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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054529 ID=TCONS_00054529|Name=TCONS_00054529|organism=Clytia hemisphaerica|type=transcript|length=5440bpRun BLAST on NCBI protein sequence of TCONS_00054529-protein >TCONS_00054529-protein ID=TCONS_00054529-protein|Name=TCONS_00054529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1162bp MDHLDLALNLQQEAVYSSSNTNNDEGGGEMSDRVSTLASGIYAEFERMIQRun BLAST on NCBI transcript from alignment at scaffold_243:332384..354314+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054529 ID=TCONS_00054529|Name=TCONS_00054529|organism=Clytia hemisphaerica|type=transcript|length=21931bp|location=Sequence derived from alignment at scaffold_243:332384..354314+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:332384..354314+ >TCONS_00054529 ID=TCONS_00054529|Name=TCONS_00054529|organism=Clytia hemisphaerica|type=CDS|length=83736bp|location=Sequence derived from alignment at scaffold_243:332384..354314+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054529 vs. Swiss-Prot (Human)
Match: JIP4 (C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens GN=SPAG9 PE=1 SV=4) HSP 1 Score: 484.182 bits (1245), Expect = 4.003e-144 Identity = 222/375 (59.20%), Postives = 273/375 (72.80%), Query Frame = 3
Query: 2754 PDEDSVDGSQPTKVTSMLPTMWLGAQSGKVYIHSVVANWKKCLQSAKLKDSLLSIVHTQGRVLAALADGTVAIFHRKPDGRWDLSNYHLLDLGRPHHSIRCMTTVHHLVWCGYRNKVQVINPRTMKIEKSFDAHPRRESQVRQLACIGDGVWVSIRLDSTLRLYNAHTYHHLQDVDIEPYVSKMLGTSKFGFSFVRITALLLTDDRLWVGTGNGIILSVPLVSARPTR--------------ENDNGKAVVPIDIPNKGALFMPYCAMVHAQLSFHGHRDSVKFFIAVPGSAANIEAAKAYSNAGARPPSPSNVKPG-EVNFANLLVMSGGEGYIDFRVGDDESEDKANMSSSETSPASSKLVAVERSHLLVWQI 3833
P+E + + K++S+LPTMWLGAQ+G +Y+HS VA W+KCL S KLKDS+LSIVH +G VL ALADGT+AIFHR DG+WDLSNYHLLDLGRPHHSIRCMT VH VWCGYRNK+ V+ P+ MKIEKSFDAHPR+ESQVRQLA +GDGVWVSIRLDSTLRLY+AHTY HLQDVDIEPYVSKMLGT K GFSFVRITAL+++ +RLWVGTGNG+I+S+PL T ++N V P F+PYC+M HAQL FHGHRD+VKFF+AVPG + +++ + ++ PS +PG + ++LV+SGGEGYIDFR+GD+ E + E P + ERSHL+VWQ+
Sbjct: 952 PNEQDLVREEAQKMSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWVGTGNGVIISIPLTETNKTSGVPGNRPGSVIRVYGDENSDKVTP-------GTFIPYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSSSSGTDLTGDKAGPSAQEPGSQTPLKSMLVISGGEGYIDFRMGDEGGESEL---LGEDLPLEPSVTKAERSHLIVWQV 1316 HSP 2 Score: 416.772 bits (1070), Expect = 5.033e-121 Identity = 312/851 (36.66%), Postives = 458/851 (53.82%), Query Frame = 3
Query: 444 GGEMSDRVSTLASGIYAEFERMIQKYGSDVVENLMPMIVNVLEQLESSYSEGGEATMELEMLAEDNEQLITQYEREKQLRKLAEAKYLEYEDSREQHQQDLQSVIDQLEHSRRQSETKAKQLQDQVERYEERISEQKKEYDTLHNRHSEMLHKYMERME------------LQSK--------------LSPLPS-----TPDNVKLRKTKQGSEL-----LSA--SQTELGASNTDENNLRSSSVTEI----QVTSDFLTPGESRNDLSFEDEISLQVTTQDASTPLKTKKKLLASSREFLDTIEAESSQAEKLNVTSSERGGVDFNEDDMNTVSEKTDSASMFISPEAKAILDATPELSQVESKFNELEISEYQ---TPTIDIRSA----------QKLNQQNISLLAEMEQYDDALTVEQQGLKEFDRLLVENKDLIDVRSKLQTQKNELIRRMEEISGDREIQEEEIKALQTTKTRMKLKMTELEQSLKKVRLENEKAQLTLKNKIAEERISSANRKRFTRVEMAKVLMERNQYKERLMELQEAVRWTEMIRASKENHLNAVQQKKKSSIWRLFSNLFXXXXXXXXXXXXPKKSAASTPQEPINVWYGGGAXXXXXXXXXRRHTLSAQPSRYSGAESGFEGMTEK-------QRQERKERYKYVKEHINSE-GRKQAYGWSLPSDFSGEQVGSS-----IVPVPVYCRPLN-TEAAMKIWCASGINLEGGRTPD-GNFIGLPMDFK-------------------------------------ESCHSTVWIGTSTHSCSKVTIIDANNPSVALDQFIVSSSHLLCMASVPGLSKDDNKRDPDVVDS 2675
G MS+RVS LA IY EFER+I +Y +VV+ LMP++V VLE L+S +++ E +ELE+L +DNEQLITQYEREK LRK AE K++E+EDS+EQ ++DLQ+ ++ LE RQ E KAK DQ+ R EER +E KKEY+ LH RH+EM+H YME +E L+S + PLP+ TPD K +T GSE LS S T L SN+ E E+ Q S TP + N V T TPLK + + + + ++E S+ ++ V R +++T S + + S E +AI+++TPEL + ++S Y+ TPT I + ++L+ L+ ++++ D L + +E + L++EN L++ ++ L KN+LI +++E++ ++++ + E++A++ K +++ K ELE+ L+K R E E A+ K+ + I +A RKRFTRVEMA+VLMERNQYKERLMELQEAVRWTEMIRAS+EN A+Q+KK+SSIW+ FS LF+ + P+ P+N+ Y ++ +R TLS P S A F+ ++E+ +R++++E+Y+ VK H+ E GR QA+GWSLP + G +PVPVY RPL+ + +MK+WCA G+NL GG+T D G+ +G + +K E S VWI TSTHS +KV IIDA P LD F V +SH+LC+ASVPG + D D+ +S
Sbjct: 17 GAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIRKERPISLGIFPLPAGDGLLTPDAQKGGETP-GSEQWKFQELSQPRSHTSLKVSNSPEPQKAVEQEDELSDVSQGGSKATTPASTANS---------DVATIPTDTPLKEENEGFVKVTDAPN--KSEISKHIEVQVAQETR--------NVSTGSAENEEKS-----EVQAIIESTPELDM------DKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMG----REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKARAEAEDARQKAKDD-DDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASREN--PAMQEKKRSSIWQFFSRLFSS-----------SSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKA---FDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDTSMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLDTEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVLIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEDLSES 815 The following BLAST results are available for this feature:
BLAST of TCONS_00054529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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