TCONS_00054428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054428
Unique NameTCONS_00054428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054428 ID=TCONS_00054428|Name=TCONS_00054428|organism=Clytia hemisphaerica|type=transcript|length=2099bp
ttcaattgttttccGATTAGTTCAAGTTGATTTTAGATTTAAAGCGAAAA
AGCGAAGAAGAAAGTTTCTTCGGaagaattttgaatttgttcaACGGGAA
CGGTCGAATTTAGCTGGTTTTGGAAGAGTCGCCTAGTATCGTTTAAGgga
gatttcaaaatgagtttCCGTGTAGGTATTGGTGTCTTACTCATGGTATC
AATGACTTTCGCACTCACGGTCAAAGGTCCAAAGTCGCTACACGATAAAA
TCTGCATTGTCGGCGCCGGACCGTCAGGAATTCACATGGCGCTAAGTTTG
AAGGAGCGCGGTTTCACCAATATTGTCATTTTGGAGAAGAATTCTTTCGT
GGGTGGTAAATCATGGACTATCAACCACCGGGGCGTCGCCCATGAAATGG
GATCAGTTTATCTGGCACCTGATTACGAAGACAATGTTATCCCTTTGGTT
AATAAATACATGCCGAATGATTTAgtgattttacccccgtctgCTGTTTG
GATGGATGATTTGCCGGGACCGATTCCTTACGAGCAATATTTGATTGGTT
ATGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGGCAGGTGGAAAG
TTGGGGCAGACAATCGTGCAGTATATCGCCAAACATAATGAAATATTTGG
TGCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGATAATAAAGTGA
AAATCCAAGGAACTTTTGTTGACTTTCTATCAAGAAACAATATGTTGGCC
ATGCAATGCATTCTGTACGCTTCCAGTTCCGTGCAAGGTTACGGTCGCCT
CGATGAAATTCCAGCATTGTATGGACTGATGTGGAATACACCGAAATTGA
TGGCATCCCTTCTCCAAAGGCTCTCAGGGAACACGAATGGCACAGGTTTG
TACATGTTGAGACATGGTTTCAAAACACTCTGGGAAAGAATCATTCAAGC
TGAAAATCTGGACGTGCGTTTCAGCAGTGAAATTTACCGACTGTATCGGA
GTAAAACCGAACCAAAAGTGTGGCTTGAAGTTGAGAGCAGTGGAACGAGA
AAATTCAATTCGTACGATTTCTTGATTTGGAGTCCAGAGATGAAAACGAG
TCTTCCATTATGGGATGCGAACGTTGAGGAAAGATTTTACTTTTCACGCT
CAAAACCTGCCTTCTTTACAACCGCCCTAGTTGACACGGATGGGGAATTA
AGGGCGCCATCGCCGATTGATTACTGGTTTGATAACATCAATAAGAAACG
CCAACACTCCCTTTGGGCGTTAAGAGATTCCTATGGCGCCCTTCATGGAT
ATTCAGGGGCAATGTATCAGTCGAAATTATACCCGAGCGGTAACGATGGC
AAGCAGACTAGATCACAAGTCACTTATCAAATGGGTGACGAAGCACCTGT
CTATACTGAGCTGAGACATACCTTGCTAAACGCTATGAAAACAGACCTTC
AAGCTAGTTCAGTTAATGTTCTGTATATGAAGACATGGCGATATTTTCCT
CGATTTTCGCATCAAGATCTCGCTGATGGCATGTTGTGGAGGATCTTGGA
GATGCAAGGCAATCACGGGATGTGGTATATCGGATCATCAGTGTCCTTCG
AAAGCGTCAAATCTGTTGTAGAGTATAATAAGCTACTCTTAAAACATTTC
ACTGTACCAACTAGCTGAGAATAACAATTTGTAATAGCCACTATTTATAG
TATGAACAACAATCACCAGCCAAATAATTTATTATAATATATTCTTCTTA
TGTAAGGTATGAACAATTTTATGAGTTAAAAGataaataaaattcttttt
tcacaaCTTAATGTCCTTTGCTTTTTCGTTTGCCCATTAGAAAATACAAT
ACCTTTAATCGAAAGTTCATTCAAAATAGCGATAAGTTGTCAAGAGAAAA
