TCONS_00054390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054390
Unique NameTCONS_00054390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054390 ID=TCONS_00054390|Name=TCONS_00054390|organism=Clytia hemisphaerica|type=transcript|length=2906bp
GTGCAAGTTGCTCGGGATACACCATTGCCATTATCATGTAGACGATTGAG
AGCACTTATAGTAAAATTTGGGTATATTTTGAACACTTTTACCATATTAC
TTTTTTGGTTTTAACAAAACAATATTATGTACACgttttcaaaatgagaa
aaacactaacttttaaatttataaaaaaatttgaaaaaagtatgaaaaat
ggAAATGAAATATCCTGCCTATGAGCTCAAAGTAGAATTTCGCTAAACCT
TTAGTCaacatttctaaaaattgcGAACCTTGAATTCAAAAGCAATTAGA
AATTATTTACAGCTTCGTCTAAATACTTCTTTATGGAACGGTATTTACCA
AACACTAAAAAGTTCAATTCAAACCTAGTTGATCTATCCCTGTCGCaaag
tttcaattcttttgagttgaaaaattgCTAATATAGAATAAAActctata
aaaataaaaaaaacatctatttaTCATATAACTATGAGAAACTAAAacta
aattttatattttggaCAGTTAAAGTTTTAATTTGGACATTTCGGACATA
CCAAAATAGTTTTGCATCGTTCACAACATACCCCTTGTACATTACCAGAT
GGTTTGTCTAACAATTTATGTTTCCACAGCAACGAGTTTGCCCATTCTTT
AGTAATAATTCCTTTAATGTTTCCAGCCTCTTTATGGTGTTTGGTTGCCA
TGATATTTTCTGCAACAGCAATCACAAAATTCTCACTTAGTTCAATTTGT
GAAGAATGAAATTGTTTAAGTTGTGAGACAACTTCACCTTCAATTAAAGT
TGATATTGATCGACGGCTTGGCTTGCGCTCGATGGTCTCGGTAGCTGGGA
TACCTCCTCCCTTCTCTAAAAGTTCTCTATATTTATTACGAAACGTGCGT
ACAACGCTTTCGTTCAAGCGTGGAAATTGTTCTCTGTATACTTTCACTGT
AGCACCTAATCCGATATCGTTGCAAAGTTTCCCGATATTATACCGATCTT
CGGGTGTATATTTTTGGTATTTGAATCGTTTGCTTCGCCCACTTTGTGGG
TTTATACTGCCAATCGGTTTCCCAATCAAATCTTTGCGATCATAAGGATA
CTCTACAGCCGCGTAACCATTTATGCGTGGTGGTATTACGTCATATTCAC
GGAGTCGGGCGTTTTCGCTGATCGAGCGATGGAGGTGACCGTTGAAAGTC
GGCGGTGGTGAATGATGTCTAGGTGAGTGTGGTCGCGGTCTTGGATAGTG
TATGATAGGCGGTGCAATCACGGATGGATGTGATGAAATGGCGGAATTTG
CGTTATGTGGAATGCTCGGAGAAGAGCGCATTGATGGTGATCTATTGTGA
GGTGGAGATCGAGATCGATGGCGGGGCACGGGTGGCGAGCGTGAGCGATG
ACGTTCAACACCTTCTTCTTTTTTATGAGGTGGATGTTTGAATGGTCTGT
AAGGTGGAGATTCACTTTCACTTCGTGGTGAACGTGCATAAGGAGGAGAA
AGTCTTCTTTCTTCTGGTGGATGATGTTGTTTTGGTGAAACAGGAGGCGA
ACTGTGATTAGATGTTCGCTCTTCATCGCCACGTGGTGAAACCATGCCAT
TCGTTTTGGCGGAACCTGTCGAACCTGGTCCTGTCATTTGATCACCTTCT
AAGACAAACACTTGTGGTTGCGTAGGATAATCATGCACATGCGTGTTGGG
TGGTGATCGATATCCTGCGCGTCTCTGTTGAAGGTCTTGCTCCTGTTTGT
GGCGTTGATATTGTTTgtggaaatcgaaaatgatcgatTCGCTGATCCCA
GGGTATTCTTTATGGAACTCTTGCAATGCTTTCATGACGCCATGATGCGA
GCAATATCGACCGATTCTTAATTGATCTTCTAATGTCATCTTCATGAATC
