TCONS_00054543 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054543
Unique Name	TCONS_00054543
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2649

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_243:566124..580501+

transcript sequence

>TCONS_00054543 ID=TCONS_00054543|Name=TCONS_00054543|organism=Clytia hemisphaerica|type=transcript|length=2649bp
tttagaagctTTTTACAATGATTTGTTGACataatgaaaaatattgataa
tcAATGAATCTGAAGCATGGGGTACATTGATTGGCAAAGGATTCAAACAG
CTGACGTTGAGAGAATCAGTTTAGACGAAGATGCTGcagaagaatatttc
aatttgctCCTCAATAGTGATCTATCAGAGAGTGATGGAAAGCTGTCAGA
AGCTGACACAGTTGTCAAACTATTCAATGTCACTAAAGCTGTCCTGAATA
TAAAAGGAATACAATATGAAACAGCAGTTGATGAAATGGAGAGGCTTATG
GCAGAAAAAGATGGAGGCAGGGATGGAGAGGCAGTTTTGATGGCAGAGAA
TCAAGAATTGAAAGCAGAAATTGCTCAATATCAGAAATATTCAGGAACTG
GTGATAAATACCTACGAGGGGAAATCCAGCAACTTACAGAAAGAATaaag
ATGCTGACTGAAGAACTCAACGAAGCAGACAGACGTCTAATGAAAGAACA
AGAATCTTTTGACAGAttaacaaaagatttgaaagaCAAAGATCAACGTT
ACCATGATACCAAACGACAGCTTGAAAGAATGCAAGATGATGTAAAGGAA
TATCAAAGACAATTTCAATCTCAGaGGGACAGCATGATCATGAGAAGAAG
TAATGCAGATGACGTACGGGACCAGATGAAAGAAAAGAATCGAGAATTAT
CCAGGAACCTTGATGAAATAAGTGAACTTCAGAAAGCCAATGACCGTCTT
CAAGAAGAAGTGAAGAATGCTACCAAAGAAATGGAATCTGCAACCAAAGA
TATGAATGAAATGGCTGACGATTACAGCAAATTGAAGggGGTACTTGAAG
AGACTGATCGTGTTATGGAAGATATGAGAAAAGAACGCGAGATCTTAAGA
TCACAGGTGCAAGACATGGAACAACAACTTGTTCGTAAAGCAGAAGGTGA
CGATGACATTATGATTGCTCTCAACAAAAAGGTTGCAGAATGGAAGGATA
TTCTAGCTGCAAAAGATGCTGATATCGAATCAAAAGGGAAAGAATTGTTG
TCACTGCAAAAACAACTTCACAGTGCAAAAATGGATTCGGATAGGAACAC
TGTTATCGAGTTAATGGAGGCAAATGATAAGAAGGACGAACAAATTAAAG
ATTTGAAATCAAGGCTTGACTTGGCTAGCAAAGACTATGACGAAGTGACT
GGTCACATTAAAACATTGAAATCACAAACAAAAGACGGTGCTCCTTCCTT
gcaacaacaaagaaaaattcaatcaCTCAATGAAACATTGCAACAGGAAC
AAGTGACAATTGTCAGAGAAAGGGAACGTGTCATCGAGattgaGCAAGAT
ATTGTAGAGAAGGATCGCCAAATTGCTGAACTTGTCAACCGAATGATCCA
ATATGAAAAAGGACAATATGGCCTGACTGAAGCTGTACAAGAAATCAAAG
ATTGTAGAGCTCAGATACGTCTCAGAGATAGAAATATAGAGGATTTGACA
AGAGAGATCAACCAATTGAATCTTGACTTTGACGACGTCCATCTTGAGAA
TGAAGAGATGAGAGATCGTCTTGGTATTGGATCAAGAGATGAGTTAGATG
TGGAAAATATTCGACGCAAACGTGCCGTGAAAGAAGAACAAGCTAGCGCC
CTGAATAGAGTCTTACAAAAAGAGGTTGAGCGGCTTGAAGAAGAGCGTTT
AGTGTTGAAAAAGGCGTTGAGAAAACATGCTTTGGACAGGGGTGAACGtg
CTGTTGAACTTGGTTTGTCAGCATTAGACATGGAGCCTCTAGATGAAGAA
GTAGTCTTATCACCTTCCAAAAGCAAAATCATCAAAGTTATTCAACAGCC
TGACCCAGTTCCGCAACGTGAAAATGTTTCTTCAAATATACCAACTCAAG
ATTCGGAGGTCCTCGTGCTACAAAAAAtgcaatttgaaaaagaaaacacg
CAATTGAAAGATGAAAATCGTCAACTTGAATTGGCGTTGAGAGAATTGAA
AGGTGCAATGGATTCAGgtgACAAAGACATCAACTCACCATCATTAGATA
AACTTGTTGCGATGATCGAAGAAAAACACGCTACTGGTCAGTATGACACA
ACAGTACATCTCAAATCACAGATTCAACATCTGTCTGGAAGGAATGAAGA
ATTGAGGCTTGAGTTACGTAGTGCACAGCtcgaaataaacaaaacaatat
cGGAACTAGATGCCAGAGctcagaatattgaaaatttggaaaaggaAAAT
