TCONS_00054676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054676
Unique NameTCONS_00054676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054676 ID=TCONS_00054676|Name=TCONS_00054676|organism=Clytia hemisphaerica|type=transcript|length=740bp
aCCTCTTTTGACGTTGAAAGAATCGGTAACTTGTTTCAAAATGTCATTTG
TTACGTTTGTCATCAAAGTCTTGTGAAAGTTCATCAAAGTGTTCAAATCA
ATTTGTAATGTATTGTTTCTTAAGTTATGAAAATCATTCATTTTAGCATA
GTTTAGCTCGATCAGCAGCTTTTTAATATCGTCCATCGTGTCATTAAATT
TCTGTTGCTGTTTAAACTCTTCCGGGTTGCCGTGTTTAATACCGTTTCTA
GACTTCTGAGCATCCTTGATAATTGCTTTGGAAGAATTTGGTAGAAAAAG
AAATTCCCCAGCAACACGAGCTATGATAGTCACGTCCCAATTTTTAGACT
CCGTTAAACAATTTTGTGGTAAGAGTAAATCGTATTGATCTTGATAAATA
GAGTTTTGTTTCAACAAAGAGTCTAGCTTCCTTTTCCTCTTAGGCTCggt
gaaaaaattgaacaggtcGACACCATCAGCAggcaaagaaactttaacaa
atgatgTATCACGGCAACTTTCCAGTAATGCTTCTTTTACATGAATGTCA
ATACTTAGAGTGGCAATCAAATAATTGCAATTGTCAACAACAACTGTTGA
GTTTGAATtacccattttgatttttcacttCAAATATTTCGTTTATACTA
AATTAGGTGAAAGAAACATTATTAGCCTACTTAtttataattttgaattt
taggccattaacacatttataatagGAGTAATTTACAAGA
Run BLAST on NCBI

protein sequence of TCONS_00054676-protein

>TCONS_00054676-protein ID=TCONS_00054676-protein|Name=TCONS_00054676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MGNSNSTVVVDNCNYLIATLSIDIHVKEALLESCRDTSFVKVSLPADGVD
LFNFFTEPKRKRKLDSLLKQNSIYQDQYDLLLPQNCLTESKNWDVTIIAR
VAGEFLFLPNSSKAIIKDAQKSRNGIKHGNPEEFKQQQKFNDTMDDIKKL
LIELNYAKMNDFHNLRNNTLQIDLNTLMNFHKTLMTNVTNDILKQVTDSF
NVKRG
Run BLAST on NCBI

transcript from alignment at scaffold_243:155996..156735

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054676 ID=TCONS_00054676|Name=TCONS_00054676|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_243:155996..156735 (Clytia hemisphaerica)
TCTTGTAAATTACTCctattataaatgtgttaatggcctaaaattcaaaa
ttataaaTAAGTAGGCTAATAATGTTTCTTTCACCTAATTTAGTATAAAC
GAAATATTTGaagtgaaaaatcaaaatgggtaATTCAAACTCAACAGTTG
TTGTTGACAATTGCAATTATTTGATTGCCACTCTAAGTATTGACATTCAT
GTAAAAGAAGCATTACTGGAAAGTTGCCGTGATAcatcatttgttaaagt
ttctttgccTGCTGATGGTGTCgacctgttcaattttttcaccGAGCCTA
AGAGGAAAAGGAAGCTAGACTCTTTGTTGAAACAAAACTCTATTTATCAA
GATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGAGTCTAAAAA
TTGGGACGTGACTATCATAGCTCGTGTTGCTGGGGAATTTCTTTTTCTAC
CAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAACGGT
ATTAAACACGGCAACCCGGAAGAGTTTAAACAGCAACAGAAATTTAATGA
CACGATGGACGATATTAAAAAGCTGCTGATCGAGCTAAACTATGCTAAAA
TGAATGATTTTCATAACTTAAGAAACAATACATTACAAATTGATTTGAAC
ACTTTGATGAACTTTCACAAGACTTTGATGACAAACGTAACAAATGACAT
TTTGAAACAAGTTACCGATTCTTTCAACGTCAAAAGAGGt

Coding sequence (CDS) from alignment at scaffold_243:155996..156735

>TCONS_00054676 ID=TCONS_00054676|Name=TCONS_00054676|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_243:155996..156735 (Clytia hemisphaerica)
atgggtaATTCAAACTCAACAGTTGTTGTTGACAATTGCAATTATTTGAT
TGCCACTCTAAGTATTGACATTCATGTAAAAGAAGCATTACTGGAAAGTT
GCCGTGATAcatcatttgttaaagtttctttgccTGCTGATGGTGTCgac
ctgttcaattttttcaccGAGCCTAAGAGGAAAAGGAAGCTAGACTCTTT
GTTGAAACAAAACTCTATTTATCAAGATCAATACGATTTACTCTTACCAC
AAAATTGTTTAACGGAGTCTAAAAATTGGGACGTGACTATCATAGCTCGT
GTTGCTGGGGAATTTCTTTTTCTACCAAATTCTTCCAAAGCAATTATCAA
GGATGCTCAGAAGTCTAGAAACGGTATTAAACACGGCAACCCGGAAGAGT
TTAAACAGCAACAGAAATTTAATGACACGATGGACGATATTAAAAAGCTG
CTGATCGAGCTAAACTATGCTAAAATGAATGATTTTCATAACTTAAGAAA
CAATACATTACAAATTGATTTGAACACTTTGATGAACTTTCACAAGACTT
TGATGACAAACGTAACAAATGACATTTTGAAACAAGTTACCGATTCTTTC
AACGTCAAAAGAGGt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034437XLOC_034437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054676-exon-scaffold_243-1491911889:155996..156735TCONS_00054676-exon-scaffold_243-1491911889:155996..156735Clytia hemisphaericaexon
TCONS_00054676-exon-scaffold_243-1510915933:155996..156735TCONS_00054676-exon-scaffold_243-1510915933:155996..156735Clytia hemisphaericaexon
TCONS_00054676-exon-scaffold_243-1575043694:155996..156735TCONS_00054676-exon-scaffold_243-1575043694:155996..156735Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054676-proteinTCONS_00054676-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:155996..156735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0627493	0.157781	0	0	0.153047	1.25879	0.615945	0.791451	1.21875	1.49512	0.823136	7.37874	6.84898	11.5631	12.6572	7.00992	7.4598	5.34644	5.45044	4.98367	4.82375	2.64004	4.00227	6.75262	5.61678	22.9843	14.4474	15.7348	15.0637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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