|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054622 ID=TCONS_00054622|Name=TCONS_00054622|organism=Clytia hemisphaerica|type=transcript|length=657bp
GAACTAAAGAACTTAACTTGAATAAAAACAATCCTGATAATGGAGTCTTT
ATTTATATTGATCTCCATGGTCACGCATCAAAACGAGGCTGCTTCATCTA
CGGTAACCATTTTACCAGGGAATCAGAGATGGTTGACTGTATGCTATTAC
CGAAACTTATATCTGTCAATTCGttacattttgattttcaagctTGCAAT
TTCACCGAGAAAAATATGTACcataaagataagaaagatGGTCTATCAAA
AGAAGGTAGTGGGCGTGTGTCAATGTTTAAAGCACTTGGTATTATTCATA
GTTACACATTGGAATGTAATTACAACACAGGTCGTGCAACCAATCCTATA
TCACCTGCAACCTTGGATCAAGGGCGTGCCACACCTCCACCCCAGCCAGG
ATTTCCACCAAGATACACACCAGAGCATTATGAAGAGGTTGGACGAGGTA
CAGCTGTTGCTATTCTTGACTTGATCAATCGAAATCCTTGGTCTCGATTA
CCTACTTCTGAATACAAGAGTTTGAATGGAGTTCGAGACTGGTTAAGCAA
GCATATCAAAAACAATACGAAGGTTTTATCACAACAAACGAAAGTCaatc
taaagaagaaaaatggtGCTGGAAAATCTTCTATAAGtACAATGAAAGAT
TCCAAAT Run BLAST on NCBI transcript from alignment at scaffold_243:316347..319634- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054622 ID=TCONS_00054622|Name=TCONS_00054622|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at scaffold_243:316347..319634- (Clytia hemisphaerica)
GAACTAAAGAACTTAACTTGAATAAAAACAATCCTGATAATGGAGTCTTT
ATTTATATTGATCTCCATGGTCACGCATCAAAACGAGGCTGCTTCATCTA
CGGTAACCATTTTACCAGGGAATCAGAGATGGTTGACTGTATGCTATTAC
CGAAACTTATATCTGTCAATTCGTTACATTTTGATTTTCAAGCTTGCAAT
TTCACCGAGAAAAATATGTACCATAAAGATAAGAAAGATGGTCTATCAAA
AGAAGGTAGTGGGCGTGTGTCAATGTTTAAAGCACTTGGTATTATTCATA
GGTTGGTATTTCTCTGATTTTTCTTTTTGCCAATGTTGACTCTATCTATA
GACTGGAGCCGTTTAAGATTCGTGTAATGCAGTAATGTGAAAAAATTAGT
CTATAGAAACTAAAAATTTTGCCCCTTCCTAATGTTTGCTTATTTATGAT
TATGTCTGAATAGTTGTCTAGCATAATAGTCTTTCATGCTATAGTACTCT
ATCTATTATCTCCCTCTCTTTCTGTCTAACTGTCTGCGGCCGGGGAACTT
TTTCCTTCATTCAATGCTAGTAAAGTTGCTTCACAACTGACGAAATTTCT
GCGTTTAATCTCTTATTCGTGAAATGTGGACGTTTGATTTTACCCTTCCA
TGTGACGTAATCTTTTTACCTTGTTATAAAGGAAGTAGTATATTTTGCTA
GATATAATATTTCATCATTGATTTTCAAGTGAAACATTTAAAAAACCTTT
TCCTTTATTTTCTGTCTTTTAGTTACACATTGGAATGTAATTACAACACA
GGTCGTGCAACCAATCCTATATCACCTGCAACCTTGGATCAAGGGCGTGC
CACACCTCCACCCCAGCCAGGATTTCCACCAAGATACACACCAGAGCATT
ATGAAGAGGTTGGATTTTTCCAAAGATTTCTACTACTTTAAGATAATCAC
GGGAGAAGAGAGTGTGTATTACCGCGTCGCTTGTTTTATTCATTGAGTTA
CTATGGAGAACGATAGTCATTACTTTCCTTGATTTCAGGCTAGAGTTGCA
TCTTTGTCTTTTTTCGAGCAAGCCTGAAACCTTTAGTTTTTGTGAAAATG
TAGAAAAGTGTTACCTTTTCAATGTGATGATGCCACACATGCAGTCAATA
TCGTCAGTCGTCAGTATATAATTGTGTGTTTGGTGATTAGTTCATGAACG
CGAGATACAATAATCATTAACACGACATGTATTAGTTCACTTCGTTCGTT