GGTGCTTTACGTGAGATAAGTCAAGGTATCATCAAATTGAATCCATTGCC
CTTACCCGAAGGCATCAAACCAACTTCTAAAGATATAATTGCGTGCTTGA
ACGAGTACATCATTCAAATCTTACAGGAAATATCAAACAAAGAGACGTTA
TGCTCAGAAATGGAATCAGCTTTGGAAGACATGCGCCGTAAATATTCCGT
CGCATTGCATCAACAGAGTATTGTGTACAAAGAGCACTTAGCGGTGAAAg
tggaaaaagaagaagaatcgaAGAAATACGCAGACGAAAAAGAAGAGTTG
CTACTGAAGAAAAGTCAAACTGACGTTCGCTTGCAAGAAttcgacCGCTT
ACTAGACAACCTCAGTACTGAGCCTGGCCAACACAAAAAAATGCTGACG

Run BLAST on NCBI

transcript from alignment at scaffold_243:566124..580501+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054543 ID=TCONS_00054543|Name=TCONS_00054543|organism=Clytia hemisphaerica|type=transcript|length=14378bp|location=Sequence derived from alignment at scaffold_243:566124..580501+ (Clytia hemisphaerica)
tttagaagctTTTTACAATGATTTGTTGACataatgaaaaatattgataa
tcAATGAATCTGAAGCATGGGGTACATTGATTGGCAAAGGATTCAAACAG
CTGACGTTGAGAGAATCAGTTTAGACGAAGATGCTGcagaagaatatttc
aatttgctCCTCAATGTATGctgtatattttgtttttttgtaatatCTGA
TGCAATCAACTAAGTGCAAGCAGcaatttatttgtttcaatttttttcac
ttctTCTTTAACTGGACAAAATTTGTTCAATAATTTCAAAGCCCATCAAT
TGTAGGATTTGTATTTGTATTTGGATTTGTAGAATAGACCTTAAGGGGTC
TATTGATTATCCTTTGTATGTTCGTTTACAGTCGTTTGTCGGTCTGTTAT
TTTGAGcttttctcaggtttggctcatttgatcttttttatttttgctat
tttttgcacaatgatgcaaaatagtAATCCCCGATTAATATGATGGAGCC
tgagtttcgaaaaaaaattgtttatggTTGCCAGATAGGGAAATGTCTTG
GAAAAAGCTCTTCAggatttttttgagattttatcattagtttttcctag
tTTTTTGTACATTGACGTGTACTGCCATTAATTTGTCGAAAAGGGTCTTC
TAACTATTTCCAGTCTGAAGAACCGTAAATATCCCAGAAATTGCCGTTTT
TTGTATTACCataataattttcttaattttatttGTCATTTCTTTACAGT
ACAAGGTAATTCTTGGTGATGCGcaaaacttagcattgtttgatttccaa
agaatattcattttttcaatagGGAACTCAGCTCAACAGCTGAAAAATCA
GCCAAAAGCAGGTTTTTCCCTTTTTGGAGTTACATTTAGACAGATTCTTT
TTGCACATTAAAGCAAAATAGTATCTCCCAAAATGTATTTgagccaaatt
ttccaaaaaaaatttggttgCTAGATTTCGGAAATGTCCTGAAAAAAGTG
CTCTGGATTTTCCTGAGATTTCATTATCATGCAGTATCATgtagttttta
ttgatttcttgTTTATCGATTACACTGATAGGTcaataaaagtatcactt
gttttattaCTAAGTAATTATTTGATATTCATACTTAATATCCACTTGAC
ATTATGTTCATCATCTTATATCACCTTTCAGAGTGATCTATCAGAGAGTG
ATGGAAAGCTGTCAGAAGCTGACACAGTTGTCAAACTATTCAATGTCACT
AAAGCTGTCCTGAATGTGAGTAAACTTCGATtgatctattttagtgaaaa
tggtGATATATTTAAAATCAAGGGTCATCAAATCTCTTGTATGCATCTAT
ATTCAAACATATTTTGACTGCACTTTTNAGGGTCATCAAATCTCTTGTCT
GCATCTATATTCAAACATATTTTGACTGCACTTTTATATTATTACTACCA
GAAGTTAGCAGCCTCAATAATCATTCTTCTTTTCAGTTTACACTTGtttc
tttaagaaagttttGGACTTCCTATATTATTTCTATAGATAAAAGGAATA
CAATATGAAACAGCAGTTGATGAAATGGAGAGGCTTATGGCAGAAAAAGA
TGGAGGCAGGGATGGAGGTAAATGCTGAGACTTTTAACCACCGAtactct
tttttttcatttttctctttttttataactttataatgATTATTTATTAG
GatttattataaaaacacttcaaaatgtttcaattttattcCAGAGGCAG
TTTTGATGGCAGAGAATCAAGAATTGAAAGCAGAAATTGCTCAATATCAG
GTtataaaatttcgaaattttactATACTAGTGGGAAGGACATCTACCAT
