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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054589 ID=TCONS_00054589|Name=TCONS_00054589|organism=Clytia hemisphaerica|type=transcript|length=1004bp
GTCGGCGACGCACAATCGCGCGTGGACGACCATCTACAAGGGAAACAACA
CGTTGGGTATGCCAAAATCAAATCCACACTTGACGAAATGAAGAACCGGT
CATGGGAGAGACGTGGAAGagaaaaatcagagaaaagcGACCGCGATCGG
GATGAACGGGACTCGGAACGTTCAAAGCGGAGAGAAAGATCTGGCGAACG
AAAGAGCAGTCGGAGAAGTCGATCAAAGAGTCGGGATCGCCGACGTGATA
AGAGCCGTGAACGTAGAAGAAGTCGGGATAAGCGTGACGAACGTCGTTCA
AGACACGGCAGTCGTGATCGGGATCGGGATAGAAGTCGTCGGGATTCGAG
AAGAAGTAGTCGTCGTAGTCGTAGTCGAAGTAAGGATCGTAGGCGAAGAA
GTAGAAGTCGGGAACGAAGCAAGGATCGTCGCTCAAGACACGGTAGTCGG
GACCGCGATCGCCGTGAACGAAAATCGTCAAAAGAAAAGGAACGTCGTAC
GGAAGATAAAATGGACAAAGGGACAGCGATGGTCGATTCGACGGAACAAA
ACGGGACGGAAGAAAGACGGTTAAATGAAGGGGAGGAAAAACAAGTTTCG
GCANTTCCGGACCAGGGTTTTATAAGGATTACAGTATGTTAGGTTCGGTT
CAAAATTACAACAATTTGGATATCTTTGATTGTTTTCCATAGTTTTTCTG
TTTCTCTGTCTTTTGGTNAAAGGTATAAATTCTACTGAAAGCATAGATAA
GAAAGACCAGACGAACGAAGAAGCTATCGACTCAAACACCATCATGGAAT
ACTGAGATGTGCACAAACATTCTGAAGGTTTTGGATGTTGCGTGTCTGGT
AAAACTTGATTTATGGAAAGAATCAATCTCGTACATAATTTACCTTTTGA
TTAAGAGTAATTTTgatgaatatgtttttaaaaatgaaaaataatcgGGC
TCTTTTTCTCGTGTCTTTTCTGCCACTTGTACACCCCTTTGTTATAAGAA
CTGG Run BLAST on NCBI transcript from alignment at scaffold_243:51239..54067- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054589 ID=TCONS_00054589|Name=TCONS_00054589|organism=Clytia hemisphaerica|type=transcript|length=2829bp|location=Sequence derived from alignment at scaffold_243:51239..54067- (Clytia hemisphaerica)
GTCGGCGACGCACAATCGCGCGTGGACGACCATCTACAAGGGAAACAACA
CGTTGGGTATGCCAAAATCAAATCCACACTTGACGAAATGAAGGTAATTA
CCCAGCTGGCACAAGACGTTGTTTCAACGTTCATCTAACGTTATATGGAC
GTTGTGAACGCTAGATAGACGTCGAAAAAACGTTATGTGCCAACTAGGTA
ACCAATCAAACCAATTATTCAAATATAACATACACCTACCCCTGTCGTGG
AGATTTTCGAAGGTCCTTAAAAGGGGCAAATAATTTTCGGAGGGTGGGGG
CAATTTACACAAGGAATATCTTGCATTTAAAAGCCATGGCAAAATCATTC
CCCAATCTCTGTAGGGGTATCCATATAGAATGTACAAACAGAAGGAAAAG
ATTTCTATTGTTCTCTGATAACAAGGGGAGAGTTGTCAAATATTCGGAAA
ATTTTTGCCTTCATACTACGGTATATGGACGACCCCTGGGAATGCTTAGA
GCTCTTTTTTAGAAGAAAAAGCACTGATGCTGTTCTCGAGATGGATAGTT
GAATGTTTCAGCTTAATAAATCCTTTCTTCTCGCACACATCTTTAGAACC
GGTCATGGGAGAGACGTGGAAGAGAAAAATCAGAGAAAAGCGACCGCGAT
CGGGATGAACGGGACTCGGAACGTTCAAAGCGGAGAGAAAGATCTGGCGA
ACGAAAGAGCAGTCGGAGAAGTCGATCAAAGAGTCGGGATCGCCGACGTG
ATAAGAGCCGTGAACGTAGAAGAAGTCGGGATAAGCGTGACGAACGTCGT
TCAAGACACGGCAGTCGTGATCGGGATCGGGATAGAAGTCGTCGGGATTC
GAGAAGAAGTAGTCGTCGTAGTCGTAGTCGAAGTAAGGATCGTAGGCGAA
GAAGTAGAAGTCGGGAACGAAGCAAGGATCGTCGCTCAAGACACGGTAGT
CGGGACCGCGATCGCCGTGAACGAAAATCGTCAAAAGAAAAGGAACGTCG
TACGGAAGATAAAATGGACAAAGGGACAGCGATGGTCGATTCGACGGAAC
AAAACGGGACGGAAGAAAGACGGTTAAATGAAGGGGAGGAAAAACAAGTT
TCGGCANTTCCGGACCAGGGTTTTATAAGGATTACAGTATGTTAGGTTCG
GTTCAAAATTACAACAATTTGGATATCTTTGATTGTTTTCCATAGTTTTT
CTGTTTCTCTGTCTTTTGGTNAAAGGTATAAATTCTACTGAAAGCATAGA
TAAGAAAGACCAGACGAACGAAGAAGCTATCGACTCAAACACCATCATGG
AATACTGAGATGTGCACAAACATTCTGAAGGTAGGTTGTATTAATGTTTA
