TCONS_00054672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054672
Unique NameTCONS_00054672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054672 ID=TCONS_00054672|Name=TCONS_00054672|organism=Clytia hemisphaerica|type=transcript|length=631bp
ataaaattgtaACAACCTGTCAGTTTTTCAAGCTTCCGTCCGAAGATTTT
TCTAATTCTGCCATATCTAATTTATTGTTATCAAACCATTTAGCTTGGTC
AATTTTCTACACTATTTGAGTAGTAAAACCTTCCTAAACCTTTTTTCATT
GTCATTTTCGTTAGTTAAAAGCTGGCAAGCTTATGATTGAGATATTACAA
AATTTTTGAGTATGAAGACTTCTGAGTAGTCCAAATTTGTTTGCTACGTG
CGTTACATTTTGATCAGATTTTGTACTTGAAAGTAATCTTCTCGTTATAA
AATATATGTTGATTTGGTAAGTGAAGGGTCCTAGATAGGATATAATGAAT
CAGATGcctttaaaaagacaaaatagtGATATTTATGTAACAATATTTAT
AAAGTTCCAAATCTTTTCATATGTTAcagttttatcaaatttttgggaTT
TAACTATGTTTCTTATGTCTTAAATCCTAGTTTTAGGTTCAGTTGGAAGT
TTGAAGTAACAGTTCACAAAATATCATTCAATAAGAAACAATTATACATT
GTATAAATTCACTTGATGATAAACCTATCTAATTTAGCCTAAAATTCAGC
ATCTTCACGGTGATAtgttttttgttacatt
Run BLAST on NCBI

transcript from alignment at scaffold_243:42281..42911

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054672 ID=TCONS_00054672|Name=TCONS_00054672|organism=Clytia hemisphaerica|type=transcript|length=631bp|location=Sequence derived from alignment at scaffold_243:42281..42911 (Clytia hemisphaerica)
aatgtaacaaaaaacaTATCACCGTGAAGATGCTGAATTTTAGGCTAAAT
TAGATAGGTTTATCATCAAGTGAATTTATACAATGTATAATTGTTTCTTA
TTGAATGATATTTTGTGAACTGTTACTTCAAACTTCCAACTGAACCTAAA
ACTAGGATTTAAGACATAAGAAACATAGTTAAAtcccaaaaatttgataa
aactgTAACATATGAAAAGATTTGGAACTTTATAAATATTGTTACATAAA
TATCactattttgtctttttaaaggCATCTGATTCATTATATCCTATCTA
GGACCCTTCACTTACCAAATCAACATATATTTTATAACGAGAAGATTACT
TTCAAGTACAAAATCTGATCAAAATGTAACGCACGTAGCAAACAAATTTG
GACTACTCAGAAGTCTTCATACTCAAAAATTTTGTAATATCTCAATCATA
AGCTTGCCAGCTTTTAACTAACGAAAATGACAATGAAAAAAGGTTTAGGA
AGGTTTTACTACTCAAATAGTGTAGAAAATTGACCAAGCTAAATGGTTTG
ATAACAATAAATTAGATATGGCAGAATTAGAAAAATCTTCGGACGGAAGC
TTGAAAAACTGACAGGTTGTtacaattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034433XLOC_034433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054672-exon-scaffold_243-1491911889:42281..42911TCONS_00054672-exon-scaffold_243-1491911889:42281..42911Clytia hemisphaericaexon
TCONS_00054672-exon-scaffold_243-1510915933:42281..42911TCONS_00054672-exon-scaffold_243-1510915933:42281..42911Clytia hemisphaericaexon
TCONS_00054672-exon-scaffold_243-1575043694:42281..42911TCONS_00054672-exon-scaffold_243-1575043694:42281..42911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:42281..42911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40735	0.839011	0.910572	2.52934	0.113374	0.179179	0.324258	0.101189	0	0	0	0.223962	0.167738	0.464527	0.143214	0.153691	0	0	0.610265	0	0.568989	0.47577	0	0.0876357	0	0.0805574	0.691664	0.123027	0.279935	0.28521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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