TCONS_00054536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054536
Unique NameTCONS_00054536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054536 ID=TCONS_00054536|Name=TCONS_00054536|organism=Clytia hemisphaerica|type=transcript|length=1507bp
CACCACCAGCAATTCCATCACCTCCTTCTCCTCCACTCATCTCAACCGGT
GTCAATACTGGTCGTAGTTTATTATGGCCAACCGAAAACCTGGCAATCAC
TCAATCAGATACTTCATTACGAGGAACGCAACAAGCTGTTTTACCCAACT
CTTCCACCAAACCAGCACACGATGTGAAAAGGTTGagtaacaacaacaac
aacaagccGTGTCCTTGCTGTCGGAATCACTTTGAAAAAATGTCCCATCC
TTCTTACAGTGACCACAAATTACCAgcaccaccaactccaccacaTAGAA
GCACAACAACAGCACCAATGGCTGTTCCGGACGATTCATCTTTCCACGAT
GATACGCAAACAAGTAGTGTATCTGATCTTCAAACTGTAGATATTCCGTC
AATCAATAACACTACTGATACGTCACAAAGCATTACGTCAACATTGAGCA
AAGTAGACATGCCAGTATTTGAAGAGAACAGCCAACAAGAGACACCAACC
AAAAATAATAGAATGGCTGATTTGACGAACGAATGGGAGCGAAGCCCACA
ACTAGGTGAAAGTGCGAGTATGTTGGTGGAGAAACGACGTCGAGAAGAAC
AACAACACGAAGATGAGGATACAGTGGTGGAAGAAAACTTGTTGAATAAC
AAACAGTTCTATCAACAAATGATGAATCAAGTTCAAAAGCTGATCATTGC
ACAGAGTGATGAGAATGATCATGTTAGCCACCGACAATCCGACGATGAAA
ATCCTTTACCGATTCCTGCACCAAAACCTTTATCTCCTGAAGAAAAGTTG
GAACACATCAGAAGTACTACCGtcaaagaattacaaaaaatgaTACCTCA
AGATTTATTGCAACAACATCAACCGGTGGTTGGACAAATGCAGCCTAACG
ATCGACAACGATCAATGTCGGCGGCCATCAATTCCTACCCGAAAATTAAT
TACACGTCAATGTCCTCTGTCGACGACACCTTTTACGATTACGCAACCTC
TACGATCGACAAAATCGCTTCAAAATATGTTTCCCAAGAGATATTTCACC
AACAACAGGAAATAACTAAAAATAAGACTGTTAAATTCGAAGGAGTCTAT
GAATGGCAAACTTCCAACCGAAATGGAATTACCAATAAAAATATGGCTAG
TGTCAACTTCTCGTGCAATATGTCAATAGCCTCTAAGAAATATCTACAGA
AATATAGCCTAGAGGCTAGTGACGATGATAAGAGGAAACCGTTTCAGGAA
GGAAATGGTAGACCAGCTATGATTAGATCACGTGATGGTAACCAAGAGAA
CGAGGAAAACAATGGTAAAGAGAATAAAGTTCTGGActataaaaaattac
aaagtttaccaaaattgaaataaatatactagaaaaaatattttttttac
attgaatttaaaaaaaagttttgttaacATTTTATAACTGAAAACTGTAA
AAATTTGCTATACAGCATTTGGTTTAAAAGAAGCTGAATAAGCctacttt
ctttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_243:419234..424127+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054536 ID=TCONS_00054536|Name=TCONS_00054536|organism=Clytia hemisphaerica|type=transcript|length=4894bp|location=Sequence derived from alignment at scaffold_243:419234..424127+ (Clytia hemisphaerica)
CACCACCAGCAATTCCATCACCTCCTTCTCCTCCACTCATCTCAACCGGT
ATGTCACAATTTGATTCATGTCCCTAATTTGAGGTTGATGATTTATAGTA
AAATCTTAACTAATATTTACACCTACAAATTATCCTCTTTTCCTGCCTGG
TACAATAAGCACCAATGTaccaaattctatcaaaaggtCTCCCAGCGAGG
GCTGAAACTGTGGTAAACCTTTATAAACCTTGTCTATTAAATCCCTATTA
AGGGATTTACTTTAATACTCAAAGTTCAACAAGAAAAATATCATTACACT
TAATTCGAAGCCTTAGCTACACTAAATTTATGGTAAAACCATTTGTAGGT
GTATTTCAAGCTATCAATTATGTTTTGACGAACTATTTTCTCCCTTTAGG
TGTCAATACTGGTCGTAGTTTATTATGGCCAACCGAAAACCTGGCAATCA
CTCAATCAGATACTTCATTACGAGGAACGCAACAAGCTGTTTTACCCAAC
TCTTCCACCAAACCAGCACACGATGTGAAAAGGTTGagtaacaacaacaa
caacaagccGTGTCCTTGCTGTCGGAATCACTTTGAAAAGTAAGTAAACA
TTTTGAGTTAAAGCTTCTGATGTAATTTGGATTTTGTTAAGAGTCGCCAT
AACTCGAACCctcacggggaacacaaatttgttcgaattaaagaaatttc
aagttatggagtaatgtttataaggcattgttcaccctccttgaAACTTG
TTGAAGAGACCCAATTGTATAGAAAGTGATCAGGGTGAAAGAGATCCGTC
TCTTAGGATAAAGTTCTCATTACCAGCAGCAACTTCTGCGCGGTCACGCG
ACAAAATCTGATTATAAAACAAAATACTGCCCGTCGGAACTGGGGCGGTC
TAGGCTACCAATTAGCTTTTGTTATTAGCTTTTGTTCAAAAGATTTATTG
