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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054394 ID=TCONS_00054394|Name=TCONS_00054394|organism=Clytia hemisphaerica|type=transcript|length=1867bp
CcaaatttattttgatgtgGCGAGAGCATCGGAGATTTGGTGGCTGTATT
TGGTGGCTGCTTTTGAATCGGAAGTTTGTGGTTTTGATTCGAAGATTGAT
CAGTTTGATCTTTGTCTTTAGTATGGCTGCTCTGCTGTTGGATTGGAGGT
TTGTGGTCCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTTTAGTATG
GCTGTCCTGCTGTTGAATTGGAAGTTTGTGGTTCTGGTTCGAAGATTGAT
CAGTTTGATCTTTGTCTTTAGTATGGCTGTCCTGCTGTTGAATTGAAAGT
TTGTGGCTCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTTTANtaga
tagtttttgaaatttttctcttattttccttcacaaaaagtttttttgtt
gctagatatctttgaatctgtacccaatagaacacttgaactaattttgg
acgtattttaggggtattttgtggaaaaatAGTTTTCNCTCTGGTTCGAA
GATTGATCAGTTTGATCTGTGTCTTTAGTATGGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGGTTCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTT
TAGTATGGCTGTCTTGCTGTTGAATTGGAAGTTTGTGGTTCTGGTTCGGA
GATTGATCAGTTTGATCTTTGTCTTTAGTATAGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGGCTCTGGTTCGAAGATTGATCAGTTTGATCTTTGTCTT
TAATTTGGCTGTCCTGCTGTTGGATTGGAAGTTTGTGGTTCTGGTTCGAA
GATTGATCAGTTTGACGTTTGTCCTTAACTTGGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGATTTTGGTTCGAAGATTGATCAGTTTGACGCTTGTCTT
TAACTTGGATTGGAATTTTTTGGTTCGGGTTCGAAGATTGATCAGTTTGA
CACTTGTCTTTAGTATGGCTGTCCTGCTGTTGGATTGGAAGTTGACGATT
TTCATTGGATGATTGATCGGTTATGTCATCTTCCATTTTTGTTAGCACTT
TACGTTTTAAAGCTTCCTTCACACTCTCTAATattttttcgacttcaagt
GATTGTCTAGTGATAGCATCCAGGCTTTCGctcgaatttggaaaagttgt
AAACAAAAAGTAACCTTGATCATGCATTTTCAAGTTCCTCAGATGTTTTT
GTTTCTCTTCTAATAATTCAAGTTTCAATCCATCAAAAGATGTTAGATCT
TCACCATCATCATTGAATAAAGAGTTAAAATACTCAAAATCACCGTATGA
GAGCCTTCGTAAAATATCgaccaacatttttttataCGTAAGGAATTCGT
CTTCATGAAGAGTCAGAGATGCTGACAAAATTCTTGCTTTGAGACCCAAC
ACAGCCATTATTGAGCTGGTCATGTTAAGATATTGGTCAATAATTGAATC
GTCCTTTGACTCTTTAACAATTGAAAGTAGCTTAGGTTTTAACTTTGATT
TCTCCAAGATGAGAAGTGATATAGCCATGACATCTAATCTCGCAATGATT
GGTTTAGTATCGACCAGCGAACTCGGCTCTACATTTTTGGCAAGGATGTC
TGATTGATGGTTGAAAGAATGCGTCACTTTCTCTTGAATGCCaacaagaa
tttcattcaactCAACAGCTTTACATGATTTTGGGAAATCACCAAATTGC
GGATTGTAAAGTGTGTCCAGGAGAGTTGATTTAAGACATACTTCAAATGG
TATGGAAATCTGGAACCACCATCTTGCTGGCTCGTGTGGATGAGCGAGAC
TTTTTGAATCATCTAGGTTTTGATCCATTGTTTTTCCTTAAAACATGAAC
AACATTGATTGTTTGTT Run BLAST on NCBI transcript from alignment at scaffold_242:1314898..1316914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054394 ID=TCONS_00054394|Name=TCONS_00054394|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at scaffold_242:1314898..1316914- (Clytia hemisphaerica)
CCAAATTTATTTTGATGTGGCGAGAGCATCGGAGATTTGGTGGCTGTATT
TGGTGGCTGCTTTTGAATCGGAAGTTTGTGGTTTTGATTCGAAGATTGAT
CAGTTTGATCTTTGTCTTTAGTATGGCTGCTCTGCTGTTGGATTGGAGGT
TTGTGGTCCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTTTAGTATG
GCTGTCCTGCTGTTGAATTGGAAGTTTGTGGTTCTGGTTCGAAGATTGAT
CAGTTTGATCTTTGTCTTTAGTATGGCTGTCCTGCTGTTGAATTGAAAGT
TTGTGGCTCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTTTANTAGA
TAGTTTTTGAAATTTTTCTCTTATTTTCCTTCACAAAAAGTTTTTTTGTT
GCTAGATATCTTTGAATCTGTACCCAATAGAACACTTGAACTAATTTTGG
ACGTATTTTAGGGGTATTTTGTGGAAAAATAGTTTTCNCTCTGGTTCGAA
GATTGATCAGTTTGATCTGTGTCTTTAGTATGGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGGTTCTGGTTCGAAGATTGATCAGTTTGATCTGTGTCTT
TAGTATGGCTGTCTTGCTGTTGAATTGGAAGTTTGTGGTTCTGGTTCGGA
GATTGATCAGTTTGATCTTTGTCTTTAGTATAGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGGCTCTGGTTCGAAGATTGATCAGTTTGATCTTTGTCTT
TAATATGGCTGTCCTGCTGTTGAATTGAAAGTTTGTGATTTTGGTTCGAA
GATTGATCAGTTTGACGTTTGTCCTTAGTATAGCTGCCCTGCTGTTGGAT
TGGAAGTTTGTGGTTCTGGTTCGAAGATTGATCAGTTTGACGTTTGTCCT
TAACTTGGCTGTCCTGCTGTTGGATTGGAAGTTTGTGGTTCTGGTTCGAA
GATTGATCAGTTTGACGTTTGTCCTTAACTTGGCTGTCCTGCTGTTGGAT
TGGAAGTTTGTGATTTTGGTTCGAAGATTGATCAGTTTGACGCTTGTCTT
TAACTTGGATTGGAATTTTTTGGTTCGGGTTCGAAGATTGATCAGTTTGA
CACTTGTCTTTAGTATGGCTGTCCTGCTGTTGGATTGGAAGTTGACGATT
TTCATTGGATGATTGATCGGTTATGTCATCTTCCATTTTTGTTAGCACTT
TACGTTTTAAAGCTTCCTTCACACTCTCTAATATTTTTTCGACTTCAAGT
GATTGTCTAGTGATAGCATCCAGGCTTTCGCTCGAATTTGGAAAAGTTGT
AAACAAAAAGTAACCTTGATCATGCATTTTCAAGTTCCTCAGATGTTTTT
GTTTCTCTTCTAATAATTCAAGTTTCAATCCATCAAAAGATGTTAGATCT
TCACCATCATCATTGAATAAAGAGTTAAAATACTCAAAATCACCGTATGA
GAGCCTTCGTAAAATATCGACCAACATTTTTTTATACGTAAGGAATTCGT
CTTCATGAAGAGTCAGAGATGCTGACAAAATTCTTGCTTTGAGACCCAAC
ACAGCCATTATTGAGCTGGTCATGTTAAGATATTGGTCAATAATTGAATC
GTCCTTTGACTCTTTAACAATTGAAAGTAGCTTAGGTTTTAACTTTGATT
TCTCCAAGATGAGAAGTGATATAGCCATGACATCTAATCTCGCAATGATT
GGTTTAGTATCGACCAGCGAACTCGGCTCTACATTTTTGGCAAGGATGTC
TGATTGATGGTTGAAAGAATGCGTCACTTTCTCTTGAATGCCAACAAGAA
TTTCATTCAACTCAACAGCTTTACATGATTTTGGGAAATCACCAAATTGC
GGATTGTAAAGTGTGTCCAGGAGAGTTGATTTAAGACATACTTCAAATGG
TATGGAAATCTGGAACCACCATCTTGCTGGCTCGTGTGGATGAGCGAGAC
TTTTTGAATCATCTAGGTTTTGATCCATTGTTTTTCCTTAAAACATGAAC
AACATTGATTGTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054394-exon-scaffold_242-1575043694:1316161..1316914 | TCONS_00054394-exon-scaffold_242-1575043694:1316161..1316914 | Clytia hemisphaerica | exon |
| TCONS_00054394-exon-scaffold_242-1575043694:1314898..1316010 | TCONS_00054394-exon-scaffold_242-1575043694:1314898..1316010 | Clytia hemisphaerica | exon |
| TCONS_00054394-exon-scaffold_242-1510915933:1316161..1316914 | TCONS_00054394-exon-scaffold_242-1510915933:1316161..1316914 | Clytia hemisphaerica | exon |
| TCONS_00054394-exon-scaffold_242-1510915933:1314898..1316010 | TCONS_00054394-exon-scaffold_242-1510915933:1314898..1316010 | Clytia hemisphaerica | exon |
| TCONS_00054394-exon-scaffold_242-1491911889:1316161..1316914 | TCONS_00054394-exon-scaffold_242-1491911889:1316161..1316914 | Clytia hemisphaerica | exon |
| TCONS_00054394-exon-scaffold_242-1491911889:1314898..1316010 | TCONS_00054394-exon-scaffold_242-1491911889:1314898..1316010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1314898..1316914 - |
Blast
The following BLAST results are available for this feature:
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