ACTAAACCCGAATTCAGAAACCTGATTCATACCATCGTTTGTTAAGAACC
TCTTATGCCTAGAGGGGTTATAAAACCAATATAAAACGAAGAGATTTTTT
ACTTACAGACTTTATCATGCTCCAAGGACTTGTCATTACTTTGTCTTGCC
AGTGATCTGTATTTCCATAATATTTTCCtattattttcttaattttcat
Run BLAST on NCBI

transcript from alignment at scaffold_242:1701298..1706976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054428 ID=TCONS_00054428|Name=TCONS_00054428|organism=Clytia hemisphaerica|type=transcript|length=5679bp|location=Sequence derived from alignment at scaffold_242:1701298..1706976- (Clytia hemisphaerica)
TTCAATTGTTTTCCGATTAGTTCAAGTTGATTTTAGATTTAAAGCGAAAA
AGCGAAGAAGAAAGTTTCTTCGGAAGAATTTTGAATTTGTTCAACGGGAA
CGGTCGAATTTAGCTGGTTTTGGAAGAGTCGCCTAGTATCGTTTAAGGTA
ATCACTTACATTTCTTTAAACAAGGCTGCAAAAAAGGTTAAAATCTTTTC
TTTGACACTATCAGCATTATCCGAAATGAACAAGGACAAATAATAATACC
CCAACTCTACTACAATATAAGACTATGTTTAATTGTACCAAATCAACCAA
CTTAAATTTCTATTTGTCGTCTTTATAGGGAGATTTCAAAATGAGTTTCC
GTGTAGGTATTGGTGTCTTACTCATGGTATCAATGACTTTCGCACTCACG
GTCAAAGGTCCAAAGTCGCTACACGATAAAATCTGCATTGTCGGCGCCGG
ACCGTCAGGAATTCACATGGCGCTAAGTTTGAAGGAGCGCGGTTTCACCA
ATATTGTCATTTTGGAGAAGAATTCTTTCGTGGGTGGTAAATCATGGACT
ATCAACCACCGGGGCGTCGCCCATGAAATGGGATCAGTTTATCTGGCACC
TGATTACGAAGACAATGTTATCCCTTTGGTTAATAAATACATGCCGAATG
ATTTAGTGATTTTACCCCCGTCTGCTGTTTGGATGGATGATTTGCCGGGA
CCGATTCCTTACGAGCAATATTTGATTGGTAAGTTTGTTTGTTAAGTTTC
CCAGTTTAGCGAAATTTTTGCAAACAAATTAAAGCATCTTACATAAGGTG
TTCTACTTGCGATATCCGACTAAACCATTGACTTTTTACCTTAAAATGGA
AGGTGCCGAAAATATTATTTATAGAAAGGCTCAGATAGGCTTTTTAACAA
AAATATCTGAGATATAATGAGAACTGAATTTAGAAATGCGTCATTTTTTC
AATAATAGGTTATGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGG
CAGGTGGAAAGTTGGGGCAGACAATCGTGCAGTATATCGCCAAACATAAT
GAAATATTTGGTGCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGA
TGTACGTTTGTTTACACAGTTGATTCTCCGTAACTTGAACTAGCACGGGG
AACAAAAAGTTGTTCGAGTAAAGGGCTTTCGAGTTATGGAGTAAGGTTTA
TAAAGCATTGTTGACTGAAGGGACGAAAGTGAAAGTCTTTGTTAAGTTCC
GTAGCGTCTTATTTGAAAGAGTGTCCATTTTTCTGACAAACCAAAAATTA
AGGGGAGAAAAGGTGACAATAATCATGCTAAAATTAATCTATTTTCCTTC
CATAAAATTCAGAATAAAGTGAAAATCCAAGGAACTTTTGTTGACTTTCT
ATCAAGAAACAATATGTTGGCCATGCAATGCATTCTGTACGCTTCCAGTT
CCGTGCAAGGTTACGGTCGCCTCGATGAAATTCCAGCATTGTATGGACTG
ATGTGGAATACACCGAAATTGATGGCATCCCTTCTCCAAAGGCTCTCAGG
GAACACGAATGGCACAGGTAAGTTGGATGATTATCTGATATTCCGATGGC
GGATTGGCGGCCGCTCATGCTAAAGCTCTAAAAGAGCGGGTCAATTTCGC
