TCONS_00054442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054442
Unique NameTCONS_00054442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054442 ID=TCONS_00054442|Name=TCONS_00054442|organism=Clytia hemisphaerica|type=transcript|length=1692bp
TATCACACGGGTGTTGATTATTTTGGTCCAATACTCGTCAAGGTACTGCG
AAGCCGTGTAAAGCGTTGGGGATGCATATTCACCTGCCTCACAACACGAG
CNATCAACGCCTACGTTCTATCACACGGGTGTTGATTATTTTGGTCCAAT
ACTCGTCAAGGTACTGCGAAGCCGTGTAAAGCGTTGGGGATGCATATTCA
CCTGCCTCACAACACGAGCAATTCACTTAGAAGTTGCACCATCCTTAGAA
TCAGACGACTTCATCAACGTATTGGAACGCTTCATTTGTAGGAGAGGAAG
CCCAAAGCTAATTCGTTCCGACTGTGGGACAAACTTTAAAGGAGCAAACA
ATGAACTCAAGAAGGAACTAGAACGTATGGACTCTGCCAAGATCGACCAA
AGCTTGAGACGTCAAAGCATTGAATGGGATTTCAACCCTCCAGAATCCCC
ACACATGGGTGGGGTATAGGAACGGATGGTTCGAAGTGTAAAAACGTCAC
TCAATGCGATCATCATGGCCGAATACGTCGTGTTAAACGATTTTACTCTC
CTGACAGTCCTCACTGAAGTAGAAGCACTTGTCAACAGCAGACCACTAAC
GTCAGTCAGTGATGACACGTCTGACCTGGACGCGCTAACTCCAAACCACT
TTATCATTGGAAGAGCTTCTACTCTACTTCCAACATGCATCACTTACAAT
GACAACGTGACTCCAAGAAAGCGCTGGAAACAAGTCCAGTCAATCACTCA
ACAATTCTGGGATAGATGGAGAAGGGAATACCTTCCAACTCTAACCGCTC
GAAACAAGTGGACTCGAGCTTCAAAAAACGTCCAGGTTGGTGACCTGGTC
CTGGTACATGACACCCAATCACTCAGCCACGGCAAATGGCTGCTCGGCCG
CATCAATCAAGTGTTTCCTGGTCGGGACAATCGCGTCCGAAAGGTCGAAG
TCATCACTCATTCCGGTCGTTATACACGGCCAATCACAATGATTTCACCA
CTCGAATTGAGCAACTAGGATTGCACCCCACCAGGAGAACCAGCATTCGT
ATCAATGTGGTAGTCAACACCTTCATTGGTTGGTTGACAATTATATCCAA
TTTGTTGGTCGTTATCCACTGATTCGATTAGTATTCGTATCCAGCTGTGG
TGCTGGTTGGTTCGATTGACGTTCGTTGTGTTAATTGGTAATGATCAATG
GGCGTGGCATGTTGGTGTTGGTTGTAAACTTCATTTGAGAGGTTTTCTCA
AGGACGGGGGTGTTACATTTTATATTTCCCCACGGAACTTTTAGCTAAAG
ATGTCCTTTGTGTCACTCTtacagtgaagtcaagtttaaaaatattttgt
attagGAAAAGCGACGGCTAGCTTACCTTTGTTGTTATTTCTCTTTTCAG
AATACCACTTCACATCAAAGTCAAACCATATACTGTCAGCACGCAATTTC
TCTTCATTTGACATTTAACAAAATGATAACGAAGCGTTACTCCCTTGAGA
CCCGACAACAGATTCAGTGCATCCATCCAAAAATTGTTGCAGTGATTAAG
AGCCGTTAATTATGCAAGCAAAACACCGTTATCAAGAAGAGATTAGAAAT
CTTGGTCAAGGATCTGCCCGAATACGACGAGGAGCTGCAAGAACTTCTCT
CCGACAAAAAGACAAAGAGACCGGCGTATGTCGACTTATATG
Run BLAST on NCBI

protein sequence of TCONS_00054442-protein

>TCONS_00054442-protein ID=TCONS_00054442-protein|Name=TCONS_00054442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MVRSVKTSLNAIIMAEYVVLNDFTLLTVLTEVEALVNSRPLTSVSDDTSD
LDALTPNHFIIGRASTLLPTCITYNDNVTPRKRWKQVQSITQQFWDRWRR
EYLPTLTARNKWTRASKNVQVGDLVLVHDTQSLSHGKWLLGRINQVFPGR
DNRVRKVEVITHSGRYTRPITMISPLELSN
Run BLAST on NCBI