CGTTCGTTCGTTCATTTAATAATCAAAGTTCCTCTACAGCAGTTATTATT
ATATTATTATTATTGATTATTGGTTATACGTCTATAACGAAACAATGATT
AACAGTTTTTGCCCCAGTTTTGGACGGATTGAATTTAGCCTTTCTTTGTT
TATAAATTATAAAGAAATGATTTTCCAAATCTGCCGGGTAATGGATTTTA
GATTGGAAATTAGTGGCTTCATTTTTCATTTCTATTCAGTACCGTAATCA
ACAAAAATTTTCACACAATAGGAAATCTGGCAAAGTCCTACTTCAAATGA
TATTTTAACAGCATCAAAATAAAATTTTTAGCATTTTTGCTTGTATCTAG
GTTGGACGAGGTACAGCTGTTGCTATTCTTGACTTGATCAATCGAAATCC
TTGGTCTCGATTACCTACTTCTGAATACAAGAGTTTGAATGGAGTTCGAG
ACTGGTTAAGCAAGCATATCAAAAACAATACGAAGGTTTTATCACAACAA
ACGAAAGTCAATCTAAAGAAGAAAAATGGTGCTGGAAAACCTTCTATAAG
GTATACTTTTGATTTCATTGTTGCTTTTGTAATGTTCATGACCCCCCGAA
GTGTCGCTCGAAAAGTTACCCGGACAAAAAGCGCCTACCTAACGGCCTTG
TAGATACACAAAACAAAGCCCTAAAATACCTTAAAATGTGTTAAAGATAA
TAGAACCACGAGGGACAAGTAGTTTTTAGTAATGAAGATTAATTTTTTGA
TTTATAATTAAAAAGCAAATCAATTCCCATGTTGACACTTGTTCAAAATT
TCAGAATGCTAATTCAAAAGTTCCTTTTCGAAGGGTTATTTAAGGACGAT
TTCGTCTTGTTNGTTCGTTCATTTAATAATCAAAGTTCCTCTACAGCAGT
TATTATTATATTATTATTATTGATTATTGGTTATACGTCTATAACGAAAC
AATGATTAACAGTTTTTGCCCCAGTTTTGGACGGATTGAATTTAGCCTTT
CTTTGTTTATAAATTATAAAGAAATGATTTTCCAAATCTGCCGGGTAATG
GATTTTAGATTGGAAATTAGTGGCTTCATTTTTCATTTCTATTCAGTACC
GTAATCAACAAAAATTTTCACACAATAGGAAATCTGGCAAAGTCCTACTT
CAAATGATATTTTAACAGCATCAAAATAAAATTTTTAGCATTTTTGCTTG
TATCTAGGTTGGACGAGGTACAGCTGTTGCTATTCTTGACTTGATCAATC
GAAATCCTTGGTCTCGATTACCTACTTCTGAATACAAGAGTTTGAATGGA
GTTCGAGACTGGTTAAGCAAGCATATCAAAAACAATACGAAGGTTTTATC
ACAACAAACGAAAGTCAATCTAAAGAAGAAAAATGGTGCTGGAAAATCTT
CTATAAGGTATACTTTTGATTTCATTGTTGCTTTTGTAATGTTTATGACC
CCCCGAAGTGTCGCTCGAAAAGTTACCCGGACAAAAAGCGCCTACCTAAC
GACCTTGTAGATACACAAAACAAAGCCCTAAAATACCTTTACCTTAAAAT
GTGTTAAAGATACTAGAACCACGAGGGACAAGTAGATTTTAGTAATGAAG
ATTAATTTTTTGATTTATAATTAAAAAGCAAATCAATTCCCATGTTGACA
CTTGTTCAAAATTTCAGAATGCTAATTCAAAAGTTCCTTTTCGAAGGGTT
ATTTAAGGACGATTTCGTCTTGTTCGAATAAGATTATACTTGTTACTTAC
TCGATCATTCCAATTTTGGTTCAATACTCGCGTTTTTTAGGGTCCAGACT
CTCTGAACTAAAATTGTGACGTACTCAAATTTTGAAATGTTTACATGAGG
GAAGTTTATCTTCTGTTCGATATTTAAATTAAGTTTTTACTGCTCTAATT
TTAAGCAAAATGCCTTTTCAAAAATGATATTACAAATAATGTTTTGAAAT
CATTTGTAGTGATGGAGTTAACCCAAAATGGTTCAAAAGTGGGTTATAGG
CTTCCTTTTTCTTTTCAGTACAATGAAAGATTCCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054622-exon-scaffold_243-1575043694:319334..319634 | TCONS_00054622-exon-scaffold_243-1575043694:319334..319634 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1575043694:318727..318862 | TCONS_00054622-exon-scaffold_243-1575043694:318727..318862 