ATCGTAGAGGAATGATAGTGGGCCTTTGATGTGCCGCATCCCCAGTCGAG
TTCAACTACCTCTGCGCGTAAGTTATCATTTGGACCCACCAGTCCCCGAA
AACAAGGGCTGGGTTCTCAGACCTCCCGTTGCAAAATCATTGACTCGGTC
TTGCAAAATTTCGTAATCTAAACCTTCCAGATGTTGAAAATTTTTCCGAC
CTTTAGAGCTTTAGCGTGTCGGATGAAAATTTCTGCATCTGGATGCCAGG
TAAGTTGGACGAGTGAATGTAGAAAGAGAGAGAGAGAGAACGAATAATTT
CATAAGTGAGTGAACGGACGAAATTGCGAGTTATGAAAGATGAAAAGAAC
AAGCACGATGAACAATAAAATCATTGAAATGGGCACGCAAGTATGCGGTT
CTAGACTTTATGTTAGTTAGTACAGTGGACTCCACGTAACGCGAAAACGT
ACGACACGGGAAAGTAAAATTTGTTCAAATTAAGGGAGTTTTGAGTTACG
GGGATTAAATTAAGGATTATAGAGCATCGATTCGAGTTAAGGAGACGTTC
ATATAGAGATTCAAGTTAATGAAACTTCACTGTATTTCAGGTTTGTACAT
GTTGAGACATGGTTTCAAAACACTCTGGGAAAGAATCATTCAAGCTGAAA
ATCTGGACGTGCGTTTCAGCAGTGAAATTTACCGACTGTATCGGAGTAAA
ACCGAACCAAAAGTGTGGCTTGAAGTTGAGAGCAGTGGAACGAGAAAATT
CAATTCGTACGATTTCTTGATTTGGAGTCCAGAGATGAAAACGAGTCTTC
CATTATGGGATGCGAACGTTGAGGAAAGATTTTACTTTTCACGCTCAAAA
CCTGCCTTCTTTACAACCGCCCTAGTTGACACGGATGGGGAATTAAGGGC
GCCATCGCCGATTGATTACTGGTTTGATAACATCAATAAGAAACGCCAAC
ACTCCCTTTGGGCGTTAAGAGATTCCTATGGCGCCCTTCATGGATATTCA
GGGGCAATGTATCAGTCGAAATTATACCCGAGCGGTAACGATGGCAAGCA
GACTAGATCACAAGTCACTTATCAAATGGGTGACGAAGCACCTGTCTATA
CTGAGCTGAGACATACCTTGCTAAACGCTATGAAAACAGACCTTCAAGCT
AGTTCAGTTAATGTTCTGTATATGAAGACATGGCGATATTTTCCTCGATT
TTCGCATCAAGATCTCGCTGATGGCATGTTGTGGAGGATCTTGGAGATGC
AAGGCAATCACGGGATGTGGTATATCGGATCATCAGTGTCCTTCGAAAGC
GTCAAATCTGTTGTAGAGTATAATAAGCTACTCTTAAAACATTTCACTGT
ACCAACTAGCTGAGAATAACAATTTGTAATAGCCACTATTTATAGTATGA
ACAACAATCACCAGCCAAATAATTTATTATAATATATTCTTCTTATGTAA
GGTATGAACAATTTTATGAGTTAAAAGATAAATAAAATTCTTTTTTCACA
ACTTAATGTCCTTTGCTTTTTCGTTTGCCCATTAGAAAATACAATACCTT
TAATCGAAAGTTCATTCAAAATAGCGATAAGTTGTCAAGAGAAAAACTAA
ACCCGAATTCAGAAACCTGATTCATACCATCGTTTGTTAAGAACCTCTTA
TGCCTAGAGGGGTTATAAAACCAATATAAAACGAAGAGATTTTTTACTTA
CAGACTTTATCATGCTCCAAGGACTTGTCATTACTTTGTCTTGCCAGTGA
TCTGTATTTCCATAATATTTTCCTATTATTTTCTTAATTTTCATTTTGCT
GAAAGAAATATAATGATTCGAAAACATAACGTCAATAATACGCGAATGTG
CCTATCCCCCGGACCAAAATTATTCATGCGAATTAATAAGGGATCGTGAG
AAAATCCGTTTTAAGATTTCCAGATAAACTTTTATTTCACTTTCCTTGAC
ATTTTGCAGTAGACACCCAAAACTACACAAAATTGTATTGAGTTCCGCTA
AAAGAAGTCAGTGTGAAAATTAGTCCCCAAAAGGGGATCATGAGATCAAT
CAATACTTTTTCTCTCTTAAGAAGGAAATACAGTAATTACACTCTTAAGT
CACGAATTTAATTAGTTAAGATTTTGAATAATGTTGAAAAAGATTTATCA
TTATGGTCAAGGGTAAACGTAAGAAGAGTCACCCAGCTACCAAGAGNCCA
CGTTAAAGCTCTAAAGGAGCGGGTCAATCTCGCATCGTAGAGGAATGATA
