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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054655 ID=TCONS_00054655|Name=TCONS_00054655|organism=Clytia hemisphaerica|type=transcript|length=965bp
TTATCCCCGTCATGAATCCCGATGCTTGCGTTGCGGTAGacatcaaaaga
aaattaagaaaaaacgGCACGCGAAAGGTCTCTGCTCCTCTTTGAAAGTT
GTGTATAAAAGGAGGGGGAGGGAACACAAATCATTTAGCAACTCGAAGAG
TGAAGAAGAACTTGAAGAAGCAAAGAAGAAGTAGAAGATGAATACAATCT
GTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAAGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGCACACGCCAAAAGAAATAATGTCAAACGAGAGTGCGA
CTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGATTACT
GCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGA
CCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGTTATGGC
CGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAAAAGAGAA
ACTCAAAGTAGAGGAGAAAAGAAGATGTTCAACCCAGCAAAAAATCGATC
ACAATCAAACTAGAACGAGAAAACTGACATCCGATTAATCCCATTCCACT
CAAATAACAACAATAATCAATCGATGCTTTTAGCTAGTATACTTAATttc
atttaaagatttttgtaatTAATTCAGTGATATACATCATAAACTTTAGA
CTTTTTTAGAACGAAAAGATTTGTATTTTTTCCAAGTTAATATAAATATA
ACCACTCGAAATGAACATATAATAATAGCTATTCGTGAAGTTATCAATTA
GTGTGGAATTAgcag Run BLAST on NCBI transcript from alignment at scaffold_243:627561..631547- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054655 ID=TCONS_00054655|Name=TCONS_00054655|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at scaffold_243:627561..631547- (Clytia hemisphaerica)
TTATCCCCGTCATGAATCCCGATGCTTGCGTTGCGGTAGACATCAAAAGA
AAATTAAGAAAAAACGGCACGCGAAAGGTCTCTGCTCCTCTTTGAAAGTT
GTGTATAAAAGGAGGGGGAGGGAACACAAATCATTTAGCAACTCGAAGAG
TGAAGAAGAACTTGAAGAAGCAAAGAAGAAGTAGAAGATGAATACAATCT
GTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAAGT
AAGTATTCAATGATTTTATCTGTAATGTGTATAAGGCATTTGGACCCAAT
TCGCAAAAGGAATTTTATCTTTGTAATGAAATTCATGTAGTAGCGTTGTG
AGAAAAAAAGTCATGATCAATCATGAGCCATAACGTGCTGCGGGCATATT
CAGATCTTTATTTTTCGATATTTCTTGAACCACTTTGTGATTCTATTAAT
TTCACTGAATTCAATGAAAAGAAAGGCAAGCGGATTTACTGATACTGACA
CTGCGTTAGTATCGGAATATGAATCGATGTATTCTCGTTTCTTCTTTGCA
GGATGCGAAGACAAATACCCTGAGAAATGTTACCAACAAGTTGTCGTTGG
TATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATTTCTATTGGAATG
TTTGCCCTAAATCGTGTGGAGCATGTGGTAAGGAACCATAGAAAAATTCT
AATGTAACTTTTTATGAGTATTTGGGTGTAATATTCTAAGATATTATATG
TTAAATACGAGCTCCCAAAAAGCTCTATGTCACCAAAATTTTGGGATTAG
TTCGGCAGCAGCGCCATCGTTATAACTTTACTGAGTTCTATACGTCCAAA
TAAATGTGCAAGTCTTTTGGGAAATTCTATTTGGCAATTTTATCATGATC
ATACCTTTAATGTACATTTTCATAGAACAAGAAATGCGTGACTTGTTTGC
CCAAATTTTCAGGTCCCTCCAAAAGAGAAAACACGAAACGTTCATGCGAC
TGCGATAATGTCACTCCTGATTGCGAAGACTATTGTCTTATGGAACAATT
CTGTGATTCCGCATGTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTC
CAGATCATCCAATTGGCAAAAGAGAAGGTAAAACCATGTTAATAGACATT
TTCATTATTTACGTCACGAGCAACGCTTACCTCGTTTTCAAAATATTGCT
GTGGTAATTTTATTCCCTGGGGAGTTCGCTATTTTAAAAGTAAGAAATGA
AGCATCAAGGGATTTAATCACCTTGGTAACGGTTTCAAAACGAAGCAGTC
GTCGCACTAAAAATAATTTATGAAAAGGCCAATTCCTTTTTCAATTATAC
AGTATGCCCGGAAAAAAAGTGAAACAGATAGTAGTTAAATCTCCAAAAAT
CTATTATCAAATACACTCTTACAAACCTACTGGGAACCCTTATATATCGT
CCCCGGTGGAAAATTATCCTCCAAATTTTGTCCCCCCCCCTGAAAATAAT
CAAATAAACCAATCCTCACTGCAAAATATTCACTATTTTTTCCATCCCCA
ATGAACTTTCTGACTTTAAAACAAAGAATTTAAATCCCCTTTCATAAAAC
ATATATGAATATCAATCCCCATCGAGTTTCAGTCGGTTAATTTTATCCCC
ACTGGCTGAAAAAGTCCTAACGGGTCTGTGAGAAGGGGTGTTCAAATTGG
AGTTTAGACAATCAAACTAATGGAATTTCACTGTTGAATCGTTTAGGTAT
CCAAAAGATATAATTAAAATTGTTTTTTTTAAACTTGTGTATAATTAGGT
ATAAAAGATCTGTTCTGTTTTTTTCTCTTTTTTTGTCTTTGATTTTCTGA
GATATTGAATATTAAGTCAGCACACTGGTTCATTGTGAGAATCTTGTTCA
TTTGCGATGAAATTTCAACCTACTATTTGGAAAAGACCTACATTCTACTC
TAGGCCACCTAAAGTCATGTGATTGATGCACTTATAATGTTGAGGGGGAA
CACACAAAGAATAAAACTTTAATAGTAAAGGAGGGAAATTGTCCAAAAAA
ATCTGTTTTGCACCTTTGTATAAGGTAAGACTATGCTAACAATAAAAACT
TTCTAATTTCCAGCACACGCCAAAAGAAATAATGTCAAACGAGAGTGCGA
CTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGATTACT
GCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGA
CCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGTACATT
TTTATGATCATCTTTATGTATCAGTTTTTGCGGGAATTAAATTTGGTGGG
TTTAGCAGTTTTCAGCCAAAATTTTCATCATTTTTTAGTTCTTAAAACGT
AAAATCAGCATTTTCAGGTCAAATACCAAGTAGTCTTCGCATCACCAAAT
TAAATTCCCATCAAAAAATTCTTTTCGGCCAACCAAAAATTAAGGGAACG
CCGAAACACTTAAGGTGTATTTAGAACCTTTTATTCAGTACATCGAAACC
AAAGTAGCTAATCTTGGTAAATATGGACGACATCTTGCGGAACCTTTTTC
TTGTTTCTCTATCAATTATTATTAATTATTAATTATTTATTATTAAGATT
TTTCTCTAGTTTCCATTGGCTATCACACTGTAGTCGAACTTATGTTATTT
TAAGTTTATTCTTGCATAACGAGCATGAATGTCGTTCCTCTACAGCTTTT
CAAATTAGTAGAAACCGAAACTAGAATACCGTAGCGGGACCGTAGCTCTA
GATCGAACATACCTTATCGGGGAAAAAATGTTGGGGGAAAGTGACGAAAA
TTTTGAGGGAGTGACGAAATTTCCCCCCGACGAATTTTTTCCCCGATATT
TTATCACCCGATCAAAACTTTTACCCGGTTTTCCAATCCCGACCAAGATC
TTCCCCGATTTTTTTATTTCAACAGAAAAAAGGATTTCTATCGTAGTTTT
CCATTTTAAACGTTCCATGGATGTTTCTTAACAAAACAAATAAAATGACT
TTCTTTTCAAACGAGTTCTTTTGCCTAAACAACAAGCTTATAGTTAAAAC
TACAATGGTTTGATAAAAAATAACAATAGTAACACAATGTCGGTCGTTGG
TCAAGTCTTTAAAAAATCCAAATATTAACAAAGTTTTTATTTAAAAGATG
TCCCTCATTTCTGGGCATTTTTGACAGCGAGAAAAGGTAGTAGTTTGTAG
CAGTAATTTAATGTTGTGATAAAACTATTGAAACAAATGAGCATTACTAA
AAATCTTGATAATTCCTTTTTATGCTCTATATTTTATCGGAAACATTTAA
AAAATTTGGTCGGGGAAAAGTGACGAATTTGAAATTTTGGTCGGGGGAAA
GTGACGAAAATTCCTCTAGGTGACGAAATTTTTCACCAACGAAAAAAAAC
CCGACTATTAAATAAAAGTCCGACATTTTTCCCCAATTAGGTATACTCTG
GTCTATAGCGCATATGATTTACACGAAAACACGAGTAGAACTCTTTTTTA
CGTACGCGGTGGTTTCGGTCTATCTTACAATTTTCATTTAATGAAAATCT
TTCGTTTTATTAAAGTTATGGCCGGAAAATACCGACGCACCATGATGGCA
AGGATTATGAAGGAAAAGAGAAACTCAAAGTAGAGGAGAAAAGAAGATGT
TCAACCCAGCAAAAAATCGATCACAATCAAACTAGAACGAGAAAACTGAC
ATCCGATTAATCCCATTCCACTCAAATAACAACAATAATCAATCGATGCT
TTTAGCTAGTATACTTAATTTCATTTAAAGATTTTTGTAATTAATTCAGT
GATATACATCATAAACTTTAGACTTTTTTAGAACGAAAAGATTTGTATTT
TTTCCAAGTTAATATAAATATAACCACTCGAAATGAACATATAATAATAG
CTATTCGTGAAGTTATCAATTAGTGTGGAATTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054655-exon-scaffold_243-1575043694:631300..631547 | TCONS_00054655-exon-scaffold_243-1575043694:631300..631547 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1575043694:630421..630585 | TCONS_00054655-exon-scaffold_243-1575043694:630421..630585 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1575043694:629255..629434 | TCONS_00054655-exon-scaffold_243-1575043694:629255..629434 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1575043694:627561..627932 | TCONS_00054655-exon-scaffold_243-1575043694:627561..627932 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1510915933:631300..631547 | TCONS_00054655-exon-scaffold_243-1510915933:631300..631547 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1510915933:630421..630585 | TCONS_00054655-exon-scaffold_243-1510915933:630421..630585 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1510915933:629255..629434 | TCONS_00054655-exon-scaffold_243-1510915933:629255..629434 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1510915933:627561..627932 | TCONS_00054655-exon-scaffold_243-1510915933:627561..627932 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1491911889:631300..631547 | TCONS_00054655-exon-scaffold_243-1491911889:631300..631547 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1491911889:630421..630585 | TCONS_00054655-exon-scaffold_243-1491911889:630421..630585 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1491911889:629255..629434 | TCONS_00054655-exon-scaffold_243-1491911889:629255..629434 | Clytia hemisphaerica | exon |
| TCONS_00054655-exon-scaffold_243-1491911889:627561..627932 | TCONS_00054655-exon-scaffold_243-1491911889:627561..627932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:627561..631547 - |
Blast
The following BLAST results are available for this feature:
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