatgtcttccacgACAAACTGGCAATT
TCCTGACGAGTCTAGCATTTGCAGACCTTGGAGTTATGCTACAATATGTT
TTCTGGTTTATTTGTATTCAAGCTCGAATCTCATTGTCAAAGACAGTGGA
TTTGTATTTCCACCCATCTACAGATATGTTCTTCTCAGCTCTGGTTCTTC
TCCAAATCACAGCTATCAGTATTGAACGTGCAGTAGCTGTCACCAGGCCA
CTGAAATACCCATCGCTGGTATCACCAAAGAGATCTAAACTTATTGTTTA
CATCATCTGGTCAGTTGGATTATTCTTCTTCCTATTCTCGATGTCACGAA
TCTTCATACCAGCTCATTCATACACAAATTGTGTATTTGTCGTTGCAGCT
ATCGTCCTCTTGGTATTCCCTATCTCCACCATCGTTGTCTGCTACAGTAT
GGTCTTAGTATGTGCATACAAGAATCTATCAGAGGATAGAAAACGTTTAC
GAATGCTGGCTGTGTTCTTGAAAAGGACTTATGATAACAATGGACAAGAT
AACGATTCATCAAGTGATTCTTCATCTTATGATGACAATCTTAAATATCG
CCACAATAATATCAGATGTCGTGAAATACGTCTAGCCATCAATGTTGCAA
TGGTTGTGTTACCTTTCTTAGGTTGTTGGGGTTTCTTCCTCTTTATCAAT
GTTTACGAAGTGTTAAACGACTACTACTTCCTTGGTATCATCAACTGGTT
GATGTCTATATTACCGTTTATGGTGTCATGTCTGAATCCGATCCTGTATC
TTGTCTTCACACGTTCACTAAGGAAAGCTGTTAAGTCATTGATCAAACGT
AAAATGAAAGCTAAATTAAGTAGAACTGAAGTCAGTATCATGACTGTTGG
ATCTAATAACATTATCTTTGGTAACAACAATAATGGATCAGCCAGTCGTA
AAGTTTCAACCGTAATCGGTCGCAAATTAATGAGAGACCAATCAAGAGAA
ATGGAAACACTCCAAGAACAACTTTTGactttagaaaaagaaaaggaaca
AGTATGTACGACAAGCATAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054700-exon-scaffold_243-1491911889:663608..665942 | TCONS_00054700-exon-scaffold_243-1491911889:663608..665942 | Clytia hemisphaerica | exon |
| TCONS_00054700-exon-scaffold_243-1510915933:663608..665942 | TCONS_00054700-exon-scaffold_243-1510915933:663608..665942 | Clytia hemisphaerica | exon |
| TCONS_00054700-exon-scaffold_243-1575043694:663608..665942 | TCONS_00054700-exon-scaffold_243-1575043694:663608..665942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:663608..665942 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