GTGGGCCTTTGATGTGCCGCATACCCAGTCGAGTTCAACTACCTCTGCGC
GTAAGTTATTTCAGTTGGACCCACCAGTCCCCGAAAACGAGGGCTGGGTT
ACCAGACCTCCCGTTGCAAAATCTTTGAGGCGGTCTTGCAAAATTTCGTA
ATCTAAACCTTCCAGATGTTGAAAAATTTTCCGACCTTTAGAGCTTTAGC
GTGTCGGATGAAAATTTCTGCATCTGGATGCCAGGTAAGTTGGACGAGTG
AATGTAGAAAGAGAGAGAGAGAGAACGAATAATTTCATAAGTGAGTGAAC
GGACGAAATTGCGAGTTATGAAAGATGAAAAGAACAAGCACGATGAACAA
TAAAATCATTGAAATGGGCACGCAAGTATGCGGTTCTAGACTTTATGTTA
GTTAGTACAGTGGACTCCACGTAACGCGAAAACGTACGACACGGGAAAGT
AAAATTTGTTCAAATTAAGGGAGTTTTGAGTTACGGGGATTAAATTAAGG
ATTATAGAGCATCGATTCGAGTTAAGGAGACGTTCATATAGAGATTCAAG
TTAATGAAACTTCACTGTATTTCAGGTTTGTACATGTTGAGACATGGTTT
CAAAACACTCTGGGAAAGAATCATTCAAGCTGAAAATCTGGACGTGCGTT
TCAGCAGTGAAATTTACCGACTGTATCGGAGTAAAACCGAACCAAAAGTG
TGGCTTGAAGTTGAGAGCAGTGGAACGAGAAAATTCAATTCGTACGATTT
CTTGATTTGGAGTCCAGAGATGAAAACGAGTCTTCCATTATGGGATGCGA
ACGTTGAGGAAAGATTTTACTTTTCACGCTCAAAACCTGCCTTCTTTACA
ACCGCCCTAGTTGACACGGATGGGGAATTAAGGGCGCCATCGCCGATTGA
TTACTGGTTTGATAACATCAATAAGAAACGCCAACACTCCCTTTGGGCGT
TAAGAGATTCCTATGGCGCCCTTCATGGATATTCAGGGGCAATGTATCAG
TCGAAATTATACCCGAGCGGTAACGATGGCAAGCAGACTAGATCACAAGT
CACTTATCAAATGGGTGACGAAGCACCTGTCTATACTGAGCTGAGACATA
CCTTGCTAAACGCTATGAAAACAGACCTTCAAGCTAGTTCAGTTAATGTT
CTGTATATGAAGACATGGCGATATTTTCCTCGATTTTCGCATCAAGATCT
CGCTGATGGCATGTTGTGGAGGATCTTGGAGATGCAAGGCAATCACGGGA
TGTGGTATATCGGATCATCAGTGTCCTTCGAAAGCGTCAAATCTGTTGTA
GAGTATAATAAGCTACTCTTAAAACATTTCACTGTACCAACTAGCTGAGA
ATAACAATTTGTAATAGCCACTATTTATAGTATGAACAACAATCACCAGC
CAAATAATTTATTATAATATATTCTTCTTATGTAAGGTATGAACAATTTT
ATGAGTTAAAAGATAAATAAAATTCTTTTTTCACAACTTAATGTCCTTTG
CTTTTTCGTTTGCCCATTAGAAAATACAATACCTTTAATCGAAAGTTCAT
TCAAAATAGCGATAAGTTGTCAAGAGAAAAACTAAACCCGAATTCAGAAA
CCTGATTCATACCATCGTTTGTTAAGAACCTCTTATGCCTAGAGGGGTTA
TAAAACCAATATAAAACGAAGAGATTTTTTACTTACAGACTTTATCATGC
TCCAAGGACTTGTCATTACTTTGTCTTGCCAGTGATCTGTATTTCCATAA
TATTTTCCTATTATTTTCTTAATTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034301XLOC_034301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054428-exon-scaffold_242-1575043694:1706830..1706976TCONS_00054428-exon-scaffold_242-1575043694:1706830..1706976Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1575043694:1706249..1706648TCONS_00054428-exon-scaffold_242-1575043694:1706249..1706648Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