GTGGGTGATCcttttcaatttcatgaaaGGCCGGGCGTCTGTGGGTGCTT
TCTAATGGGAATGCCGGGCGTTCGCCATTTCGTTGATGATACCGTGCATA
TTCGTCCTTTACAACTTGTGTATTGAGCGGAGGTGATATCTGTCCATTGT
ATGGTTTATTGGTTTCATCGGTGACTTTGTACTTGCGTGGGCGACCACGA
GGAGGAGCTGTGTAACTGTTCTGTAGTTCTTTCTGTCTCCTTTGCTCGAA
CTCATAGACAGCTGATTCCCCGATCATCTGCTTGTATTTATCACGAAAAC
CTCTTGTCACACTTTCACTCATCTCTGGGTAGCGACCTTGAAAGGCTTTA
CGTGCAGCAGCTGGTCCGTGCTCAAAACAGTATTTGCCGATAGCTATTCG
GTCTTCAGGCGTGTACTTTTGATATTTCTTTCGTTTGCCACGTTTGTGTG
GGATTTTAACGGTGTTGTTGTTTGAGGTTCCATCATGTGAACTGGAGTCA
TCATCGTCCATATCACGGGATAAATCTTCTGCTCCTTCTCCTAACATGCT
TGGTCGTGCTACAAATGTCGGTTTCGATAGCATCGAAGGTCGATCGGATA
ACATGGAAGGTCGCTCGACCAGAGATGGAGAATCACGTGACGTTTGGTCT
GCGTCTTCAATGTTGTCGATATGATTCGTTGATTGGTTCTCTTCAACTTC
GTCAGAATCAATGTAATGATCGTCAATGACGGCGATTTGTGGTGGTGACG
GAGTCGATAAATCACCATTCAACATGGATGGTAATGCACTTAATGCAATG
GTTGCTGCCGACATTGTGCTTTGTTGTCATAAGTTGGTGCGTGTTGTGTT
ATTGTCgtaatttgttgttttcttttgcTGTGAAcgagaaaaaaagagaa
ttaCGTCAGAAAAGTAGAATTGCGTTCAAAATCTCCACATCTTTTGGCAG
CAGGCATGAATATCTGAAGAAAGTGTCACCCTCAACCAAGGCCACAcata
aaattg
Run BLAST on NCBI

transcript from alignment at scaffold_242:1183439..1187082-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054390 ID=TCONS_00054390|Name=TCONS_00054390|organism=Clytia hemisphaerica|type=transcript|length=3644bp|location=Sequence derived from alignment at scaffold_242:1183439..1187082- (Clytia hemisphaerica)
GTGCAAGTTGCTCGGGATACACCATTGCCATTATCATGTAGACGATTGAG
AGCACTTATAGTAAAATTTGGGTATATTTTGAACACTTTTACCATATTAC
TTTTTTGGTTTTAACAAAACAATATTATGTACACGTTTTCAAAATGAGAA
AAACACTAACTTTTAAATTTATAAAAAAATTTGAAAAAAGTATGAAAAAT
GGAAATGAAATATCCTGCCTATGAGCTCAAAGTAGAATTTCGCTAAACCT
TTAGTCAACATTTCTAAAAATTGCGAACCTTGAATTCAAAAGCAATTAGA
AATTATTTACAGCTTCGTCTAAATACTTCTTTATGGAACGGTATTTACCA
AACACTAAAAAGTTCAATTCAAACCTAGTTGATCTATCCCTGTCGCAAAG
TTTCAATTCTTTTGAGTTGAAAAATTGCTAATATAGAATAAAACTCTATA
AAAATAAAAAAAACATCTATTTATCATATAACTATGAGAAACTAAAACTA
AATTTTATATTTTGGACAGTTAAAGTTTTAATTTGGACATTTCGGACATA
CCAAAATAGTTTTGCATCGTTCACAACATACCCCTTGTACATTACCAGAT
GGTTTGTCTAACAATTTATGTTTCCACAGCAACGAGTTTGCCCATTCTTT
AGTAATAATTCCTTTAATGTTTCCAGCCTCTTTATGGTGTTTGGTTGCCA
TGATATTTTCTGCAACAGCAATCACAAAATTCTCACTTAGTTCAATTTGT
