TCONS_00054652 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054652
Unique Name	TCONS_00054652
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2983

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_243:594803..597785-

transcript sequence

>TCONS_00054652 ID=TCONS_00054652|Name=TCONS_00054652|organism=Clytia hemisphaerica|type=transcript|length=2983bp
AAACGTGATCCGGTAACTGTTATCTCTTTCACTTGTATATGGTTGTTTGT
ATTATTGATGACATTCATTTCTTTCACACACAACAACTTGGATGTTGTTA
CAAATAAAATATCATCGTTTAAAAAAAAGGGGTAGAGAAATTTTGTATGA
GTGTTTATAATTAGTTGATGTTTATGTTGTTTTTCATATGTATGTGTTCT
GTTGTTTGTTATAGCAGTAAAATGCTCGTTTGTGTGAGATTGATTTTTAG
GTATGCTTTATGCAATTATCAAAACGAAGTAACAAAACGTGTCCCCGAAG
GGGCTAAAGATGAAACTCTTAGATGGAAAATGAGGCAATTCGAAACATGT
GGCCCGCGTGGTTTTCTTTTTACCAACTGAAAAAGTACCATGTCTACCAT
TATGGATTTGAGAGTGTTCCCATCTTCCTGGGTGTGGGGCTTTGttttgg
tgattcctgacatgttcctggacctctgtgcaaaatttcatctctacacc
atttttgtcccGGTTTTGGCGGTTTATGACCTAATTCTACCTGAATACTA
CCTCCTTACAACATTAACGATGTTGAGCAAGACATTGTTTAGATGTTGTG
TGCCGGtttctttgaaagtttttcgtATGAAAACGAGTAGTTTCTGGATA
TATTTCCAGGTATTTATTCACTTTAAACAAACTAGAAAACAAAATTGGTA
ATAATCTAAGAGAggctttcaaatgaaaatttctcTATATATTTTCAGGT
AGTAATTCAACATTATAAACAAACAAGAggaaaacaaataaacaaatata
aTATTCAATGAAGAAGAATGGTACAAGACAACATTATCAATCTCATCAAA
ACAACACTACATCCAATCCCTATTGTCTTTGGTGAGAAATACAACAAAAC
AGATAGTAGTAGTGGATTGAATAACAATCGTTTACTTGTTCCAACATCAG
GTATCACCAATGTCAGCTCAAATAATTATCCAGAAATACCTCTGGGTACA
GAGATTGGTATTTCCACAGCTGTCTTCGCCGGCCTTGGTATTCTCATTAA
TGCTTTGGTAATAACGGTTATAGTCATGGCCAAAACAAGACAATATTCTA
CATATAAACATCTAATGCTACATTTGGCAGCCTGTGATTTTCTATGTTCA
ATTATGTTATTGCCTTACGTGCCGTTAGAATTGAAAAGTCATTATTGGAC
CTATCCAGATGCAACATGTCAAATCATCTATCCAACAATATCTCTCCTGA
CCAATGTTTCGACAGGGACGATTTTGATTATAACCATTGAACGATTCAGA
GGCGTTTGGTTCCCACACGCCCGTCAATGGGGCGGAACAGACGTAAAGAA
AGCATTCGCCATTGTCTGGCTCATAAGTCTTGTATCCGTACTACCCAATA
TCATCATGTTACGTGTGAAACAATATGACAATATAATATATTGTAATGAG
GTTTGGGATGAAAACGATCCCACTTATAAGCGTTTGTATGGATTCTCATT
TTTGGctgtttcttttttcattccATTACTGGGAATTACTATCATGCACA
CCTTGATTATCTGTCGATTGAAATATAAAGAACTCACACCGGACAACATG
TCAGCTCACCAGCAACGACAGAACCAACGCATTATGAGAGTTCTAACTGG
TATTATAGCAGTCTTCTTCTGCACTGTCAGCCCAAACAAGATATTGTATT
TCGTCTGGGATGTGGACCCCCAGTTGGAAAAGGACTTGGAATCAAATACA
CGATATTATTTAAGGACAGTACAGTTTTTCTACTGGTCTCGAGTAGCTAT
CAACCCTATGATTTATTGCTTCTTTGATACACGTTtcaagaaagatttca
aaaagtcCACTAGAAGGATGCGTGGCTTGAGTATAAGAGACAGTGAAGTT
CGAAGCCGATCGGCTAGCCAACGCACTTCCACAATACTCTCCGTACGATC
AAGAGCGAACAGTAGCTTTATAGGCGAGGCGGAAGAAGCTATCTCTCGAT
GTAACCGTATGAGTAAGATCTCCGAAATGGATGCAACGTCTTTGCAAACG
TTCGTTGAAGACAGGGGACGTCGCGTACGTTCAGCCACGGTAGATACGGA
CCTAAGTGTCTCACCAATGGCCCACAGCACATTGGTAAAACAAGGATCTA
GATAAATCGAAATTTATTATTGTATATGAGGTTCtcgttttataagaact
ttaatATTTGTTAGGTGTATTATAAAATGCCGTACTTAGGTTAACAACTC
CTTCCGCCCTGTTCGAGTCTGACCAAGATTGGGGTATAATAGGGGAGTGG
CAAAATTTCGTCGAAAAGTGCTTAAGCTGAAAGTTTACGCCTCACGTTTT
TTATTACTTCACTCACTATAAAAAGGAGACATTTGGCTTCCACTTTTTTA
CAACTTGATGGCTTTTAAGTAcgttttttcctctttttgaacATTTATAT
TGCCAACTTCAACGACTTCAATTTAATTGACTCGATGAAACATGTTTTAG
CGATAATTGCTCCGACTGTCATGTAGTTTCCAATCCTTGttttaaatgta
tatttttCGGAAAGCAACAGAATCTAACGTTATACAGTTAACATTAGATT
ATActtgttgaaaaatgaaaaatttgcaaGTAACAATAGCTAATCAGATA
CAGATATGATATCTGTGGCCAAACCAAAGACCTAAATACTTGTACTGATC
GAATAAAATTCATGATGAAGCTTATTATCATATTATGTTATAAAGATTGT
ATCTAATATACATCATATCATTTTTCTTGCATTTATATAGAAACAAGTAT
TATTACAAATATATATTGtataaaatattataataatgattatttttaat
aGGTATTCTTTCATATGTATGATAGTCCCCTCCTTGTAAAATTCTTGTAG
CTTATTATACtcattatatttttaaaaagtcaTATACATTATAGTATCAA
AAAGAGAAAACTAAAGTTATACTCACAAAAACA