TACATTGAAgatgtttctttttgttttcataataatGTCACATGCTTCTT
TTTGCTTTCAGAATGTCCCATCCTTCTTACAGTGACCACAAATTACCAgc
accaccaactccaccacaTAGAAGCACAACAACAGCACCAATGGCTGTTC
CGGACGATTCATCTTTCCACGATGATACGCAAACAAGTAGTGTATCTGAT
CTTCAAACTGTAGATATTCCGTCAATCAATAACACTACTGATACGTCACA
AAGCATTACGTCAACATTGAGCAAAGTAGACATGCCAGTATTTGAAGAGA
ACAGCCAACAAGAGACACCAACCAAAAATAATAGAATGGCTGATTTGACG
AACGAATGGGAGCGAAGCCCACAACTAGGTTTGTTGAAACGTTTAGGCTC
CTGTTTTTTGTGGAACTAACGAAAGCTTAGTATAAACATGGTTAATTCTC
TATGTGAATAATTAGAAGTCACTTTCCTCAGTAAGAATACTATGAGTAGT
ATGTAATTTACTACAATTTAAACATATTAGCTCAAGTTTAGACGAGCAAC
TTTCTACCCTGCTTCTTCCAACCGTCAGAATAGGCAAAGTGGGCAGAAAG
TTTGCAGTTTaataaatctttgcttggaaaagattaAAGAATCATCTCTA
CATTTACGTCAAAAGAAGGCAACGTATTGACTTAAGACAGCTAACATTCG
GCCCAATTTAATTCACAATAACATAAAATAGTCAAAAAGTAGACCGTCTA
AACCAGAACTTACATAAATGTCTCGCACAGTCTTCGCTGCAGTTGTTTTA
CTTGAGTAAATATCAGAATCAAATCACGAATAGACTTTGAAGTGACCGAT
ACCATGTTTCACTCTAGTTGGTTATAGCGAGTTAATGTTTTTCTGTGACG
AAGAAGGCTAGCTTTGGATTTGTCTAGTTCCTGATCGACTAAGAAAGACG
GTAGATCAGCATTTTTAACGTCCTCCATTTGGCGGGTCAAAAGTGCGGGT
TTTTCTTAATCACCTTGGTCCCTCCGCCGTCctcaaaaagtgcaaataca
taactTTGATACTATCTTTCCTCATTTATATATTCATTTCCTTTTTGTCA
GGTGAAAGTGCGAGTATGTTGGTGGAGAAACGACGTCGAGAAGAACAACA
ACACGAAGATGAGGATACAGTGGTGGAAGAAAACTTGTTGAATAACAAAC
AGTTCTATCAACAAATGATGGTAAGAACTTCTagctaaccccccccccct
taagatTAAAAATATTCCCTTGAACTATTGTACACTTTATTAATGATTAC
ATTGACTTTAATGTTGTGATTTTAACTTGCCATGCTAAATTTGAAACAAG
AAGGCAACATTTCATAAAAGTTTTCACCCATCAATTACAAATTCATCTGT
GTTTCAGAATCAAGTTCAAAAGCTGATCATTGCACAGAGTGATGAGAATG
ATCATGTTAGCCACCGACAATCCGACGATGAAAATCCTTTACCGATTCCT
GCACCAAAACCTTTATCTCCTGAAGAAAAGTTGGAACACATCAGAAGTAC
TACCGtcaaagaattacaaaaaatgaTACCTCAAGATTTATTGCAGTAag
tttaaaagatatttttttacgataaattaaaagatatttttttacgATAT
AGAAAATTTGTGCACGTGTGGGGGAGaaagttgttctttcttttgtttaa
atagTGGgttcgtttagcataatttacgggaaaacaatatgatctagctg
aaactttctccagaccttctctatagggtgcttatacctcaggaaaaatt
cccctaaaatccaactggtggaacatcccttttttgggacatttctattt
tccccaggcaaagtcctaagggcgaaattttttgaaaatttcaaacttat
ttccagacaatatcatgtataccattcgacagctctcgaaaaactatata
gaagacttttaaacggttatagaTTTCCTttcctaactcgagatatttca
tgcgcaagttccacttttcgccacactttggtcaaaattgaccataaata
gcatcttctgtgtgaattatcttgagttaggtaatgaaatcggctatacc
cgtttaaaagtcttctatatagtttttcgagagctttcgaatggtatact
tgataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtataagcatcc
tatagagaaggtctggagaaagtttcagctagatcttatttttttcctac
aaacagcctgtatttttgtaacacgaccacactaaaaATGTTGTCAAAGC
AATAATGGTAGAAGATACGTTAAGTTATGTCATTTAAGAGTTTGTTTACA
ACTGAATTCAGAAAATGTTAACCTTCCTAGCTTTTGATTAATATCAGTTC
AAAAAATCAAGACTCACTCACAAGAGACCTATGTATCGATAACAACATGA
TAACAATCGATGCTACTGTCTTTAAAACTATTTATAAAGATTTCACCATC
GTAACATGTTTCATAATTTTAactaaaactaattttattcaaTTTGTAGA
CAACATCAACCGGTGGTTGGACAAATGCAGCCTAACGATCGACAACGATC
AATGTCGGCGGCCATCAATTCCTACCCGAAAATTAATTACACGTCAATGT
CCTCTGTCGACGACACCTTTTACGATTACGCAACCTCTACGATCGACAAA
ATCGCTTCAAAATATGTTTCCCAAGAGATATTTCACCAACAACAGGAAAT
AACTAAAAATAAGACTGTTAAATTCGAAGGAGTCTATGAATGGCAAACTT
CCAACCGAAATGGAATTACCAATAAAAATATGGCTAGTGTCAACTTCTCG
TGCAATATGTCAATAGCCTCTAAGAAATATCTACAGAAATATAGCCTAGA
GGCTAGTGACGATGATAAGAGGAAACCGTTTCAGGAAGGAAATGGTAGAC
CAGCTATGATTAGATCACGTGATGGTAACCAAGAGAACGAGGAAAACAAT