TGGATATAATGTTCAATATTCAATATTACTTTTATTACCCTCTATTACCT
CTATTTTCTTTGCTTGACTTTTTTTCAACGAAACCAGTAAAATATTGAAT
CAATTGAAGGTGATATTAGGGAAGATGTCAAAAATGACAGAGAGATGTTT
AATATAGATACGTTTAATTTGCAGAAATATTCAGGAACTGGTGATAAATA
CCTACGAGGGGAAATCCAGCAACTTACAGAAAGAATaaaggtttgttttg
gtttatcaCTGCTTTTAGATTTTAATTAAGATTGAGAAAAAATATCTATC
TGTTGCACAATAGAGAAAGGGTTAACTTAATAACTTTTggtgtaaaaaaa
ctttcaaatcggTTCAGTCAATCGAAAGTTATGTAACGAAAACTCTAATT
TTCACCTACCCAAAATTACCTTAAATCGTAAGCTTACAATATctagaaaa
acgtgtatacttTTTTTAGTGCACCTGGTAGTAAATTTTCTGGTGCCACA
TAACATCAGCTATCTGGGTAATGATTCACACATATTTTGTGGAGTTTTTA
AACTGCATATCTTTTATACAAAAAGCAACGTAAGattttataacaaaaca
taagagaccaaaaatcaaacaaacctGTCATTGCTACAATTTGAAATCCC
ATCGTATTACCTTTCAGATGCTGACTGAAGAACTCAACGAAGCAGACAGA
CGTCTAATGAAAGAACAAGAATCTTTTGACAGAGTATGATATATCTTTCA
TCACATGTGACTTTAAATACAAATAAAATCGAGATTTCTGATAAAAGAAT
TATCCAGAATGTTTCGAATTGCAAACTGCCATCAGGGTTCTAAATGTTTC
ATAACGTTCCAAATTGGTCATTAACATTCGTAACGTCCAACAatcattca
atttcattttagtttttCAAATCACTTTTTATGGCACTTGTGTGATTATT
TCTATAAGAGAGACTTTTTGGAAGCTAAACTATTTCaatctatttcaaaa
gttttcttgtCAATATGGTAATTCAATAATAGCAACCTGATTTCAAAAGC
TCTACATAAAAAATGTGTGAAGAATAACCTATATATTCCATGTTAAAATT
ACAGGCCTTTGAATATCAGAAGATACTTTTAGCTCTActctaaagaaaat
tttatttgaattttgaaacacaccaattataaaaatctttttttttgtag
cNTTTGAATATCAGAAGATACTTTTAGCTCTActctaaagaaaattttat
ttgaattttgaaacacaccaattatgaaaatcttttttttttgtagttaa
caaaagatttgaaagaCAAAGATCAACGTTACCATGATACCAAACGACAG
GTATATTGGTTAAATTGGAATCATTCTCCTCTTGGAAAGcacattcaaaa
aataaaaaactttatcTTATCCACAGCATTGGGATAACCTCCCAATGTTT
TTCATTCTTTGCAACTACCTTCGTTTCcatcaattttcaaaagaattttt
attttatcctaaTTATGTTGTTAGCTTGAAAGAATGCAAGATGATGTAAA
GGAATATCAAAGACAATTTCAATCTCAGGTACTTAATCTTCTTCTTATAA
ATTTTCTACATACCCAAACTTCcaaaaaagggttattttttGGAGATAAC
CTTCAAGGAAGGGTCTGTTTCATTTATCACAAGTTTACTCTTTCCCTCTT
CTATTAACTTACATTGTTAAAACAATGAACTTTGTTTTTGTCTCTAATTT
ATTAATTGGTAAATTTATGTACTTAGTTGCtgttaatttgaaaaatctgt
tttgattttcagaGGGACAGCATGATCATGAGAAGAAGTAATGCAGATGA
CGTACGGGACCAGATGAAAGAAAAGAATCGAGAATTATCCAGGAACCTTG
ATGAAATAAGTGAACTTCAGAAAGCCAATGACCGTCTTCAAGAAGAAGTG
AAGAATGCTACCAAAGAAATGGAATCTGCAACCAAAGATATGAATGAAAT
GGCTGACGATTACAGCAAATTGAAGGTTTTTCCAAATTGTTGATCTCTTT
TCTGGTCCCATTGCATTTAAACAAAATTCATTTATTTAATCGCacaattt
ttcttatttggcgcaccctcaaagagagcaatttaatcgttaattgcatc
ctgtagagagcaataaattaatcgttaatcacactcttcgatgccgcgcc
aatgtttacaagattgattttaatatttaatttcttacatttttcttaca
tttttcttACATTTATTTTACATCGAactttttaattgcattcgaaattc
attttgtgagaaagaaagtCTATGaacaacaattaaaaaaaaataagaga
gaaaagaaaaatataaaactctcagtgtaatttctgtaatttactttcct
aactgggaaaaagtagtgaaacccattgtgcgattagctagtaatcacat
gataactcatacaattcgaaaattgcactcgtgattttttgtttcgaatt
ttccgcCTCCTTTTTTTTCGACTAGTTTCGTTTTAAGGGTCCACCCCGTG
CGGGCTGGGATGAGATAACGAGAATTCCCAGAAAacgattttttcaaaac