TCGCAACAGACAAATCAAAACAATTTGGAAAGTCAGTGAATTGGTCATAA
TTATAACAGACAAAATGTCTGAAGAGAGAGTATCAAAATTGGTAATTCTT
TCCCTATTTGGATAAAAAAGGATGAACTTCTGCATGATGGTATAAGTATT
TTTTCAAACGAGATTTTTAAAGAGTTTCGTGCCCCCTAAGCGGACCTTGA
AATCACACAATTATTTTTTGAAATTCACGCAAGGTTTTCCAGTTCATACA
GCTTTTTTTTAATTTTCAGGCATTCACGCAAGTGAGCCCATTCACTCATT
CACNAATTCTGAAATTTCAAATTTTCAAAATAATCTGACGAAGCAATTAC
ACTTCTGAGGTTTCCCTTAACTATAAGTAGCCGATGCCACTTGGGCCTGG
AGCGAGAAATTATAATTATATCTTAAATTTGGACTATACGAAGTTTCATC
ATATTGTAATCATTCCAAAAGTCGATAAGATAAGTGATTTTTACAGGAAA
CTTGAAAATGTGTTCGTCAGCCATACTTTACCTTTGTGTTTCAAATGATG
AGTATTGTTTGTTTTGTCATTATTGATGTTCCCGCACCGTATTTCTTCAA
ATAAATAAGCTTCTACCTTATCGGCCTTTTTTTACACCGGCCCCTTTTCA
CACCGACCCTTGTTACACCAAGCATATTTTTTTCCATTTCTAGCCCAACC
TAAAGTTAATTGCGATTTCTTACACCGGCCCTTATTACGCCAGCGACGAA
AAGATAACGCCGGCGTGAAAAGGGCCGGTACAGGTACCCGAATTAATACG
GTATTTATTAGCCGGACAGGACTATAGAGCAGGTTTTGATGCTTCTCCCG
TGAAAAAGTCTATTCAACTTCTCACACCAAACTAAAACATCACCTTACAA
ATAGTTTCATTCTCCTTTTTTCATCAAAGCGGATTTGCTCCATCCTCGTG
CTTCTTTTCGAACTTGCCTAAGGCTTTTTTCCATTCTAGTGGAAATGTTT
TATTTGGGTTGTTGAGCGAACTTTTAGATTTTTAGCCGTACTCTCATAAT
ACGGTTTATATGAAAAGTCATCCTTAAGACCGTACCGGAGCGATGCGAAA
CCATAGTGTCTGCATATGGTCTCCTCGTCATTAGCAACGACTTGAGTTTG
TTGGAATTCCCCGTGGGTCTATTCTTCCGTATACTTTCTCGCAGCTATTG
GTCTGTACGTTGGAAGAGAAAATAATAAAAGGAAAGTTGTTCCGGGGGTC
AATAATTAAAAACTTTTTTTAACGACTATCTTACTTTCTTTTTAATCTTC
AGGTTTTGGATGTTGCGTGTCTGGTAAAACTTGATTTATGGAAAGAATCA
ATCTCGTACATAATTTACCTTTTGATTAAGAGTAATTTTGATGAATATGT
TTTTAAAAATGAAAAATAATCGGGCTCTTTTTCTCGTGTCTTTTCTGCCA
CTTGTACACCCCTTTGTTATAAGAACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054589-exon-scaffold_243-1575043694:53975..54067 | TCONS_00054589-exon-scaffold_243-1575043694:53975..54067 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1575043694:52738..53471 | TCONS_00054589-exon-scaffold_243-1575043694:52738..53471 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1575043694:51239..51415 | TCONS_00054589-exon-scaffold_243-1575043694:51239..51415 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1510915933:53975..54067 | TCONS_00054589-exon-scaffold_243-1510915933:53975..54067 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1510915933:52738..53471 | TCONS_00054589-exon-scaffold_243-1510915933:52738..53471 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1510915933:51239..51415 | TCONS_00054589-exon-scaffold_243-1510915933:51239..51415 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1491911889:53975..54067 | TCONS_00054589-exon-scaffold_243-1491911889:53975..54067 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1491911889:52738..53471 | TCONS_00054589-exon-scaffold_243-1491911889:52738..53471 | Clytia hemisphaerica | exon |
| TCONS_00054589-exon-scaffold_243-1491911889:51239..51415 | TCONS_00054589-exon-scaffold_243-1491911889:51239..51415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:51239..54067 - |
Blast
The following BLAST results are available for this feature:
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