|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054588 ID=TCONS_00054588|Name=TCONS_00054588|organism=Clytia hemisphaerica|type=transcript|length=814bp
GAGGCGAGTCTGCTACCTTAGGactgttcaaaaaagtaaacattACCTTT
TGTTTTTCATGGAAACAAGATGGCTGAGCACCTTGGAACTGAAATCTTTG
AAACCCGATTTCCTGACCATGTATTTCTTCAATTGACATTGGTTAAAGCT
AAGCGGATATGTTTAATTCCTATTGTTAATAGCAGCATTCTTTCAAACGC
CACCCAAACCACATCCATCCTTGTTATAATCAAGTGAAAATGTGCCTTTT
CACAAATGCTGAAGAAGTAACTGTAGTCTTGTCTTTTAAAGAATCTCAAT
TTCCAAATGCTCAATGGAGTACATTGAATCTCATTGAAAGGTAGATTGAT
GAAGAGTTTTCTACACGTAAAACAAGAACACGTGCACACAATGTTCGCCC
GAATTATTGAATTCCGCCCAATACACATAATCTTCACCGAACCATATTTT
CCAAACATCACCACTGTTCACTTTCTTTACACCTTGTGAAGTCGGTAGAA
CCAACTCGTTTGACATGTGATCAAAATCAACCAATGGGATCTCTTTATGG
TTTACTCTCGTTTCGAATTCAGAATcagGGAATAATGGTCTATCTTGTGA
ATCTGTTATAAGTGTTAGCACAGTGTTCTCTTTATAACAGCATCCACAAG
CCCAACGACTTACGAGTCTTTCACCACAAGCAATGTACCCAGAGACATGT
TGCAATTTGACAAAGGCGATAGAGCCTGCATCTTTGATCGTAAAGAAACC
AGGTGAACTACCTTTTCCTTTGTAACAAACTGGACTGGTTGTCACTTGCT
TGTATCCGGCTGCT Run BLAST on NCBI transcript from alignment at scaffold_243:951460..952810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054588 ID=TCONS_00054588|Name=TCONS_00054588|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_243:951460..952810+ (Clytia hemisphaerica)
GAGGCGAGTCTGCTACCTTAGGactgttcaaaaaagtaaacattACCTTT
TGTTTTTCATGGAAACAAGATGGCTGAGCACCTTGGAACTGAAATCTTTG
AAACCCGATTTCCTGACCATGTATTTCTTCAATTGACATTGGTTAAAGCT
AAGCGGATATGTTTAATTCCTATTGTTAATAGCAGCATTCTTTCAAACGC
CACCCAAACCACATCCATCCTTGTTATAATCAAGTGAAAATGTGCCTTTT
CACAAATGCTGAAGAAGTAACTGTAGTCTTGTCTTTTAAAGAATCTCAAT
TTCCAAATGCTCAATGGAGTACATTGAATCTCATTGAAAGGTAGATTGAT
GAAGAGTTTTCTACACGTAAAACAAGAACACGTGCACACAATGTTCGCCC
GAATTATTGAATTCCGCCCAATACACATAATCTTCACCGAACCATATTTT
CCAAACATCACCACTGTTCACTTTCTTTACACCTTGTGAAGTCGGTAGAA
CCAACTCGTTTGACATGTGATCAAAATCAACCAATGGGATCTCTTTATGG
TTTACTCTCGTTTCGAATTCAGAATcaggtagactggagtcgtttataat
gcgtgtaatactaatactaccaatactactaataataatacgggatttag
tttgtataaacgactggaagaatccggtgttccagccttatagatacagg
ggctagctacgcagaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatcaactcaa
atgaaaaactttcaatacacaaatccacacacatgtttttctcaagaaat
attttgatcgGGAAAAACTTATAATTGcaaaatattgacacttttctttt
gtttgaagttaGTGCACAAacgtttctagacgactaaaattgttctcttt
attactttttgctttatttctactatgtatgaattagtcgtctagcttgc
tagactaagaATCAGGGAATAATGGTCTATCTTGTGAATCTGTTATAAGT
GTTAGCACAGTGTTCTCTTTATAACAGCATCCACAAGCCCAACGACTTAC
GAGTCTTTCACCACAAGCAATGTACCCAGAGACATGTTGCAATTTGACAA
AGGCGATAGAGCCTGCATCTTTGATCGTAAAGAAACCAGGTGAACTACCT
TTTCCTTTGTAACAAACTGGACTGGTTGTCACTTGCTTGTATCCGGCTGC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054588-exon-scaffold_243-1491911889:951460..952037 | TCONS_00054588-exon-scaffold_243-1491911889:951460..952037 | Clytia hemisphaerica | exon |
| TCONS_00054588-exon-scaffold_243-1510915933:951460..952037 | TCONS_00054588-exon-scaffold_243-1510915933:951460..952037 | Clytia hemisphaerica | exon |
| TCONS_00054588-exon-scaffold_243-1575043694:951460..952037 | TCONS_00054588-exon-scaffold_243-1575043694:951460..952037 | Clytia hemisphaerica | exon |
| TCONS_00054588-exon-scaffold_243-1491911889:952575..952810 | TCONS_00054588-exon-scaffold_243-1491911889:952575..952810 | Clytia hemisphaerica | exon |
| TCONS_00054588-exon-scaffold_243-1510915933:952575..952810 | TCONS_00054588-exon-scaffold_243-1510915933:952575..952810 | Clytia hemisphaerica | exon |
| TCONS_00054588-exon-scaffold_243-1575043694:952575..952810 | TCONS_00054588-exon-scaffold_243-1575043694:952575..952810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:951460..952810 + |
Blast
The following BLAST results are available for this feature:
|
