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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054447 ID=TCONS_00054447|Name=TCONS_00054447|organism=Clytia hemisphaerica|type=transcript|length=1021bp
GGGCAAATCACCACAAACTCAAAAACCTAACCATCTAACCAGATTTTTCG
ATTAtgtttgttgaaattttgatttttacgacATGCATTTCAGAAGCATT
TGGCACGTCACAATCATCAGAGGTGACTTTATTATCAGTTGGGATTTTTT
CACTATGTGAAAATGAGGGGACTAGGATGGAATTTAATTTAAATGCTGAA
AGATACAAAGAAGCTATTGGCAATCTACCAAATGTAGTGTCTCAATATGT
AGAAGATACTCATAAACGAGAACCATACTTCAATATCGAGTTTATCAGCT
TTGACGTTTGCAAGAGCACAGAACGATTGGTCACCGTTCTTACAAACATC
CTCCTGaatgaaactttcttccgaAGAAGCAAACATACAAATTTATTGAA
GcagaatatttttcttttacatGCTTATGTATCAAAGGAAATGTCCAAAA
TGATTCAAGAAATGACCAGTTTGAGCAAATTCGTGAAATTGTGTGCTCCT
GTGAGTTGTGATGAAAACTACATTATTCAAAGCTCAGAAACTAGTTCAAA
ATATCTGATTGATTTTCTGGAGACTTTGCAATGGAGGAATGTAACATTTT
TGTTGGTAGAACAACCAGATCAAACTTTTCCTTACAGAAACTACTTTGAG
AATAGTTATAACCTCATAAAATCAactaaaaagttttgtttacaaaagaa
aATCATCAATATTTCAAGGAAAGCTAAAATGTGGCAAATTTCGCGCTTGG
TGTTTCCAATATTAAATCAAATCATCTCCAACCAATCAACGTTGATCCTT
TTCAGTAGTGAACCTGTGACAGATACTCTCGAAGTTCGACTTAAACGATA
TCCACAAAAATTGAGAATCATACTTCATGACTACCTACCTACAGGTCTCC
AAGCCACAGGAGTTGACAATTGGGCAACCATATATAATTACGAACGAAAG
TATATCGATTCAGGACAAAAACATGGTAGTAATACAATGTTTAAGCAACA
GGAAGCAGTGCAATATGGGAC Run BLAST on NCBI protein sequence of TCONS_00054447-protein >TCONS_00054447-protein ID=TCONS_00054447-protein|Name=TCONS_00054447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MFVEILIFTTCISEAFGTSQSSEVTLLSVGIFSLCENEGTRMEFNLNAER
YKEAIGNLPNVVSQYVEDTHKREPYFNIEFISFDVCKSTERLVTVLTNIL
LNETFFRRSKHTNLLKQNIFLLHAYVSKEMSKMIQEMTSLSKFVKLCAPV
SCDENYIIQSSETSSKYLIDFLETLQWRNVTFLLVEQPDQTFPYRNYFEN
SYNLIKSTKKFCLQKKIINISRKAKMWQISRLVFPILNQIISNQSTLILF
SSEPVTDTLEVRLKRYPQKLRIILHDYLPTGLQATGVDNWATIYNYERKY
IDSGQKHGSNTMFKQQEAVQYG Run BLAST on NCBI transcript from alignment at scaffold_242:120310..121330 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054447 ID=TCONS_00054447|Name=TCONS_00054447|organism=Clytia hemisphaerica|type=transcript|length=1021bp|location=Sequence derived from alignment at scaffold_242:120310..121330 (Clytia hemisphaerica)
GTCCCATATTGCACTGCTTCCTGTTGCTTAAACATTGTATTACTACCATG
TTTTTGTCCTGAATCGATATACTTTCGTTCGTAATTATATATGGTTGCCC
AATTGTCAACTCCTGTGGCTTGGAGACCTGTAGGTAGGTAGTCATGAAGT
ATGATTCTCAATTTTTGTGGATATCGTTTAAGTCGAACTTCGAGAGTATC
TGTCACAGGTTCACTACTGAAAAGGATCAACGTTGATTGGTTGGAGATGA
TTTGATTTAATATTGGAAACACCAAGCGCGAAATTTGCCACATTTTAGCT
TTCCTTGAAATATTGATGATtttcttttgtaaacaaaactttttagtTGA
TTTTATGAGGTTATAACTATTCTCAAAGTAGTTTCTGTAAGGAAAAGTTT
