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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054673 ID=TCONS_00054673|Name=TCONS_00054673|organism=Clytia hemisphaerica|type=transcript|length=1790bp
gtttcttttttattagaacccagtttataagaacattgaggctgaaattt
gtcgaaaaattaagaacatgcccagcctcaggttggaaaaaatgacaaga
aactacaattttttctcttttcaagcagttttaaatGAACTTAAGGatag
attttctaaaatcgagagtcaaatattgtccaaattttaccaattttaag
tgctttttattttgcatgataaagtcgatttagagtagtctgaaaaatta
agaacgcatctaagaacatttcaggctgaaaattgctaaaaaaataagca
catccaggctcagccaaattttaggtgttctaataaaaaaaaacgtgtaa
tgatCTGCTCTACTGTCAGGTGGTCGGGGTGGTCATCGAATAAACAAACG
AGATGATTAGagaatcttcaaattttaaataaacGGGCGGGGACCTAGTT
ATCGGGGAAGGGGAGGTTGGAAACTGTTCTTCTAAATGTTCCCAAAATAA
GTTAACTATACCATTAGAGTGAAAAACTATTTAGAGAAAATAactcttct
tttcaaaaattaatgaatttAATAAggtcaaaaaaattaagaacgcattt
aagaacatttcaggctgaaaattgctaaaaaaataagcacatccaggctc
agccaaattttaggtgttctaataaaaaaaaaaacgtgtattcaatttga
aaaaattacgtgttgctaaaataaaaataaaatctcgTCAAGAAATTTCG
TTAAAATGCCCATTGTACCTGCAAAATAGGAAAGAGCTATGATAGGCTAA
AACCTGCTGGATGTCACAAAAGAACCGAGTAATATCGGACTAAATAAAAT
ACGGAATGACCCGTCACAACATCATACAAACAAACCCAAAAACGAATTAT
GTCACTGTTTTTTTAGAATGTACCCGAATGACTTTTCAGAGATCTTTAAA
ACCATCTTTTTCGCGATATCTTCTTCcattttaggaatttttggaCCTTA
TTTTCAGAAGTGACTTATATTTTTACACGGGGATTCCAATGATATAGGTT
TCGGAGTTATTTGGGATGAAATATTCcagaaaatcaagattttctaattt
ttactaTAGCAATTTTATAAAACGGCTTTATTATCCAAACCCTTCGGAAA
CCTAGTGTTCATAACATAAACTTTCAAATTTAAGGAGTAGAAAAGGATGA
AGAATTCCACAATTTTGGATTTCGGGTGACATAGAAAGTGGAATATTTCA
TCCTATGTCACTCTTTTGGTGAATGTATTGCTATATTCTGAAAGATGCAC
TTTTTACTATTACACTCATTTTCTACTCCTTTCACCGTTTCGTTTACGTT
TTCTAATAATTTATATAGTACACCATTTGAGAGTATAATTTCAAAACGGA
AATTTATATAGATAAGGAATAATCAACTGTTGAATTTTTCATCCATCCGA
ACAGAAGAAAGCTCCTATCTTAGATTACTCCTTATTTTGTAGCTGTTCAA
CTCATCCAATTAAAGCCAGACTAAAAAATCGGAATATTTCAtcatatctc
tttttctcaaaataaattgaaatactaatgtaaaagttttcattataaaa
atttgttttgaacaGGAGATACCCAAAAAAAGACAGTTTGGTACATTCTA
TTATGCGTTTTTTTTTCACTATGCAGTATATTACGAGGTAATATGTTTTA
TAAAGCTATTACGTAAAAGTTATATATCATACTATGATATGAGTTCTGTT
CTAGAACATACCCTGGGTTTTTATAAACAACTTCGTCGAC Run BLAST on NCBI transcript from alignment at scaffold_243:116596..118385 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054673 ID=TCONS_00054673|Name=TCONS_00054673|organism=Clytia hemisphaerica|type=transcript|length=1790bp|location=Sequence derived from alignment at scaffold_243:116596..118385 (Clytia hemisphaerica)
GTCGACGAAGTTGTTTATAAAAACCCAGGGTATGTTCTAGAACAGAACTC
