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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054397 ID=TCONS_00054397|Name=TCONS_00054397|organism=Clytia hemisphaerica|type=transcript|length=1698bp
ttaaaaagcctAGAAAAACCGAGACTCTTTTCAGttcctattttcaaaaa
gtaaataaaaatgcGTGGGTGTGTGTGAGAGAGAAAacattattcaaaaa
ataagagGCCTTTCGGGCCTTGTTGTATAACTGAAAAAATAGGAGAGAAA
TATATATGAATttaaaaatgatatatttgacaatgtAAAACTCAACACTG
TGCTTTTTTCCACTTTTTGTGAAAGTATGCCAAGAATTTTCACATCAATT
GATTAAACGCCCTAGTTAACGCCTGCGCTATTACACCCCTCGAAGAGATG
CGTCCAAGAGGGAAAAGAAGTCTGAGAATGAGATTGTCTTTTCCATTAAA
GGTGTTTGAAAAATCACGTGATGTACGATTCATCGCATGACCATCTGCTG
CGAAACTTCTAATGTTTTGGTCACGTGATATAAGCCGTTTCGCCTAAATG
AAAAACCACATCGGCGAAAAATGCGTTTATTTAGCTCAAAACTCAAAGCT
GCAAGATTTTCCGAGATGGCTGACCGATATCTTAAAATGACTTGATGGAT
ACGCCCTAGCCGACTTTCAGAACATACAACATTATAAAGATCATTTATgt
agttttttgtttaaaaaacaaGAGTTCAATGTTGTCTTGTGTTGGAATAA
TACTGGCTTTGGACTATAACCAGTAAATTGCTTTTAGAGAGAGGTATTCA
TCTGGAGTGATAGCTCACTATTGGAGAGCATTTTTGTGATATACTTTCTA
TTGCAAGATCGTCTTTTAATTATCAACATTTAAAATGCCTATGGATGGTG
GATGCTGCCTCACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATGAA
ATTGAAAGGCAGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTGAA
ACTGTTATTATTAGGTTAGTTAAGAACGATATCTCTGTTTGTGTCTGGTG
TCCTATTCAAACCTAGTTTAAATAGTCTAGGNTAGAGAGAGGTATTCATC
TGGAGTGATAGCTCACTCACTATTGGAGAGCAATTTTGTGATATACTTTC
TATTGCAAGATCGTCTTTTAATTATCAACATTTAAAATGCCTATGGATGG
TGGATGCTGCCTCACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATG
AAATTGAAAGGCAGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTG
AAACTGTTATTATTAGGTTAGTTAAGAACGATATCACTGTTTGTGTCTGG
TGTCCTATTCAAACCTAGTTTAAATAGTCTAGGGTTGTCGAGGTTGCTGT
TTCGTGATTTACTTGGGTTTCcttctttgtcttttacaaTGGATCTCAAA
TTTTAGAACTGCCATGAAGTGGCACTTTGAGTACTTTATATACCAAACAA
ATTTCAACTTCTATCAAGAATTTTGTAAAGGGATGCAATGCTCCAGGCGC
AGTCATGTCTAATGGGATTGGTAATATCGTATAATATTGATAAGTAATTA
TTTTATTGATTCTGATAAAGAAATTCATTTACAGTAAGTTGCGTTATTAA
GTTTGCTTACTGTTGAATGTTCTATTTCCACAAATGCTAATCTAATGCCC
GGGGATGGAGGTTGCTAGATTTGTGAGATAACGTTTGACTACCGTagctt
ggtctaatgtcgacacccctcctctagttctgacaccctttttataag Run BLAST on NCBI transcript from alignment at scaffold_242:1337005..1338702- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054397 ID=TCONS_00054397|Name=TCONS_00054397|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at scaffold_242:1337005..1338702- (Clytia hemisphaerica)
TTAAAAAGCCTAGAAAAACCGAGACTCTTTTCAGTTCCTATTTTCAAAAA
