TCONS_00054621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054621
Unique NameTCONS_00054621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054621 ID=TCONS_00054621|Name=TCONS_00054621|organism=Clytia hemisphaerica|type=transcript|length=442bp
CCTATAGCTCCGGTGATTCCAAAGATTGTTCCTTGATAAATTCCACTACA
AATGTTGATAATTACAATACACCCTAATGTGATGTAGAAGAATTTATCAG
TCCAAGCTGAAGTATCCACATTGACCAGCACTGTGGTGACAATGAAACAG
ATGGTCGAGATGATCAACGTTGAAATGACACGACCGTTTCTCGAAACTCG
ATTTGTCAAACATAAATTGATAATCAGTGCAATACCGCATGGTATTTGTG
AGCAAATTGAAAAAGCACTTTCGAACAATTTCAAATCACTTTCATTGTTT
TTCAGTTTGCTTTTAAAGTACTGGTCAGCGTTGATGAAGAAATTCCATGG
TAGTAACATTCCAATGCCGATTAAGAAAAAGGAGAAATAAATTTTCGGAC
GGTTTATTGTGTCCGAATAGATTTCCCCTTCATTTTCGTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_243:312422..312924-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054621 ID=TCONS_00054621|Name=TCONS_00054621|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_243:312422..312924- (Clytia hemisphaerica)
CCTATAGCTCCGGTGATTCCAAAGATTGTTCCTTGATAAATTCCACTACA
AATGTTGATAATTACAATACACCCTAATGTGATGTAGAAGAATTTATCAG
TCCAAGCTGAAGTATCCACATTGACCAGCACTGTGGTGACAATGAAACAG
ATGGTCGAGATGATCAACGTTGAAATGACACGACCGTTTCTCGAAACTCG
ATTTGTCAAACATAAATTGATAATCAGTGCAATACCGCATGGTATTTGTG
AGCAAATTGAAAAAGCACTTTCGAACAATTTCAAATCACTTTCATTGTTT
TTCAGTTTGCTTTTAAAGTACTGGTCAGCGTTGATGAAGAAATTCCATGG
TAGTAACATTCCAATACCGATCAGGAAAAATGATAAATAACCAANTGAAG
AAATTCCATGGTAGCAACATTCCAATGCCGATTAAGAAAAAGGAGAAATA
AATTTTCGGACGGTTTATTGTGTCCGAATAGATTTCCCCTTCATTTTCGT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034415XLOC_034415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054621-exon-scaffold_243-1575043694:312568..312924TCONS_00054621-exon-scaffold_243-1575043694:312568..312924Clytia hemisphaericaexon
TCONS_00054621-exon-scaffold_243-1575043694:312422..312506TCONS_00054621-exon-scaffold_243-1575043694:312422..312506Clytia hemisphaericaexon
TCONS_00054621-exon-scaffold_243-1510915933:312568..312924TCONS_00054621-exon-scaffold_243-1510915933:312568..312924Clytia hemisphaericaexon
TCONS_00054621-exon-scaffold_243-1510915933:312422..312506TCONS_00054621-exon-scaffold_243-1510915933:312422..312506Clytia hemisphaericaexon
TCONS_00054621-exon-scaffold_243-1491911889:312568..312924TCONS_00054621-exon-scaffold_243-1491911889:312568..312924Clytia hemisphaericaexon
TCONS_00054621-exon-scaffold_243-1491911889:312422..312506TCONS_00054621-exon-scaffold_243-1491911889:312422..312506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:312422..312924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.296965	1.12215	0.337337	29.4208	14.7657	3.05589	3.29884	0.384932	0.953602	0.617059	0.691237	0.910675	0.643904	0.606645	4.16984	3.28467	3.08084	0.323722	0	3.08398	3.4582	0.719605	1.81363	2.52809	1.31312	1.40913	0.67042	3.37247	2.52071
Blast
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BLAST of TCONS_00054621 vs. Swiss-Prot (Human)
Match: S29A3 (Equilibrative nucleoside transporter 3 OS=Homo sapiens GN=SLC29A3 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.664e-29
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = -3 
Query:    6 YFSFFLIGIGMLLPWNFFINADQYFKSKLKNNESD-----------LKLFESAFSICSQIPCGIALIINLCLTNRVSRNGRVISTLIISTICFIVTTVLVNVDTSAWTDKFFYITLGCIVIINICSGIYQGTIFGITGA 389
            Y  FF +GIG LLPWNFFI A +Y+  KL+N+ S            L  FES  ++ S +P  + L+ N  L NRV+ + RV+++L +    F+V T LV VDTS+WT  FF +T+ C+VI++  S ++  +I+G+TG+
Sbjct:   54 YIIFFSLGIGSLLPWNFFITAKEYWMFKLRNSSSPATGEDPEGSDILNYFESYLAVASTVPSMLCLVANFLLVNRVAVHIRVLASLTVILAIFMVITALVKVDTSSWTRGFFAVTIVCMVILSGASTVFSSSIYGMTGS 192
The following BLAST results are available for this feature:
BLAST of TCONS_00054621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S29A32.664e-2941.01Equilibrative nucleoside transporter 3 OS=Homo sap... [more]
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