ATATCATAGTATGATATATAACTTTTACGTAATAGCTTTATAAAACATAT
TACCTCGTAATATACTGCATAGTGAAAAAAAAACGCATAATAGAATGTAC
CAAACTGTCTTTTTTTGGGTATCTCCtgttcaaaacaaatttttataatg
aaaacttttacattagtatttcaatttattttgagaaaaagagatatgaT
GAAATATTCCGATTTTTTAGTCTGGCTTTAATTGGATGAGTTGAACAGCT
ACAAAATAAGGAGTAATCTAAGATAGGAGCTTTCTTCTGTTCGGATGGAT
GAAAAATTCAACAGTTGATTATTCCTTATCTATATAAATTTCCGTTTTGA
AATTATACTCTCAAATGGTGTACTATATAAATTATTAGAAAACGTAAACG
AAACGGTGAAAGGAGTAGAAAATGAGTGTAATAGTAAAAAGTGCATCTTT
CAGAATATAGCAATACATTCACCAAAAGAGTGACATAGGATGAAATATTC
CACTTTCTATGTCACCCGAAATCCAAAATTGTGGAATTCTTCATCCTTTT
CTACTCCTTAAATTTGAAAGTTTATGTTATGAACACTAGGTTTCCGAAGG
GTTTGGATAATAAAGCCGTTTTATAAAATTGCTAtagtaaaaattagaaa
atcttgattttctgGAATATTTCATCCCAAATAACTCCGAAACCTATATC
ATTGGAATCCCCGTGTAAAAATATAAGTCACTTCTGAAAATAAGGtccaa
aaattcctaaaatgGAAGAAGATATCGCGAAAAAGATGGTTTTAAAGATC
TCTGAAAAGTCATTCGGGTACATTCTAAAAAAACAGTGACATAATTCGTT
TTTGGGTTTGTTTGTATGATGTTGTGACGGGTCATTCCGTATTTTATTTA
GTCCGATATTACTCGGTTCTTTTGTGACATCCAGCAGGTTTTAGCCTATC
ATAGCTCTTTCCTATTTTGCAGGTACAATGGGCATTTTAACGAAATTTCT
TGAcgagattttatttttattttagcaacacgtaattttttcaaattgaa
tacacgtttttttttttattagaacacctaaaatttggctgagcctggat
gtgcttatttttttagcaattttcagcctgaaatgttcttaaatgcgttc
ttaatttttttgaccTTATTaaattcattaatttttgaaaagaagagtTA
TTTTCTCTAAATAGTTTTTCACTCTAATGGTATAGTTAACTTATTTTGGG
AACATTTAGAAGAACAGTTTCCAACCTCCCCTTCCCCGATAACTAGGTCC
CCGCCCgtttatttaaaatttgaagattctCTAATCATCTCGTTTGTTTA
TTCGATGACCACCCCGACCACCTGACAGTAGAGCAGatcattacacgttt
ttttttattagaacacctaaaatttggctgagcctggatgtgcttatttt
tttagcaattttcagcctgaaatgttcttagatgcgttcttaatttttca
gactactctaaatcgactttatcatgcaaaataaaaagcacttaaaattg
gtaaaatttggacaatatttgactctcgattttagaaaatctatCCTTAA
GTTCatttaaaactgcttgaaaagagaaaaaattgtagtttcttgtcatt
ttttccaacctgaggctgggcatgttcttaatttttcgacaaatttcagc
ctcaatgttcttataaactgggttctaataaaaaagaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054673-exon-scaffold_243-1491911889:116596..118385 | TCONS_00054673-exon-scaffold_243-1491911889:116596..118385 | Clytia hemisphaerica | exon |
| TCONS_00054673-exon-scaffold_243-1510915933:116596..118385 | TCONS_00054673-exon-scaffold_243-1510915933:116596..118385 | Clytia hemisphaerica | exon |
| TCONS_00054673-exon-scaffold_243-1575043694:116596..118385 | TCONS_00054673-exon-scaffold_243-1575043694:116596..118385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:116596..118385 . |
Blast
The following BLAST results are available for this feature:
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