cttcaTATGCTAANttgtttcgaattttcctcgtcctttcggactcggaa
aattaataacaaaaaaatcactcatgcaattatattcgaattgcactcgt
tatcttgtgattacatatacaaatCAAAAGGGATTCTTTGACTAATGTGT
TCTTTCTGGTGCGGCAGGATTCTCTTTAAGGAGTGCAAAAATGCTATCCT
GGACCTgttgataaaattattttttcatctttcagggGGNAGATTCTCTT
TAAGGAGTGCAAAAATGCTATCCTGGACctgttgataaaaatattttttc
atctttcagggGGTACTTGAAGAGACTGATCGTGTTATGGAAGATATGAG
AAAAGAACGCGAGATCTTAAGATCACAGGTACAATTTTGTTAGATATTCT
ACAAGATAATTTCTGTGATACAATTAATTGATAGTTTCTAGATATATcaa
ttgactttttattttggttatcGTCCCTCGTTGGgttataataatatttt
ttcatctagTGTTTGTATGACTTTATATTTGTCAGAGGAAGAAATTGATA
GATTTTACCGATTTTACATGTGATTTTTGTCATATTAAAGGCAAAGAAAG
AAGTAGAATACGTTTACTCTTTGAAATTTTATCAGGTGCAAGACATGGAA
CAACAACTTGTTCGTAAAGCAGAAGGTGACGATGACATTATGATTGCTCT
CAACAAAAAGGTTGCAGAATGGAAGGTACCACGATTTTTTGTCATGTAGA
CTGAACATAACCTAACGTAACCTCCACATTTTTGaggcaaaaaatctttt
tccagtttgaaaattgtaaacacGTTTCTTAGAAACTTTACATTTCCCAT
ATAATTCTAATATTATTCTAAAGTTTTCAGTATTAAAATCAATtctctta
taaaattgttagCAGTCATAGAATTAACACAGTCTACACAACCAAGATTA
AAACTATTTAATGAGTTTTCATTTAACACAGATATTTCCAATTTCCGTTG
AGACATGTTTAGTTATACTTGTGGAAGGTATTTTTGTATCCTTAGTTTTG
CTTTCGAATAAAAATTAATTCTTTAAAGTTGATTTCATATTTATTCTTTG
TATCCTTTAGGATATTCTAGCTGCAAAAGATGCTGATATCGAATCAAAAG
GGAAAGAATTGTTGTCACTGCAAAAACAACTTCACAGTGCAAAAATGGAT
TCGGATAGGAACACTGTTATCGAGTTAATGGAGGTAAATATTTTAATTGC
TGAAATCAACGTATTTGCCTATTATTTTCAATCACcagtttcatttttta
cctCAGCCcaaaagacttcaaaaatggtcagatttgccTGAAAATTGGCA
TACTTGTTTCTTTGGTGAATACAGGAGGCTACTTTTGTACTTTTCAAAAC
tattgttttgagaatttaGGGCAACTTGTTCACCAATGCGACAATTAGGC
TTATGCAACAGTTAGGAAAAACACTGTTTGCACGTTgactaaaaattatg
aaaaagaattGTACAAGGATTTTTATTATATTCATAATTGTCACTTCAAT
GATATTTTGATACCAGGCAAATGATAAGAAGGACGAACAAATTAAAGATT
TGAAATCAAGGCTTGACTTGGTAAGCATGATGTAAACAGTCTGTAACACC
CAATCCTAACAAAGAAATTATAGTCGCTACTAATGTACTCGTCTCACATT
GTGCCACTTACACCTTTTAAAAATGAGTTTTAAAAACTTGAATAAGCAAT
TACGCATCTTTACACATCACAATATGAGTATTTGTAAGTTTCGTTGACCT
TTAGGCTAGCAAAGACTATGACGAAGTGACTGGTCACATTAAAACATTGA
AATCACAAACAAAAGACGGTGCTCCTTCCTTgcaacaacaaagaaaaatt
caatcaCTCAATGAAACATTGCAACAGGAACAAGTGACAATTGTCAGAGA
AAGGGAACGTGTCATCGAGGTATCATTTTAATTCTTTCATAGAGCTTTTT
TTAAGGGATAATTCTGAATTCATTTGTATACTGCATAACCTCCAGGGTTG
ATAGCCTAGTCAGTAGAGCATTCGCTTTATAATTAAAGTATTGTGGGTTC
GAGCCCAGGTCAACGCCAAATCAGCGAATGGGTAAGCTCAGATTGGATAA
GTTGAGGGTAAGTGTGGTGCTCGATCTCAGCATTCGTCGACCTCTAAGGT
CAAATAGAAAAGGAGGACAAACTTCCTCACTTCCGGCTCCGCTGAAAACt
aataaagaaaatttaattttttgtatgattttgAGCTCAACTAACAATAT
TCATCACTAGGCGAGGATGAATCAGTAATTTGCATGAATCTGAAAGACGA
TTCGAAATTACGGGCATTtctcttttgttttgagtgatTCTTGTTAACTG
CAAACGACAAATATAACGATAAGTATACCATACCGAGGTAATCGTTTGTT
GTGCAAAATTGTGTTTTTTATATGGAAAAGCTTCACGTTatcaaatattt
tctctctctGCAAAAAGGTGTGATAAAGGatcaatacacgctttttttat
aagaatagtgtactttggacgagggtcaagtattcttaagaaagtgccaa