Run BLAST on NCBI

transcript from alignment at scaffold_243:594803..597785-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054652 ID=TCONS_00054652|Name=TCONS_00054652|organism=Clytia hemisphaerica|type=transcript|length=2983bp|location=Sequence derived from alignment at scaffold_243:594803..597785- (Clytia hemisphaerica)
AAACGTGATCCGGTAACTGTTATCTCTTTCACTTGTATATGGTTGTTTGT
ATTATTGATGACATTCATTTCTTTCACACACAACAACTTGGATGTTGTTA
CAAATAAAATATCATCGTTTAAAAAAAAGGGGTAGAGAAATTTTGTATGA
GTGTTTATAATTAGTTGATGTTTATGTTGTTTTTCATATGTATGTGTTCT
GTTGTTTGTTATAGCAGTAAAATGCTCGTTTGTGTGAGATTGATTTTTAG
GTATGCTTTATGCAATTATCAAAACGAAGTAACAAAACGTGTCCCCGAAG
GGGCTAAAGATGAAACTCTTAGATGGAAAATGAGGCAATTCGAAACATGT
GGCCCGCGTGGTTTTCTTTTTACCAACTGAAAAAGTACCATGTCTACCAT
TATGGATTTGAGAGTGTTCCCATCTTCCTGGGTGTGGGGCTTTGTTTTGG
TGATTCCTGACATGTTCCTGGACCTCTGTGCAAAATTTCATCTCTACACC
ATTTTTGTCCCGGTTTTGGCGGTTTATGACCTAATTCTACCTGAATACTA
CCTCCTTACAACATTAACGATGTTGAGCAAGACATTGTTTAGATGTTGTG
TGCCGGTTTCTTTGAAAGTTTTTCGTATGAAAACGAGTAGTTTCTGGATA
TATTTCCAGGTATTTATTCACTTTAAACAAACTAGAAAACAAAATTGGTA
ATAATCTAAGAGAGGCTTTCAAATGAAAATTTCTCTATATATTTTCAGGT
AGTAATTCAACATTATAAACAAACAAGAGGAAAACAAATAAACAAATATA
ATATTCAATGAAGAAGAATGGTACAAGACAACATTATCAATCTCATCAAA
ACAACACTACATCCAATCCCTATTGTCTTTGGTGAGAAATACAACAAAAC
AGATAGTAGTAGTGGATTGAATAACAATCGTTTACTTGTTCCAACATCAG
GTATCACCAATGTCAGCTCAAATAATTATCCAGAAATACCTCTGGGTACA
GAGATTGGTATTTCCACAGCTGTCTTCGCCGGCCTTGGTATTCTCATTAA
TGCTTTGGTAATAACGGTTATAGTCATGGCCAAAACAAGACAATATTCTA
CATATAAACATCTAATGCTACATTTGGCAGCCTGTGATTTTCTATGTTCA
ATTATGTTATTGCCTTACGTGCCGTTAGAATTGAAAAGTCATTATTGGAC
CTATCCAGATGCAACATGTCAAATCATCTATCCAACAATATCTCTCCTGA
CCAATGTTTCGACAGGGACGATTTTGATTATAACCATTGAACGATTCAGA
GGCGTTTGGTTCCCACACGCCCGTCAATGGGGCGGAACAGACGTAAAGAA
AGCATTCGCCATTGTCTGGCTCATAAGTCTTGTATCCGTACTACCCAATA
TCATCATGTTACGTGTGAAACAATATGACAATATAATATATTGTAATGAG
GTTTGGGATGAAAACGATCCCACTTATAAGCGTTTGTATGGATTCTCATT
TTTGGCTGTTTCTTTTTTCATTCCATTACTGGGAATTACTATCATGCACA
CCTTGATTATCTGTCGATTGAAATATAAAGAACTCACACCGGACAACATG
TCAGCTCACCAGCAACGACAGAACCAACGCATTATGAGAGTTCTAACTGG
TATTATAGCAGTCTTCTTCTGCACTGTCAGCCCAAACAAGATATTGTATT
TCGTCTGGGATGTGGACCCCCAGTTGGAAAAGGACTTGGAATCAAATACA
CGATATTATTTAAGGACAGTACAGTTTTTCTACTGGTCTCGAGTAGCTAT
CAACCCTATGATTTATTGCTTCTTTGATACACGTTTCAAGAAAGATTTCA
AAAAGTCCACTAGAAGGATGCGTGGCTTGAGTATAAGAGACAGTGAAGTT
