|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054398 ID=TCONS_00054398|Name=TCONS_00054398|organism=Clytia hemisphaerica|type=transcript|length=267bp
GAAGAAAAGTCACGAAGTCTAAAATTGAGAGAGGTATTCATCTGGAGTGA
TAGCTCACTATTGGAGAGCATTTTTGTGATATACTTTCTATTGCAAGATC
GTCTTTTAATTATCAACATTTAAAATGCCTATGGATGGTGGATGCTGCCT
CACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATGAAATTGAAAGGC
AGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTGAAACTGTTATTA
TTAGGTTAGTTAAGAAC Run BLAST on NCBI transcript from alignment at scaffold_242:1337776..1340099- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054398 ID=TCONS_00054398|Name=TCONS_00054398|organism=Clytia hemisphaerica|type=transcript|length=2324bp|location=Sequence derived from alignment at scaffold_242:1337776..1340099- (Clytia hemisphaerica)
GAAGAAAAGTCACGAAGTCTAAAATTGGCAAGTTTTAAAAGTTTAAAGTG
GGCGAGAGAGAGAGAGAGGTTTCTTATCATTTTTTATCTCATATAGCCGC
TAATCTAAAAATAAGATTCAAACTGTTTCAAAATAATAAATTTCGAAAAT
CTTAAAATAGATTTATCCTACGCTTACGTGGAGGGGAAAGTATTCTAGCA
GTAAATCCGTATAATGTTGGTAGCAAAAAAGGCAATGCTCCTTGAGTAGG
AGGGTTGTTATTATGATTCAATGGCCCCAGTTAAGCAGGGCCATGGCTCC
ACTTTGAAAGTGATAGGTCCATGATATACTGACGAAGAAGGTGTCACCAT
GATTGGCACCGACGAACAAAAATTTTAGAATTTAAGCCTTCTAGATCACC
TAAAACAGGTTTGTTTCATCGTTATTAAAAAAAAAACTTGGCTTGATTAG
TAAACTTTCTTCTTACTTTGAAAAAATGTTGACTGCCCCACCCCCGGTGC
CGCAGCGCCTATTATAGGAGACGCCCCTCAGATTCAACACTCACCCCGCC
ATCATATAAAATAATAAATAGTCCTTTCAAATTTTTGACCTACCAGTACC
ACGCATCACGTCAAACTCTTGATCACACCATAACACAGGAAAAACCCAAC
TCACGCCATTATATGAGCTCAGTTAGGAGCTGGGCGGGTAGTCGAGTCTA
AAAAAGAGTCGAGAGTAAAAAATCTCTTTTGGCGCCCCTTGCTCCTCGGC
GCCCCTTCAAAAAAGCTCCGCTGAGGGGGGGGGCTGCCACAACGCCACTG
TAAGGCCCCTGTAATTCAGGAGTAATATCCATTGAGTTTCAAGCCCGAGA
AGGGCTAGAGGTCAATCTCTTTGGTAGGATTTGAAGCCAACAAATCCTAC
CAAAGTTGCGCGGCCTTGAGCGACCAGCCTGGTTTTTACACAAATGACAG
ATTGAAACTAAAATTTACCGCTTCATTTTGAAAAATATATCACTCGAAAA
CAAAGGAATTNACAAATGACAGATTGAAACTAAAATTTACCGCTTAATTT
CGAAAATATATCACTCGAAAACAAAGGAATTGCTAGATTCAATCCGTCAT
CAAAAATACGGCGCATATTTTAAGGCTTCAATTTTTCTTGCCTGAGAAAG
GATAGAGATTGACCTCAATGGTAACTCAATGGTAATATCGTATAATTTGA
ATGAGTTTTGGTTTCGCCGGGGGGGGGGGTCGTAAATTCGGGTCTTTAAA
ATACACTTTGTCCTCAAAATGAAGTAATTTTATCAAAAACACTATGTTTA
CGTAAACAAACATCCTCATCCATTCAATTAGTAGATAGGAAAGTAAAAAG
ATAAAGTCGTCAGTTGCTTTCTATATGAAAAATGAAATAGAACATTTTTA
AAAAGCCTAGAAAAACCGAGACTCTTTTCAGTTCCTATTTTCAAAAAGTA
AATAAAAATGCGTGGGTGTGTGTGAGAGAGAAAACATTATTCAAAAAATA
AGAGGCCTTTCGGGCCTTGTTGTATAACTGAAAAAATAGGAGAGAAATAT
ATATGAATTTAAAAATGATATATTTGACAATGTAAAACTCAACACTGTGC
TTTTTTCCACTTTTTGTGAAAGTATGCCAAGAATTTTCACATCAATTGAT
TAAACGCCCTAGTTAACGCCTGCGCTATTACACCCCTCGAAGAGATGCGT
CCAAGAGGGAAAAGAAGTCTGAGAATGAGATTGTCTTTTCCATTAAAGGT
GTTTGAAAAATCACGTGATGTACGATTCATCGCATGACCATCTGCTGCGA
AACTTCTAATGTTTTGGTCACGTGATATAAGCCGTTTCGCCTAAATGAAA
AACCACATCGGCGAAAAATGCGTTTATTTAGCTCAAAACTCAAAGCTGCA
AGATTTTCCGAGATGGCTGACCGATATCTTAAAATGACTTGATGGATACG
CCCTAGCCGACTTTCAGAACATACAACATTATAAAGATCATTTATGTAGT
TTTTTGTTTAAAAAACAAGAGTTCAATGTTGTCTTGTGTTGGAATAATAC
TGGCTTTGGACTATAACCAGTAAATTGCTTTTAGAGAGAGGTATTCATCT
GGAGTGATAGCTCACTATTGGAGAGCATTTTTGTGATATACTTTCTATTG
CAAGATCGTCTTTTAATTATCAACATTTAAAATGCCTATGGATGGTGGAT
GCTGCCTCACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATGAAATT
GAAAGGCAGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTGAAACT
GTTATTATTAGGTTAGTTAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054398-exon-scaffold_242-1575043694:1340073..1340099 | TCONS_00054398-exon-scaffold_242-1575043694:1340073..1340099 | Clytia hemisphaerica | exon |
| TCONS_00054398-exon-scaffold_242-1575043694:1337776..1338015 | TCONS_00054398-exon-scaffold_242-1575043694:1337776..1338015 | Clytia hemisphaerica | exon |
| TCONS_00054398-exon-scaffold_242-1510915933:1340073..1340099 | TCONS_00054398-exon-scaffold_242-1510915933:1340073..1340099 | Clytia hemisphaerica | exon |
| TCONS_00054398-exon-scaffold_242-1510915933:1337776..1338015 | TCONS_00054398-exon-scaffold_242-1510915933:1337776..1338015 | Clytia hemisphaerica | exon |
| TCONS_00054398-exon-scaffold_242-1491911889:1340073..1340099 | TCONS_00054398-exon-scaffold_242-1491911889:1340073..1340099 | Clytia hemisphaerica | exon |
| TCONS_00054398-exon-scaffold_242-1491911889:1337776..1338015 | TCONS_00054398-exon-scaffold_242-1491911889:1337776..1338015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1337776..1340099 - |
Blast
The following BLAST results are available for this feature:
|