1575043694:1705876..1706018TCONS_00054428-exon-scaffold_242-1575043694:1705876..1706018Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1575043694:1705410..1705614TCONS_00054428-exon-scaffold_242-1575043694:1705410..1705614Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1575043694:1701298..1702501TCONS_00054428-exon-scaffold_242-1575043694:1701298..1702501Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1510915933:1706830..1706976TCONS_00054428-exon-scaffold_242-1510915933:1706830..1706976Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1510915933:1706249..1706648TCONS_00054428-exon-scaffold_242-1510915933:1706249..1706648Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1510915933:1705876..1706018TCONS_00054428-exon-scaffold_242-1510915933:1705876..1706018Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1510915933:1705410..1705614TCONS_00054428-exon-scaffold_242-1510915933:1705410..1705614Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1510915933:1701298..1702501TCONS_00054428-exon-scaffold_242-1510915933:1701298..1702501Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1491911889:1706830..1706976TCONS_00054428-exon-scaffold_242-1491911889:1706830..1706976Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1491911889:1706249..1706648TCONS_00054428-exon-scaffold_242-1491911889:1706249..1706648Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1491911889:1705876..1706018TCONS_00054428-exon-scaffold_242-1491911889:1705876..1706018Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1491911889:1705410..1705614TCONS_00054428-exon-scaffold_242-1491911889:1705410..1705614Clytia hemisphaericaexon
TCONS_00054428-exon-scaffold_242-1491911889:1701298..1702501TCONS_00054428-exon-scaffold_242-1491911889:1701298..1702501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1701298..1706976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.262798	0.0804567	0.280254	0.35349	0.222529	0.0879227	0.21215	0.297918	0.556212	0.688959	1.17026	1.37372	2.74362	3.02023	0.234249	0.3546	1.92005	1.96799	12.0157	9.82026	4.38745	5.25284	2.2704	2.06413	1.86025	2.05552	0.113133	0.109878	0.354189	0.360863
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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