transcript from alignment at scaffold_242:1781075..1784447-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054442 ID=TCONS_00054442|Name=TCONS_00054442|organism=Clytia hemisphaerica|type=transcript|length=3373bp|location=Sequence derived from alignment at scaffold_242:1781075..1784447- (Clytia hemisphaerica)
TATCACACGGGTGTTGATTATTTTGGTCCAATACTCGTCAAGGTACTGCG
AAGCCGTGTAAAGCGTTGGGGATGCATATTCACCTGCCTCACAACACGAG
CNATCAACGCCTACGTTCTATCACACGGGTGTTGATTATTTTGGTCCAAT
ACTCGTCAAGGTACTGCGAAGCCGTGTAAAGCGTTGGGGATGCATATTCA
CCTGCCTCACAACACGAGCAATTCACTTAGAAGTTGCACCATCCTTAGAA
TCAGACGACTTCATCAACGTATTGGAACGCTTCATTTGTAGGAGAGGAAG
CCCAAAGCTAATTCGTTCCGACTGTGGGACAAACTTTAAAGGAGCAAACA
ATGAACTCAAGAAGGAACTAGAACGTATGGACTCTGCCAAGATCGACCAA
AGCTTGAGACGTCAAAGCATTGAATGGGATTTCAACCCTCCAGAATCCCC
ACACATGGGTGGGGTATAGGAACGGATGGTTCGAAGTGTAAAAACGTCAC
TCAATGCGATCATCATGGCCGAATACGTCGTGTTAAACGATTTTACTCTC
CTGACAGTCCTCACTGAAGTAGAAGCACTTGTCAACAGCAGACCACTAAC
GTCAGTCAGTGATGACACGTCTGACCTGGACGCGCTAACTCCAAACCACT
TTATCATTGGAAGAGCTTCTACTCTACTTCCAACATGCATCACTTACAAT
GACAACGTGACTCCAAGAAAGCGCTGGAAACAAGTCCAGTCAATCACTCA
ACAATTCTGGGATAGATGGAGAAGGGAATACCTTCCAACTCTAACCGCTC
GAAACAAGTGGACTCGAGCTTCAAAAAACGTCCAGGTTGGTGACCTGGTC
CTGGTACATGACACCCAATCACTCAGCCACGGCAAATGGCTGCTCGGCCG
CATCAATCAAGTGTTTCCTGGTCGGGACAATCGCGTCCGAAAGGTCGAAG
TCATCACTCATTCCGGTCGTTATACACGGCCAATCACAATGATTTCACCA
CTCGAATTGAGCAACTAGGATTGCACCCCACCAGGAGAACCAGCATTCGT
ATCAATGTGGTAGTCAACACCTTCATTGGTTGGTTGACAATTATATCCAA
TTTGTTGGTCGTTATCCACTGATTCGATTAGTATTCGTATCCAGCTGTGG
TGCTGGTTGGTTCGATTGACGTTCGTTGTGTTAATTGGTAATGATCAATG
GGCGTGGCATGTTGGTGTTGGTTGTAAACTTCATTTGAGAGGTTTTCTCA
AGGACGGGGGTGTTACATTTTATATTTCCCCACGGAACTTTTAGCTAAAG
ATGTCCTTTGTGTCACTCTTACAGTGAAGTCAAGTTTAAAAATATTTTGT
ATTAGGAAAAGCGACGGCTAGCTTACCTTTGTTGTTATTTCTCTTTTCAG
AATACCACTTCACATCAAAGTCAAACCATATACTGTCAGCACGCAATTTC
TCTTCATTTGACATTTAACAAAATGATAACGAAGCGTTACTCCCTTGAGA
CCCGACAACAGATTCAGTGCATCCATCCAAAAATTGTTGCAGTGATTAAG
AGCCGTTAATTATGCAAGCAAAACACGTAATATTTATTATGATTTAATTT
TTCTGGCAAGGTATATTTATTAAAAGTAAAGTAAATTCTTTTCAGCAAAT
GTAACTAGGACTTTAACTTTTTGTAATGAGTTTTTTAGTATATCGATTCT
CTGTCTACGTTTTCTTTCTTGGAGGGCGTGGTAAAAACACGTTTAATGTG
GATTTAATTCCCTCTATAACCGTAACACAATTTCGCAATTTCGTCAATTT
TATTTTTAAAGTCTCAAAAATCGTTTCCCAGGTCTTGGGACGGTAATTCA
GGTCTTGGGCCGCTAAATCAGGGCTTGGGCTGCTAAATCAGGGCTTGGGC
CGCTTACAGAAAAAAATTTGCGGCGGGAACTAGGTTTGCTGGAAGACGGG
CTGGCCCGCTCGGATGTTTGGTAATCAGAAATTTGGAGGGCAAAACCGTA
GAAACTAATCAGAAAATTTGGCAATTTAGCTCTTTTTCGTAACTCATTGG
TGACTGAAATAAATTTTTTTCTGTTCGCATACCCGTACCATCTATTTGCC
TAGTCCCCTCCGTGTATCTAGGTTATTCGAATTGGAAGTACGTTGTAAAT
ATTTCACGTACTCTTAAAGTAACCTGTTTTGAATATTTCTCATATTGCAT
TGTCGATTCCCAATTCTATGTAATTCTTGTTCAATCTATCCAAAAGTTTG
AGCTTATCAGCCTTTTTTTATATAAAAGATCTAAGAAATAAACCATTAAT
GGGCACTGATCTGTTTCGTCTCGGCAAAATGGAGCCCATACTATAGTCAA
CTTTATCTATATCAAACTAACCCGATATTGAAGTCTTTAATGAATATAAA
AAGATCACCCTCCAGTCCGATAAATCCAAGTCCGAGGCACAATAAAAGAC
ATAATATTTGAGAAAAAAGGGAAATCCCCACGAAATTTTATAACAACACA
CGATCTGGAGCTGCTGGAACTTAGGTTGGAATGGTGGAGTTTAACGCTAG
ACTGAAGGCCTTAGGATCTGAAGATCCAAAAGTTCAAGAATGATCTAATA
GGGCTTTGAATATAGCGTGGAAGTCTATAAACCCCTCCCGAATTGAAAAA
AATTGAACAAATTTATCAATTAGCCCAAAAGCGACTTTAAATCGCTAAAA
ACGAGGAATTAAACCAAATTCTCAATTCTCATATTTTAACCGAGTTTGCA
GAAATCACCTAACGAAAACTATAATGCAACTAAAAAACGCTATGTGTGAA
TAGTTATAGACTGTTTAATTGCAAAATTGAAGATAACTACGGAAATGAAT
TAACTCCGAGACTGCCTTACTCCTTTATTTCCTTGCTGTTTTCACTTCAC
ACTTGAAGAGGCTATCTGAACTTGAAAATGTACAGAGTTCTGTTGGGTCG
TTAGTGTTAATAATGTAACGTGGACATTCACCAATATCATATTCCCAGTG
AAAAACAAGTGCTGACAAACATCGTGCATGGCGTTGTTTTCATTGGACCG
TAAGTTAAGTAAACTTATAGTTTAACTTATGTATACACGATGGTAATCTC
GTGGGAACAAGCTACAGGAGTTAGACCGACCATGACAATCAGAAAAAGCG
AAACGTCTGGAAGGGGGTGACCTAGCACTGGGAATGAGTATACCTTGTAT
TTTTATTGTGTTGAACAGTGAAAAGAATGCGGCTATTATAATTTGCATTT
ATTTTAGCGTTATCAAGAAGAGATTAGAAATCTTGGTCAAGGATCTGCCC
GAATACGACGAGGAGCTGCAAGAACTTCTCTCCGACAAAAAGACAAAGAG
ACCGGCGTATGTCGACTTATATG