aattgagggtgaaatattttaacgtattcttacttttttagacttgactt
ttttacaaacatgagaaatgatcaatttggacttttgagtgaacatttgg
gtttataaattacatttcttcctcgaagcttcaatttatctctaacacag
gaagcagttttttctgttaaccaagtacaaaatgactgtattctgaacaa
attctgtgaaattaaccttagagggtattcttagggtattcttacgattt
ggccaattttcaccccgATATTcctatagaagatattcttataaaaaagt
gtgtattcaTTTTCTTTACTGGTTGAAGAATACAAAAGTTTAAACAGTGC
AAGCAACGATTGATTGCACTCCTCTAACCAAATAGATTTGATAAATTTGG
AACGACTGGTGATTTTAAGTATAACAACGTTATGGTGTTGAccactgaca
taattataccgggtgacccacgaaaaagttcagacgtttctcgacgtctt
gaggccgaacaaatgtacCAAAGTGCTTAgagtttagatatttagaaagt
agatatcctaacttaaaatttgagctatcacttttttaatttgaccaatt
tgttctctacttatgagcttttaaagtcaaaattcacttttcggaaagtg
taaaaaacacttaaaaaaggggtatcaaatttggtatttttagacgtttt
tgatataccgtttttgaaaaaaaatctgaaaaatctacaaaagcgccaaa
ttttataaaaactagtcttattttaaacaaaaattacttttaaaggtgtt
tttattaattattaatgtcataaaactcgttaaataagtcaatttgtaag
tgattttctaattaattgcataaatttgatacctcttttttacgtgtttt
ttacactttccgaaaagtgaattttgactttaaaagctcataagtagaga
acaagttggtcaaatttaaaaagtgatagctcaaattttaagttaggata
tctactttctaaatatcaaaactccaatcactttgggacatttgttcggc
ctcaagatgtagggaaacgtctgaactttttcgtgggtcacccggtatat
taTTCTGAAGGGTAGTTGTAAATCTTAACAAAGAGCTTCACAATTATGGC
AACTAATTGTCTATGTGTCTTCTAAGTCTATGAAGGTTTAGAATCCGATA
ACAATATTAACCATATAGAATCAGCTATTTCAAGTTTAATggcaattgat
ttttttctttagattgaGCAAGATATTGTAGAGAAGGATCGCCAAATTGC
TGAACTTGTCAACCGAATGATCCAATATGAAAAAGGACAATATGGCCTGA
CTGAAGCTGTACAAGAAATCAAAGATTGTAGAGCTCAGATACGTCTCAGA
GATAGGTATGTTCTCTTTAACAAGACAATCTTTTTAGCCACGGAGCTTCA
AAGTCAACATTGGTACAAAAGTAAATTTAAGCATGGTTGTTATGTTAGTT
AGCTGGCTATCCTGATTCAGCCTCCTAAGGAAGTTGGTTACTGTAAACCT
TTTATCAGCACTATCTAACCTcagttttgattttcaatttctttaggTGA
CTTTGTGTTCTCTGTAGTTGTCTATGTTTAAATGATATGATATTTAATcc
tttttatctaaaaaattcCAAGAAATATAGAGGATTTGACAAGAGAGATC
AACCAATTGAATCTTGACTTTGACGACGTCCATCTTGAGAATGAAGAGAT
GAGAGATCGTCTTGGTATTGGATCAAGAGATGAGTTAGATGTGGAAAATA
TTCGACGCAAACGTGCCGTGAAAGAAGAACAAGCTAGCGCCCTGAATAGA
GTCTTACAAAAAGAGGTCTGGTTTTAGTTCTTTTTATACAACCTATTTTG
AATATCTGTTTTCTTTAAGGAACTAATATTATATATAATAGTATCTTTTC
TTTACTCTGGtgtttttgataccattttatgGAAACTGCTCTTTCTTTAG
GGATTTAATCTAATTACATGGTTGAAAATAAGTGAATTAGTCAATTATTT
AAAGTAGTAAAACTTTCAATTGGTTATGGTAACTGTTATCTCTCCAGAAA
TCAAAACACCATTGTTGCAACCGCGCATAATATCTTTTTTCTACCGTGTC
TTGATAGGTTGAGCGGCTTGAAGAAGAGCGTTTAGTGTTGAAAAAGGCGT
TGAGAAAACATGCTTTGGACAGGGGTGAACGGTATATAGTTCGATTTTTC
CTTTAATTGGCTTTAATCATCACTACATTACAAACTATCTATCGATCTTA
CTAGTAATAAGGGAGAATTTGAAGACGATTTTCTGTTTTTATGGTGCACA
GAGCATGCttcaaaaaaggttaaaaaaagtcatttgagTTTCATTTACAA
TCATTATAagcctttttttttcttttttttttccagtgCTGTTGAACTTG
GTTTGTCAGCATTAGACATGGAGCCTCTAGATGAAGAAGTAGTCTTATCA
CCTTCCAAAAGCAAAATCATCAAAGTTATTCAACAGCCTGACCCAGTTCC
GCAACGTGTAAGGGCAGAAAAttattgtttattttctaaGTATTATCCCA