GTAAATAAAAATGCGTGGGTGTGTGTGAGAGAGAAAACATTATTCAAAAA
ATAAGAGGCCTTTCGGGCCTTGTTGTATAACTGAAAAAATAGGAGAGAAA
TATATATGAATTTAAAAATGATATATTTGACAATGTAAAACTCAACACTG
TGCTTTTTTCCACTTTTTGTGAAAGTATGCCAAGAATTTTCACATCAATT
GATTAAACGCCCTAGTTAACGCCTGCGCTATTACACCCCTCGAAGAGATG
CGTCCAAGAGGGAAAAGAAGTCTGAGAATGAGATTGTCTTTTCCATTAAA
GGTGTTTGAAAAATCACGTGATGTACGATTCATCGCATGACCATCTGCTG
CGAAACTTCTAATGTTTTGGTCACGTGATATAAGCCGTTTCGCCTAAATG
AAAAACCACATCGGCGAAAAATGCGTTTATTTAGCTCAAAACTCAAAGCT
GCAAGATTTTCCGAGATGGCTGACCGATATCTTAAAATGACTTGATGGAT
ACGCCCTAGCCGACTTTCAGAACATACAACATTATAAAGATCATTTATGT
AGTTTTTTGTTTAAAAAACAAGAGTTCAATGTTGTCTTGTGTTGGAATAA
TACTGGCTTTGGACTATAACCAGTAAATTGCTTTTAGAGAGAGGTATTCA
TCTGGAGTGATAGCTCACTATTGGAGAGCATTTTTGTGATATACTTTCTA
TTGCAAGATCGTCTTTTAATTATCAACATTTAAAATGCCTATGGATGGTG
GATGCTGCCTCACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATGAA
ATTGAAAGGCAGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTGAA
ACTGTTATTATTAGGTTAGTTAAGAACGATATCTCTGTTTGTGTCTGGTG
TCCTATTCAAACCTAGTTTAAATAGTCTAGGNTAGAGAGAGGTATTCATC
TGGAGTGATAGCTCACTCACTATTGGAGAGCAATTTTGTGATATACTTTC
TATTGCAAGATCGTCTTTTAATTATCAACATTTAAAATGCCTATGGATGG
TGGATGCTGCCTCACTGAAGAGGCCAAAGAACAGAAAAGAATTAATGATG
AAATTGAAAGGCAGTTGAGGAGGGACAAACGTGATCAAAGACGTGAACTG
AAACTGTTATTATTAGGTTAGTTAAGAACGATATCACTGTTTGTGTCTGG
TGTCCTATTCAAACCTAGTTTAAATAGTCTAGGGTTGTCGAGGTTGCTGT
TTCGTGATTTACTTGGGTTTCCTTCTTTGTCTTTTACAATGGATCTCAAA
TTTTAGAACTGCCATGAAGTGGCACTTTGAGTACTTTATATACCAAACAA
ATTTCAACTTCTATCAAGAATTTTGTAAAGGGATGCAATGCTCCAGGCGC
AGTCATGTCTAATGGGATTGGTAATATCGTATAATATTGATAAGTAATTA
TTTTATTGATTCTGATAAAGAAATTCATTTACAGTAAGTTGCGTTATTAA
GTTTGCTTACTGTTGAATGTTCTATTTCCACAAATGCTAATCTAATGCCC
GGGGATGGAGGTTGCTAGATTTGTGAGATAACGTTTGACTACCGTAGCTT
GGTCTAATGTCGACACCCCTCCTCTAGTTCTGACACCCTTTTTATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054397-exon-scaffold_242-1575043694:1337005..1338702 | TCONS_00054397-exon-scaffold_242-1575043694:1337005..1338702 | Clytia hemisphaerica | exon |
| TCONS_00054397-exon-scaffold_242-1510915933:1337005..1338702 | TCONS_00054397-exon-scaffold_242-1510915933:1337005..1338702 | Clytia hemisphaerica | exon |
| TCONS_00054397-exon-scaffold_242-1491911889:1337005..1338702 | TCONS_00054397-exon-scaffold_242-1491911889:1337005..1338702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1337005..1338702 - |
Blast
The following BLAST results are available for this feature:
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