Coding sequence (CDS) from alignment at scaffold_242:1781075..1784447-

>TCONS_00054442 ID=TCONS_00054442|Name=TCONS_00054442|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_242:1781075..1784447- (Clytia hemisphaerica)
ATGGTTCGAAGTGTAAAAACGTCACTCAATGCGATCATCATGGCCGAATA
CGTCGTGTTAAACGATTTTACTCTCCTGACAGTCCTCACTGAAGTAGAAG
CACTTGTCAACAGCAGACCACTAACGTCAGTCAGTGATGACACGTCTGAC
CTGGACGCGCTAACTCCAAACCACTTTATCATTGGAAGAGCTTCTACTCT
ACTTCCAACATGCATCACTTACAATGACAACGTGACTCCAAGAAAGCGCT
GGAAACAAGTCCAGTCAATCACTCAACAATTCTGGGATAGATGGAGAAGG
GAATACCTTCCAACTCTAACCGCTCGAAACAAGTGGACTCGAGCTTCAAA
AAACGTCCAGGTTGGTGACCTGGTCCTGGTACATGACACCCAATCACTCA
GCCACGGCAAATGGCTGCTCGGCCGCATCAATCAAGTGTTTCCTGGTCGG
GACAATCGCGTCCGAAAGGTCGAAGTCATCACTCATTCCGGTCGTTATAC
ACGGCCAATCACAATGATTTCACCACTCGAATTGAGCAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034307XLOC_034307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054442-proteinTCONS_00054442-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054442-exon-scaffold_242-1575043694:1782872..1784447TCONS_00054442-exon-scaffold_242-1575043694:1782872..1784447Clytia hemisphaericaexon
TCONS_00054442-exon-scaffold_242-1575043694:1781075..1781190TCONS_00054442-exon-scaffold_242-1575043694:1781075..1781190Clytia hemisphaericaexon
TCONS_00054442-exon-scaffold_242-1510915933:1782872..1784447TCONS_00054442-exon-scaffold_242-1510915933:1782872..1784447Clytia hemisphaericaexon
TCONS_00054442-exon-scaffold_242-1510915933:1781075..1781190TCONS_00054442-exon-scaffold_242-1510915933:1781075..1781190Clytia hemisphaericaexon
TCONS_00054442-exon-scaffold_242-1491911889:1782872..1784447TCONS_00054442-exon-scaffold_242-1491911889:1782872..1784447Clytia hemisphaericaexon
TCONS_00054442-exon-scaffold_242-1491911889:1781075..1781190TCONS_00054442-exon-scaffold_242-1491911889:1781075..1781190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1781075..1784447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59132	1.3111	2.13871	2.55317	1.33711	1.98761	1.79295	1.98296	1.91804	1.91458	1.7526	1.05731	0.994591	1.06458	1.21162	1.2921	0.772231	0.838003	0.762919	0.901601	0.926209	1.09933	0.907618	0.743453	1.3947	1.60049	0.662648	0.350084	1.8596	2.72046
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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