TTATTTTATAACCGTGCATATGGTCATCAATTCAAGCTGGAAGTGTTGCT
ATTAAGTTCTGTAGATTTTAAGTATACTTACTTTGTTTTACTTGCGCCCT
CTTTGATAATATTCGTTTAGGAAAATGTTTCTTCAAATATACCAACTCAA
GATTCGGAGGTCCTCGTGCTACAAAAAAtgcaatttgaaaaagaaaacac
ggTTTGTATAAGATTTCCTTGTTTCACCAGTTTGTGTCGCTTACGATAGA
TTTTTGTCTCGGTTATTTTTATTAAGAGTGTTTAAAAGATTCTTTGTCTG
TTTTGGTGCAAGCTATAACTGTTGGcgatctctctaattcgaacgaaaaa
TATCTCTTTAATACGATCTTCATGGGACCAAGAAATTTTTTCTAATGCGA
AGAGAACCActatttttgttcgaattacagaaagaggCTGTAAAATTGTT
CAGGTTATTGagtaaagttttttgaaaaaatctattAGTATTCGAAtcgt
tgaaaaattgaaacaattagTTGCTCCAATTAAATATAATCTGCTGTACC
CTCTTTTCTTATCTTAGCAATTGAAAGATGAAAATCGTCAACTTGAATTG
GCGTTGAGAGAATTGAAAGGTGCAATGGATTCAGGTATGGTGAAGTATTA
TAACCTttaggaaaaaattttttaacaacCTGCACCAACAACCTGATTTC
AACAATAGTTTTAGATTATAAACTATAATGTTAACGGGGAAGCTAAAGCG
GCAAAAGTATAATTTACTctaggctgcgcgcatccccaaaattgattttg
atatagatGATGCATATATTATTtaactcaaaaacacaaagacttGGTTA
ACTCTCGGACGAACAATTTATACATGATGGCGCACCATCTTATCAAAACA
TCAGAGGGGCAGTGAGTAGCCTAATTAAACACAGATTCCTAatttaaact
tttatttttttcaggtgACAAAGACATCAACTCACCATCATTAGATAAAC
TTGTTGCGGTAATGGATGTTATTGatattttaataattaatttctTTGAC
CATTGATGTTCACATTCTGATTCTGATGACACTAAAACNAGACATCAACT
CACCCTCATTAGATAAACTTGTTGCGGTAATGGATATTATATTATTGCTA
TTTAATAATTACTTTATTTGACCATTGCTGTTCACATTCTGATTCTGATG
ATACTAAAAATCATTTcagtttctaaattttttgttaCAGATGATCGAAG
AAAAACACGCTACTGGTCAGTATGACACAACAGTACATCTCAAATCACAG
GTATCATCAATGAAAATAGCAAATTTAAAACTATTGTTAGCTACACTGTC
TTTTCGAGGTAGGGTACGGTATATATTGGGTCATACCGTATTGCTGTCGA
GGCTTGCCGAGTTGTTTATCTACTTGGTTTGTGTTTTCAAATCTAGTTTT
TATTAACTGTGAATAATTTAAGGTTTTTAGACTGCACGTgttattttgga
ttttttctcaatctttcaaatatttttattcagATTCAACATCTGTCTGG
AAGGAATGAAGAATTGAGGCTTGAGTTACGTAGTGCACAGCtcgaaataa
acaaaacaatatcGGAACTAGATGCCAGAGctcagaatgtaggtttgggt
GTTTAATATTAAATCTCTATGTAAGATCTTAATGACCTTTTGCAATTCTG
TAAAACAGAGGTTTAATGAGGATTAATTCTACCAGGGTCGAATGGTGTTC
AATACTGAAGCTATTGAATTGGTGGTGATCAAAATATGTCGACTTTTCCC
AAAGCAGATTCGAGCCTATGGCTCTTGTATAATCTGCGGGGCTTGTATAC
GTGTATTGCTTTATAATAAATGATGGTCCTTTTTGTAAAAGGCTTTTAAA
AAGCATTGTAGTAAGTCGTGGAATGAAACGTAGGCCATTACCACGATCTG
ATTGTGACCATGTTAATcaccaagattttttttttcattttcagattgaa
aatttggaaaaggaAAATGGTGCTTTACGTGAGATAAGTACGGGAAATAA
TTCACCATTCATTAGTTGCTACTACAAAATTATCTTCATTAGATTTTCTT
CATTAAAATAGACCCTTTCTTAAAGCTCATCCTATAGTTGACTCGCTCCA
ATTACTGAAAGATTCGACTCACATAGCTGTTCAAATTAGAGAGTTGATTG
TACGTTCAAAGTCATCATGACCCCCCAATATTTTACAAAGTAATGTTTTT
TACTTTAAAGAATCTTATATATAtatagaggggtgaaataagggtgaaaa
gttgaaacttttcttcgttttttcggccccctcaattcgattaGCATGCC
TGGGGCCATGGTCATCAACATACACACGTTCTTTAATGCCAATATATCTC
TAATACATTTTGACCTACTCCCCTCAATGCCAGTCTCTTTTTTTGAGTCC
ACGTTGTTTTNTATCTCTAATACATTTTGACCTAGTCCCCTCAATGCCAG
TCTCTTTTTTGAGTCCACGTTGTTTCCAGTCGTCTTCATCTTTATCATAT
AACTTAATCTTTTAATTGTAATAGTTTCTCCCTTCTCTCTATTAGGTCAA