GGTAAAGAGAATAAAGTTCTGGActataaaaaattacaaagtttaccaaa
attgaaataaatatactagaaaaaatattttttttacattgaatttaaaa
aaaagttttgttaacATTTTATAACTGAAAACTGTAAAAATTTGCTATAC
AGCATTTGGTTTAAAAGAAGCTGAATAAGCctactttctttgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034383XLOC_034383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054536-exon-scaffold_243-1491911889:419234..419281TCONS_00054536-exon-scaffold_243-1491911889:419234..419281Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:419234..419281TCONS_00054536-exon-scaffold_243-1510915933:419234..419281Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:419234..419281TCONS_00054536-exon-scaffold_243-1575043694:419234..419281Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1491911889:419633..419822TCONS_00054536-exon-scaffold_243-1491911889:419633..419822Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:419633..419822TCONS_00054536-exon-scaffold_243-1510915933:419633..419822Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:419633..419822TCONS_00054536-exon-scaffold_243-1575043694:419633..419822Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1491911889:420245..420561TCONS_00054536-exon-scaffold_243-1491911889:420245..420561Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:420245..420561TCONS_00054536-exon-scaffold_243-1510915933:420245..420561Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:420245..420561TCONS_00054536-exon-scaffold_243-1575043694:420245..420561Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1491911889:421285..421403TCONS_00054536-exon-scaffold_243-1491911889:421285..421403Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:421285..421403TCONS_00054536-exon-scaffold_243-1510915933:421285..421403Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:421285..421403TCONS_00054536-exon-scaffold_243-1575043694:421285..421403Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1491911889:421591..421778TCONS_00054536-exon-scaffold_243-1491911889:421591..421778Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:421591..421778TCONS_00054536-exon-scaffold_243-1510915933:421591..421778Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:421591..421778TCONS_00054536-exon-scaffold_243-1575043694:421591..421778Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1491911889:423483..424127TCONS_00054536-exon-scaffold_243-1491911889:423483..424127Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1510915933:423483..424127TCONS_00054536-exon-scaffold_243-1510915933:423483..424127Clytia hemisphaericaexon
TCONS_00054536-exon-scaffold_243-1575043694:423483..424127TCONS_00054536-exon-scaffold_243-1575043694:423483..424127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:419234..424127 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.68912	6.88573	2.64881	3.57882	1.44098	1.04251	0.767057	0.567849	1.44268	1.14368	0	2.84598	1.37683	0.587002	0.334621	1.33379	2.13707	0.960693	1.29626	0.994288	0.513744	0.572285	8.69502	4.11573	0.0084202	2.82395	4.58556	3.89155	3.14466	3.36936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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