GAAGAATGAAATTGTTTAAGTTGTGAGACAACTTCACCTTCAATTAAAGT
TGATATTGATCGACGGCTTGGCTTGCGCTCGATGGTCTCGGTAGCTGGGA
TACCTCCTCCCTTCTCTAAAAGTTCTCTATATTTATTACGAAACGTGCGT
ACAACGCTTTCGTTCAAGCGTGGAAATTGTTCTCTGTATACTTTCACTGT
AGCACCTAATCCGATATCGTTGCAAAGTTTCCCGATATTATACCGATCTT
CGGGTGTATATTTTTGGTATTTGAATCGTTTGCTTCGCCCACTTTGTGGG
TTTATACTGCCAATCGGTTTCCCAATCAAATCTTTGCGATCATAAGGATA
CTCTACAGCCGCGTAACCATTTATGCGTGGTGGTATTACGTCATATTCAC
GGAGTCGGGCGTTTTCGCTGATCGAGCGATGGAGGTGACCGTTGAAAGTC
GGCGGTGGTGAATGATGTCTAGGTGAGTGTGGTCGCGGTCTTGGATAGTG
TATGATAGGCGGTGCAATCACGGATGGATGTGATGAAATGGCGGAATTTG
CGTTATGTGGAATGCTCGGAGAAGAGCGCATTGATGGTGATCTATTGTGA
GGTGGAGATCGAGATCGATGGCGGGGCACGGGTGGCGAGCGTGAGCGATG
ACGTTCAACACCTTCTTCTTTTTTATGAGGTGGATGTTTGAATGGTCTGT
AAGGTGGAGATTCACTTTCACTTCGTGGTGAACGTGCATAAGGAGGAGAA
AGTCTTCTTTCTTCTGGTGGATGATGTTGTTTTGGTGAAACAGGAGGCGA
ACTGTGATTGGATGCTCGCTCTTCATCGCCACTTGGTGAAACCATGCCAT
TCGTTTTGGCGGAACCTGTCGGACCTGGTCCTGCCATTTGATCACCTTCT
AAGACAAACACTTGTGGTTGTGTAGGATAATCATGCACATGCGTGTTGGG
TGGTGATCGATATCCTGCGCGTCTCTGTTGAAGGTCTTGCTCCTGTTTGT
GGCGTTGATATTGTTTGTGGAAATCGAAAATGATCGATTCGCTGATCCCA
GGGTATTCTTTATGGAACTCTTGCAATGCTTTCATGACGCCATGATGCGN
GTAACCATTTATGCGTGGTGGTATTACGTCATATTCACGGAGTCGGGCGT
TTTCGCTAATCGAGCGATGGAGGTGACCGTTGAAAGTCGGCGGTGGTGAA
TGATGTCTAGGTGAGTGTGGCCGCGGTCTTGGATAGTGTATGATAGGTGG
TGCAATTACGGATGGATGTGATGTAATGGCGGAATTTGCGTTATGTGGAA
TGCTCGGAGAAGAGCGCATTGATGGTGATCTATTGTGAGGCGGAGATCGA
GATCGATGGCGGGGCACGGGTGGCGAGCGTGAGCGATGACGTTCAACACC
TTCTTCTTTTTGATGAGGTGGATGTTCGAATGGTCTGTAAGGTGGAGACT
CACTTTCACTTCGTGGTGAACGTGCATAAGGAGGAGAAAGTCTTCTTTCT
TCTGGTGGATGATGTTGTTTTGGTGAAACAGAAGGCGAACTGTGATTAGA
TGTTCGCTCTTCATCGCCACGTGGTGAAACCATGCCATTCGTTTTGGCGG
AACCTGTCGAACCTGGTCCTGTCATTTGATCACCTTCTAAGACAAACACT
TGTGGTTGCGTAGGATAATCATGCACATGCGTGTTGGGTGGTGATCGATA
TCCTGCGCGTCTCTGTTGAAGGTCTTGCTCCTGTTTGTGGCGTTGATATT
GTTTGTGGAAATCGAAAATGATCGATTCGCTGATCCCAGGGTATTCTTTA
TGGAACTCTTGCAATGCTTTCATGACGCCATGATGCGAGCAATATCGACC
GATTCTTAATTGATCTTCTAATGTCATCTTCATGAATCGTGGGTGATCCT
TTTCAATTTCATGAAAGGCCGGGCGTCTGTGGGTGCTTTCTAATGGGAAT
GCCGGGCGTTCGCCATTTCGTTGATGATACCGTGCATATTCGTCCTTTAC
AACTTGTGTATTGAGCGGAGGTGATATCTGTCCATTGTATGGTTTATTGG
TTTCATCGGTGACTTTGTACTTGCGTGGGCGACCACGAGGAGGAGCTGTG
TAACTGTTCTGTAGTTCTTTCTGTCTCCTTTGCTCGAACTCATAGACAGC