GATCTGGTTGTTCTACCAACAAAAATGTTACATTCCTCCATTGCAAAGTC
TCCAGAAAATCAATCAGATATTTTGAACTAGTTTCTGAGCTTTGAATAAT
GTAGTTTTCATCACAACTCACAGGAGCACACAATTTCACGAATTTGCTCA
AACTGGTCATTTCTTGAATCATTTTGGACATTTCCTTTGATACATAAGCa
tgtaaaagaaaaatattctgCTTCAATAAATTTGTATGTTTGCTTCTtcg
gaagaaagtttcattCAGGAGGATGTTTGTAAGAACGGTGACCAATCGTT
CTGTGCTCTTGCAAACGTCAAAGCTGATAAACTCGATATTGAAGTATGGT
TCTCGTTTATGAGTATCTTCTACATATTGAGACACTACATTTGGTAGATT
GCCAATAGCTTCTTTGTATCTTTCAGCATTTAAATTAAATTCCATCCTAG
TCCCCTCATTTTCACATAGTGAAAAAATCCCAACTGATAATAAAGTCACC
TCTGATGATTGTGACGTGCCAAATGCTTCTGAAATGCATgtcgtaaaaat
caaaatttcaacaaacaTAATCGAAAAATCTGGTTAGATGGTTAGGTTTT
TGAGTTTGTGGTGATTTGCCC Coding sequence (CDS) from alignment at scaffold_242:120310..121330 >TCONS_00054447 ID=TCONS_00054447|Name=TCONS_00054447|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_242:120310..121330 (Clytia hemisphaerica)
CCCATATTGCACTGCTTCCTGTTGCTTAAACATTGTATTACTACCATGTT
TTTGTCCTGAATCGATATACTTTCGTTCGTAATTATATATGGTTGCCCAA
TTGTCAACTCCTGTGGCTTGGAGACCTGTAGGTAGGTAGTCATGAAGTAT
GATTCTCAATTTTTGTGGATATCGTTTAAGTCGAACTTCGAGAGTATCTG
TCACAGGTTCACTACTGAAAAGGATCAACGTTGATTGGTTGGAGATGATT
TGATTTAATATTGGAAACACCAAGCGCGAAATTTGCCACATTTTAGCTTT
CCTTGAAATATTGATGATtttcttttgtaaacaaaactttttagtTGATT
TTATGAGGTTATAACTATTCTCAAAGTAGTTTCTGTAAGGAAAAGTTTGA
TCTGGTTGTTCTACCAACAAAAATGTTACATTCCTCCATTGCAAAGTCTC
CAGAAAATCAATCAGATATTTTGAACTAGTTTCTGAGCTTTGAATAATGT
AGTTTTCATCACAACTCACAGGAGCACACAATTTCACGAATTTGCTCAAA
CTGGTCATTTCTTGAATCATTTTGGACATTTCCTTTGATACATAAGCatg
taaaagaaaaatattctgCTTCAATAAATTTGTATGTTTGCTTCTtcgga
agaaagtttcattCAGGAGGATGTTTGTAAGAACGGTGACCAATCGTTCT
GTGCTCTTGCAAACGTCAAAGCTGATAAACTCGATATTGAAGTATGGTTC
TCGTTTATGAGTATCTTCTACATATTGAGACACTACATTTGGTAGATTGC
CAATAGCTTCTTTGTATCTTTCAGCATTTAAATTAAATTCCATCCTAGTC
CCCTCATTTTCACATAGTGAAAAAATCCCAACTGATAATAAAGTCACCTC
TGATGATTGTGACGTGCCAAATGCTTCTGAAATGCATgtcgtaaaaatca
aaatttcaacaaacaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054447-exon-scaffold_242-1491911889:120310..121330 | TCONS_00054447-exon-scaffold_242-1491911889:120310..121330 | Clytia hemisphaerica | exon |
| TCONS_00054447-exon-scaffold_242-1510915933:120310..121330 | TCONS_00054447-exon-scaffold_242-1510915933:120310..121330 | Clytia hemisphaerica | exon |
| TCONS_00054447-exon-scaffold_242-1575043694:120310..121330 | TCONS_00054447-exon-scaffold_242-1575043694:120310..121330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:120310..121330 . |
Blast
The following BLAST results are available for this feature:
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