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1575043694:316978..317177 | TCONS_00054622-exon-scaffold_243-1575043694:316978..317177 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1575043694:316347..316366 | TCONS_00054622-exon-scaffold_243-1575043694:316347..316366 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1510915933:319334..319634 | TCONS_00054622-exon-scaffold_243-1510915933:319334..319634 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1510915933:318727..318862 | TCONS_00054622-exon-scaffold_243-1510915933:318727..318862 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1510915933:316978..317177 | TCONS_00054622-exon-scaffold_243-1510915933:316978..317177 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1510915933:316347..316366 | TCONS_00054622-exon-scaffold_243-1510915933:316347..316366 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1491911889:319334..319634 | TCONS_00054622-exon-scaffold_243-1491911889:319334..319634 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1491911889:318727..318862 | TCONS_00054622-exon-scaffold_243-1491911889:318727..318862 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1491911889:316978..317177 | TCONS_00054622-exon-scaffold_243-1491911889:316978..317177 | Clytia hemisphaerica | exon |
| TCONS_00054622-exon-scaffold_243-1491911889:316347..316366 | TCONS_00054622-exon-scaffold_243-1491911889:316347..316366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:316347..319634 - |
Blast
BLAST of TCONS_00054622 vs. Swiss-Prot (Human)
Match: CBPC5 (Cytosolic carboxypeptidase-like protein 5 OS=Homo sapiens GN=AGBL5 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.864e-69 Identity = 117/194 (60.31%), Postives = 146/194 (75.26%), Query Frame = 3
Query: 36 DNGVFIYIDLHGHASKRGCFIYGNHFTRESEMVDCMLLPKLISVNSLHFDFQACNFTEKNMYHKDKKDGLSKEGSGRVSMFKALGIIHSYTLECNYNTGRATNPISPATLDQGRATPPPQPGFPPRYTPEHYEEVGRGTAVAILDLINRNPWSRLPTSEYKSLNGVRDWLSKHIKNNTKVLSQQTKVNLKKKNG 617
++GV Y+DLHGHASKRGCF+YGN F+ ES V+ ML PKLIS+NS HFDFQ CNF+EKNMY +D++DG SKEGSGRV+++KA GIIHSYTLECNYNTGR+ N I A D GRA+PPP P FP RYT E +E+VGR A+A LD+ NPW R+ SE+ SL +R W+ KH++ N++ LS V + KK G
Sbjct: 424 ESGVAYYVDLHGHASKRGCFMYGNSFSDESTQVENMLYPKLISLNSAHFDFQGCNFSEKNMYARDRRDGQSKEGSGRVAIYKASGIIHSYTLECNYNTGRSVNSIPAACHDNGRASPPPPPAFPSRYTVELFEQVGRAMAIAALDMAECNPWPRIVLSEHSSLTNLRAWMLKHVR-NSRGLSSTLNVGVNKKRG 616
The following BLAST results are available for this feature:
|