TGATTCCCCGATCATCTGCTTGTATTTATCACGAAAACCTCTTGTCACAC
TTTCACTCATCTCTGGGTAGCGACCTTGAAAGGCTTTACGTGCAGCAGCT
GGTCCGTGCTCAAAACAGTATTTGCCGATAGCTATTCGGTCTTCAGGCGT
GTACTTTTGATATTTCTTTCGTTTGCCACGTTTGTGTGGGATTTTAACGG
TGTTGTTGTTTGAGGTTCCATCATGTGAACTGGAGTCATCATCGTCCATA
TCACGGGATAAATCTTCTGCTCCTTCTCCTAACATGCTTGGTCGTGCTAC
AAATGTCGGTTTCGATAGCATCGAAGGTCGATCGGATAACATGGAAGGTC
GCTCGACCAGAGATGGAGAATCACGTGACGTTTGGTCTGCGTCTTCAATG
TTGTCGATATGATTCGTTGATTGGTTCTCTTCAACTTCGTCAGAATCAAT
GTAATGATCGTCAATGACGGCGATTTGTGGTGGTGACGGAGTCGATAAAT
CACCATTCAACATGGATGGTAATGCACTTAATGCAATGGTTGCTGCCGAC
ATTGTGCTTTGTTGTCATAAGTTGGTGCGTGTTGTGTTATTGTCGTAATT
TGTTGTTTTCTTTTGCTGTGAACGAGAAAAAAAGAGAATTACGTCAGAAA
AGTAGAATTGCGTTCAAAATCTCCACATCTTTTGGCAGCAGGCATGAATA
TCTGAAGAAAGTGTCACCCTCAACCAAGGCCACACATAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034288XLOC_034288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054390-exon-scaffold_242-1575043694:1185537..1187082TCONS_00054390-exon-scaffold_242-1575043694:1185537..1187082Clytia hemisphaericaexon
TCONS_00054390-exon-scaffold_242-1575043694:1183439..1184798TCONS_00054390-exon-scaffold_242-1575043694:1183439..1184798Clytia hemisphaericaexon
TCONS_00054390-exon-scaffold_242-1510915933:1185537..1187082TCONS_00054390-exon-scaffold_242-1510915933:1185537..1187082Clytia hemisphaericaexon
TCONS_00054390-exon-scaffold_242-1510915933:1183439..1184798TCONS_00054390-exon-scaffold_242-1510915933:1183439..1184798Clytia hemisphaericaexon
TCONS_00054390-exon-scaffold_242-1491911889:1185537..1187082TCONS_00054390-exon-scaffold_242-1491911889:1185537..1187082Clytia hemisphaericaexon
TCONS_00054390-exon-scaffold_242-1491911889:1183439..1184798TCONS_00054390-exon-scaffold_242-1491911889:1183439..1184798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1183439..1187082 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.732423	1.09299	0.327116	0.200468	0.124177	0	1.37293	1.7506	0.458093	0.35985	0.588633	0	1.41166	2.20785	0.386621	0.329665	2.4788	1.49575	0.930751	0.178005	3.65942	2.39573	1.96062	1.78103	2.36928	5.5994	2.20037	1.65997	1.22622	1.16575
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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