TCONS_00054486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054486
Unique NameTCONS_00054486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054486 ID=TCONS_00054486|Name=TCONS_00054486|organism=Clytia hemisphaerica|type=transcript|length=305bp
AAATCAGAGGTGTAACGCTGCCTCGAGGCTTTTACAGACCTGATCATATC
TCGTGtgattttgatactttttgccTCTACATCCTTAGCCAGCATTTGAT
CATGTGCTACACGTAATGACTTCAAAGATTCTTCTGACTGGTTTTCTACT
ATGAACTCTTTGTTGGCTTTAAACCCACGTTCGATGGCTGATTGCCCATG
GCTAAGATAAAAGATGATGATACAAATTTCCCGAAGCGCGGAATATTCTG
ATATGTAAGGCCACAAAAATGTGTCAAGGCGttgatcaaattttgaaaat
ttggc
Run BLAST on NCBI

protein sequence of TCONS_00054486-protein

>TCONS_00054486-protein ID=TCONS_00054486-protein|Name=TCONS_00054486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
AKFSKFDQRLDTFLWPYISEYSALREICIIIFYLSHGQSAIERGFKANKE
FIVENQSEESLKSLRVAHDQMLAKDVEAKSIKITRDMIRSVKASRQRYTS
D
Run BLAST on NCBI

transcript from alignment at scaffold_242:1270111..1270415

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054486 ID=TCONS_00054486|Name=TCONS_00054486|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_242:1270111..1270415 (Clytia hemisphaerica)
gccaaattttcaaaatttgatcaaCGCCTTGACACATTTTTGTGGCCTTA
CATATCAGAATATTCCGCGCTTCGGGAAATTTGTATCATCATCTTTTATC
TTAGCCATGGGCAATCAGCCATCGAACGTGGGTTTAAAGCCAACAAAGAG
TTCATAGTAGAAAACCAGTCAGAAGAATCTTTGAAGTCATTACGTGTAGC
ACATGATCAAATGCTGGCTAAGGATGTAGAggcaaaaagtatcaaaatca
CACGAGATATGATCAGGTCTGTAAAAGCCTCGAGGCAGCGTTACACCTCT
GATTT

Coding sequence (CDS) from alignment at scaffold_242:1270111..1270415

>TCONS_00054486 ID=TCONS_00054486|Name=TCONS_00054486|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_242:1270111..1270415 (Clytia hemisphaerica)
gccaaattttcaaaatttgatcaaCGCCTTGACACATTTTTGTGGCCTTA
CATATCAGAATATTCCGCGCTTCGGGAAATTTGTATCATCATCTTTTATC
TTAGCCATGGGCAATCAGCCATCGAACGTGGGTTTAAAGCCAACAAAGAG
TTCATAGTAGAAAACCAGTCAGAAGAATCTTTGAAGTCATTACGTGTAGC
ACATGATCAAATGCTGGCTAAGGATGTAGAggcaaaaagtatcaaaatca
CACGAGATATGATCAGGTCTGTAAAAGCCTCGAGGCAGCGTTACACCTCT
GAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034349XLOC_034349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054486-exon-scaffold_242-1491911889:1270111..1270415TCONS_00054486-exon-scaffold_242-1491911889:1270111..1270415Clytia hemisphaericaexon
TCONS_00054486-exon-scaffold_242-1510915933:1270111..1270415TCONS_00054486-exon-scaffold_242-1510915933:1270111..1270415Clytia hemisphaericaexon
TCONS_00054486-exon-scaffold_242-1575043694:1270111..1270415TCONS_00054486-exon-scaffold_242-1575043694:1270111..1270415Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054486-proteinTCONS_00054486-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1270111..1270415 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	8.02196e-07	0.818103	0	0.787022	1.22218	0.444459	0.489163	0	0	0	0	0.224452	0	0.225022	0	0.284131	0	0	0.474146	0	0	0	0	1.00132	0.506342	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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