TCONS_00054539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054539
Unique NameTCONS_00054539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054539 ID=TCONS_00054539|Name=TCONS_00054539|organism=Clytia hemisphaerica|type=transcript|length=351bp
CACGCacatcaaagatggcggcaacagattttgttgattgccgacttgat
tcttCGGGATTTACTAGATAAACCTAAAACTCCCCCAACACCGGCTACAT
TAAAAAGGCTGTTGACAAACCACACACTGGCACGAAAAAACGTGGTTGGA
TTTACTTGGAAAATATTCGAAACATATATGAATGAATCAAAGTTGATTCA
TAATAAAGAGAAATAACAGAAAGGCTGTGTGGTATATaaacttggaaaaa
atggactttgGCTTGGAGTCTAATGCTATTGAACAAGATATTATATCTGA
TATGAAACAATATTTTCCTCCTGATACACCAGAAGAGGATATTCTTGGTA
A
Run BLAST on NCBI

transcript from alignment at scaffold_243:536178..537010+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054539 ID=TCONS_00054539|Name=TCONS_00054539|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at scaffold_243:536178..537010+ (Clytia hemisphaerica)
CACGCacatcaaagatggcggcaacagattttgttgattgccgacttgat
tcttCGGGATTTACTAGATAAACCTAAAACTCCCCCAACACCGGCTACAT
TAAAAAGGCTGTTGACAAACCACACACTGGCACGAAAAAACGTGGTTGGA
TTTACTTGGAAAATATTCGAAACATATATGCAAGTTTACGCAAAGATTTT
AAAGCCatcaaagcatcttataaagaaatattatactcattagaacaata
aaagatgaagCTTTTGTGAAGAATTAattacaaaacaacaaaagcctttt
agaagtATCTTGTGGATTTAAGGACTTACTTAAATAATAAAAGGAAGTCG
ATTTTGGTCATATTTTGTTTCAAGTTATACCTTTAGATATAGTAAGTGTA
ATGAAATTATTCTATTGTATTTctcaatgaaaatttgaatgcTCTCTTGG
GAAAGGAACATTATTCTTTTAAATATTGGtcacattttttataaagatga
taaaaatgtaatatAATGACCAAAATATTGCACATAGTGGGTTATTTGCC
ATACCAAATggtgtttttaattgtttttctttttttctcttttgcaagct
tagaattttaaaaaaccttttttttttctagaGGAATGAATCAAAGTTGA
TTCATAATAAGGAATGAATCAAAGTTGATTCATAATAAAGAGAAATAACA
GAAAGGCTGTGTGGTATATaaacttggaaaaaatggactttgGCTTGGAG
TCTAATGCTATTGAACAAGATATTATATCTGATATGAAACAATATTTTCC
TCCTGATACACCAGAAGAGGATATTCTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034386XLOC_034386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054539-exon-scaffold_243-1491911889:536178..536356TCONS_00054539-exon-scaffold_243-1491911889:536178..536356Clytia hemisphaericaexon
TCONS_00054539-exon-scaffold_243-1510915933:536178..536356TCONS_00054539-exon-scaffold_243-1510915933:536178..536356Clytia hemisphaericaexon
TCONS_00054539-exon-scaffold_243-1575043694:536178..536356TCONS_00054539-exon-scaffold_243-1575043694:536178..536356Clytia hemisphaericaexon
TCONS_00054539-exon-scaffold_243-1491911889:536839..537010TCONS_00054539-exon-scaffold_243-1491911889:536839..537010Clytia hemisphaericaexon
TCONS_00054539-exon-scaffold_243-1510915933:536839..537010TCONS_00054539-exon-scaffold_243-1510915933:536839..537010Clytia hemisphaericaexon
TCONS_00054539-exon-scaffold_243-1575043694:536839..537010TCONS_00054539-exon-scaffold_243-1575043694:536839..537010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:536178..537010 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49906	0.829704	0.357684	1.16497	0	0	0.770791	0	1.86672	0	4.13432	0.000767737	0	2.08222	1.27682	1.21798	3.37601	2.11463	0.265589	1.11168	1.30157	1.41391	0.57293	1.30219	0	0	0.685169	0.73123	2.77306	1.29924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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