CGAAGCCGATCGGCTAGCCAACGCACTTCCACAATACTCTCCGTACGATC
AAGAGCGAACAGTAGCTTTATAGGCGAGGCGGAAGAAGCTATCTCTCGAT
GTAACCGTATGAGTAAGATCTCCGAAATGGATGCAACGTCTTTGCAAACG
TTCGTTGAAGACAGGGGACGTCGCGTACGTTCAGCCACGGTAGATACGGA
CCTAAGTGTCTCACCAATGGCCCACAGCACATTGGTAAAACAAGGATCTA
GATAAATCGAAATTTATTATTGTATATGAGGTTCTCGTTTTATAAGAACT
TTAATATTTGTTAGGTGTATTATAAAATGCCGTACTTAGGTTAACAACTC
CTTCCGCCCTGTTCGAGTCTGACCAAGATTGGGGTATAATAGGGGAGTGG
CAAAATTTCGTCGAAAAGTGCTTAAGCTGAAAGTTTACGCCTCACGTTTT
TTATTACTTCACTCACTATAAAAAGGAGACATTTGGCTTCCACTTTTTTA
CAACTTGATGGCTTTTAAGTACGTTTTTTCCTCTTTTTGAACATTTATAT
TGCCAACTTCAACGACTTCAATTTAATTGACTCGATGAAACATGTTTTAG
CGATAATTGCTCCGACTGTCATGTAGTTTCCAATCCTTGTTTTAAATGTA
TATTTTTCGGAAAGCAACAGAATCTAACGTTATACAGTTAACATTAGATT
ATACTTGTTGAAAAATGAAAAATTTGCAAGTAACAATAGCTAATCAGATA
CAGATATGATATCTGTGGCCAAACCAAAGACCTAAATACTTGTACTGATC
GAATAAAATTCATGATGAAGCTTATTATCATATTATGTTATAAAGATTGT
ATCTAATATACATCATATCATTTTTCTTGCATTTATATAGAAACAAGTAT
TATTACAAATATATATTGTATAAAATATTATAATAATGATTATTTTTAAT
AGGTATTCTTTCATATGTATGATAGTCCCCTCCTTGTAAAATTCTTGTAG
CTTATTATACTCATTATATTTTTAAAAAGTCATATACATTATAGTATCAA
AAAGAGAAAACTAAAGTTATACTCACAAAAACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034425	XLOC_034425	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054652-exon-scaffold_243-1575043694:594803..597785	TCONS_00054652-exon-scaffold_243-1575043694:594803..597785	Clytia hemisphaerica	exon
TCONS_00054652-exon-scaffold_243-1510915933:594803..597785	TCONS_00054652-exon-scaffold_243-1510915933:594803..597785	Clytia hemisphaerica	exon
TCONS_00054652-exon-scaffold_243-1491911889:594803..597785	TCONS_00054652-exon-scaffold_243-1491911889:594803..597785	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_243	supercontig	scaffold_243:594803..597785 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0767873	0.0250736	0.130327	0.14211	0.694394	1.05752	0.397204	0.620643	0.43391	0.483721	0.0521679	0.418189	2.84934	2.44361	2.34762	1.15358	0.734437	1.32192	0.16421	1.19223	1.69478	1.82445	0.531354	0.268376	2.36875	1.66153	1.41211	1.0833	1.42444	1.86331

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00054652 vs. Swiss-Prot (Human)

BLAST of TCONS_00054652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00054652 (transcript) - C. hemisphaerica