GGTATCATCAAATTGAATCCATTGCCCTTACCCGAAGGCATCAAACCAAC
TTCTAAAGATATAATTGCGTGCTTGAACGAGTACATCATTCAAATCTTAC
AGGTACTTTTTGATAAACGTCAATTGTATAACGAATTCTTTTTTATCCAT
GCGTTTTGATCACGAAATTCTCGTCAGAGAGTGGTTAATAAAATTGGGGA
AGTCGTTGCAGTGGAACTAGATGTGACGCCACCCTGTTAAACCATTACAG
ATTGTCTATCGGTATTGATCACTTGACAAAAATATAACGAAACCCAACCT
ATTTGCTAGCGTTTCCCTAACTGGATAGATATTCAATTGACCTTGCTTTC
TGTGACGTTCCTTTACAGGGTCACTATTCATAGGCGTCAATACTATTAGA
GATAAAgtctatgaaaaattgaaccGCCCGATGGTTACATTGTGATACTA
TTTCAAAATTAGTGCGACGAGACCGATGTATTAAGTAATAAATAGAataa
caatgattttataaagcataaatacactcttctcgagatgcataaattta
ttgttgtcctcgttttcaaacagatttccatgctataaaattatacattt
aaaccaatttaaatccccaaaaggcaaacattattctaaaacaaaagtac
ttgaaattcaaaatgtctcatgaggtgtaaacaacccaattatcattgtg
aatatgtaattttatagcaatgaaatctgtttgaaaacgaggacaacaat
agaTTTATGCATCTCGATAAGAGTGTATTGTATCGAAATCGAGAAAAAGG
GAcgagaaaatttcattttcaaccaAAACCGTGGAATACACCttgtaaat
aaagtttttttgcgtttttacaACTTGAAATTAACAGTTGTCAGCCAAAA
AGGGAAGAAATACTTgcgtgctcgcttcgctcgcgtcattttttacaaac
gtattttacttttaaaaggGGCGCAAAACATCCCAGCATTCGAAAATTGC
ATCCCCAGCTTTGTTTGACTCACCACCACGCTACTGCGTGAGTCATATGT
TTGTGATTTGATTAAACTTCAGAATCCTTCCCAATTTGTGATTCACGACT
ATTATGTAGTACAAATTCGTCAataattttaattcatttttttacaAGGA
AATATCAAACAAAGAGACGTTATGCTCAGAAATGGAATCAGCTTTGGAAG
ACATGCGCCGTAAATATTCCGTCGCATTGCATCAACAGGTTTGATATCCA
ATTTTAAGCcatgcatttttttaaatggctaCTACAGTGGCCAGGTTTAC
TGTGGCATATACCGTCCTTGATTTGGCAGGTCAGAGCTGTGATTTAttcc
aaatcgtttcagtcactccgccgtcctcaaaagtgcaaatacaaaCTCGC
TGTTATTTCAAGACAGTACGTTTTAGGACACCTCTGACCTGTAAAATCAA
GGAccgtaaaagtgctgattttccTTCGTCTCGATTTGGTCAAGATCTAA
ACAGATTAGAAGCtttccgtctccgtcgcagaaaaacactcatacataaa
cttgctaatGCATAAAGGAGACGAAAGCACTAAACATAACGACTTTTTGA
ATGACTCATCTATTCAGAGTATTGTGTACAAAGAGCACTTAGCGGTGAAA
gtggaaaaagaagaagaatcgaAGAAATACGCAGACGAAAAAGAAGAGTT
GCTACTGAAGAAAAGTCAAACTGACGTTCGCTTGCAAGAAttcgacgtga
gttgaacatgCATGGTTTTATAATTATTTAGCTTTAAAATTCAGTTAACA
TTACGTTCATTATCTTATCGGAGACAACCGAAAAAGCAGGAATAATTCTC
ATTTTTTGCAATTTATAGTAACAAACGGGGCATAATTCGGGGTTTTATTT
TCAGGTGTTTCCCATAGTAAAAGTGATGTAATCTCACTTAAGCATATATC
AAGAATTACCGTTGCCTCCATTTaggctatgaaaaaaaaatagcttTGAA
AAAGATGCGTTCAGTGAGCGAAAAAAGATTCTGTATTAATTCGATTTATA
TCTCCTTTTCCTTTATTTTCATAGCGCTTACTAGACAACCTCAGTACTGA
GCCTGGCCAACACAAAAAAATGCTGACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034388	XLOC_034388	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_243	supercontig	scaffold_243:566124..580501 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.76376e-07	0	0	0	0	0	0	0	4.87431e-07	0	0.209923	0	3.16792e-06	0.810175	0.000554623	0.404773	0	0	2.7012e-06	0.242569	0.179516	0	0	0	0	0.102826	0.0964043

Blast

[Close]

BLAST of TCONS_00054543 vs. Swiss-Prot (Human)
Match: CE290 (Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 4.165e-100
Identity = 292/891 (32.77%), Postives = 506/891 (56.79%), Query Frame = 1

Query:   76 IDWQRIQTADVERISLDEDAAEEYFXXXXXXXXXXXXGKLSEADTVVKLFNVTKAVLNIKGIQYETAVDEMERLMAEKDGGRDGE---AVLMAENQELKAEIAQYQKYSGTGDKYLRGEIQQLTERIKMLTEELNE----------ADRRLMKEQESFDRLTKDLKDKDQRYHDTKRQLERMQDDVKEYQRQFQSQRDSMIMRRSNADDVRDQMKEKNRELSRNLDEISELQKANDRLQEEVKNATKEMESATKDMNEMADDYSKLKGVLEETDRVMEDMRKEREILRSQVQDMEQQLVRKAEGDDDIMIALNKKVAEWKDILAAKDADIESKGKELLSLQKQLHSAKMDSDRNTVIELMEANDKKDEQIKDLKSRLDLASKDYDEVTGHIKTLKS--QTKDGAPSLQQQR--KIQSLNETLXXXXXXXXXXXXXXXXXXXXXXXKDRQIAELVNRMIQYEKGQYGLTEAVQEIKDCRAQIRLRDRNIEDLTREINQLNLDFDDVHLENEEMRDRLGIGSRDELDVENIRRKRAVKEEQASALNXXXXXXXXXXXXXXXXXXXXXXXHALDRGERAVELGLSALDM---EPLDEEVVLSPSKSKIIKVIQQPDPVPQRENVSSNIPTQDSEV----LVLQKMQFEKENTQLKDENRQLELALRELKGAM---------DSGDKDINSPSLDKLVAMIEEKHATGQYDTTVHLKSQIQHLSGRNEELRLELRSAQLEINKTISELDARAQNIENLEKENGALREISQGIIKLNPLPLPEGIKPTSKDIIACLNEYIIQILQEISNKETLCSEMESALEDMRRKYSVALHQQSIVYKEHLAXXXXXXXXXXXYADEKEELLLKKSQTDVRLQEFDRLLDNLSTEPGQHKKMLT 2649
            I+W+ I   D + +   E+ A+     L   +++E   K  + + V+ LF +T++++ +K  Q      E      E+    + +    V+  EN+    E+AQ Q   G   ++LR EI QL ++++    EL +           + +L    E  +     L+ +++R    K++ E++  D+ +YQ+Q  SQ+++++ RR    D R Q+ +KN EL + LDEI  L +AN++++ + +   K +E + ++M +M D+Y+++K ++ +TD V++ ++KE +  + QVQ++   L  K E DD IM+A+N KV EWK IL++KD +I    + L +L+++L +A++D+D++ V+ L +   ++D QIK L  +++  +K+ ++ T  I+ LK+  Q   GA +L QQ   KIQS   TL   +             E D  EKD+++ E + R+  YE G YGL +AV EIK+C+ QI++RDR IE LT+EIN+L L   D   ENE +R+R+G+  +  +D+   R  + +K++Q  A N++L KE+E LEEERL LKK +R+ A +RG+R+   GL+  D+   E + +   +S  K  ++ +    +   + E +S  +  ++ ++     V+ K  F+ +  +L +EN+QLE  ++E+  A+           G+  +  PSL++LV  IE K+A G +D ++HLK+Q+  L+GRNEELR ELR ++ E      +L      I++LEKE   LR+     +    + LP+GI P+S  II   NEY+I +LQE+ NKE     +E +LED  RK++V  HQQS++YKE+L+ K   + ESK   +EK +L  +  Q  ++++E++ LL+ L  +  + KK+L 
Sbjct:    5 INWKEIMKVDPDDLPRQEELADNLLISLSKVEVNEL--KSEKQENVIHLFRITQSLMKMKA-QEVELALEEVEKAGEEQAKFENQLKTKVMKLENE---LEMAQ-QSAGGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRL---KKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQS---TLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAK--FQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILA 880

The following BLAST results are available for this feature:

BLAST of TCONS_00054543 vs. Swiss-Prot (Human)

BLAST of TCONS_00054543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CE290	4.165e-100	32.77	Centrosomal protein of 290 kDa OS=Homo sapiens GN=...	[more]

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TCONS_00054543 (transcript) - C. hemisphaerica