TCONS_00054389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054389
Unique NameTCONS_00054389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054389 ID=TCONS_00054389|Name=TCONS_00054389|organism=Clytia hemisphaerica|type=transcript|length=469bp
CAATTCTTGGCAGCAATTTTCCTCTTGCCAGATGCTGTGGTGCATTCATT
GACCATTCCATACCCATCCATCAACACTACGACTCTTAACACCGCCAATG
AAACATCATTCAATAACCAAACCTCTGTTCAACAGATGTCTTGGGAAGAA
GCTGCTTCTTTGGCAAGTTTTTATACTGTAGTTGCAGTTATCCCTGGCTT
TATTGTTCTCTACTTGTTATGTATTAACTGTCCGAAATTCTTGAACACAA
TGTTAGACCATGCTGTATAACTGATAAGATTCGAAGTAATGGTTTATAAA
CATATACTGTATGTCTGTTTGGAGCGTGTGATTTACGTTTGATTTACTCA
TCCGATATCCGCTCAAATGATAGAAGaatttgaaaggaaaataaTCTACA
TACAGAGACAGCCCTTGGAAGAAACGGGGAAAAGACTAAGCTATAGAAGT
GGTCCTTGATGTTCATGAT
Run BLAST on NCBI

transcript from alignment at scaffold_242:1130673..1131472-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054389 ID=TCONS_00054389|Name=TCONS_00054389|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_242:1130673..1131472- (Clytia hemisphaerica)
CAATTCTTGGCAGCAATTTTCCTCTTGCCAGGTATGTTTCGTTGGTATTT
TGACTATTACTTAAAATGCTTTGAAATTCTCAATTATATTGCTTAGGTCT
GTTTCTTCTATATTTGAAATGATTGCAGGAACATTACGGATCTGCACCGA
TGTAAAATTCTGGAAGCTTTGGAAGATATGTGTTCAAATTTATTTGACAT
TTTCCCAAAAATGTTCATATTAAGTGACTGGTTATCATGGGATAAAATGG
ATGTAGTTTTATTTTGCTAAGATATTTTATTCGATGTTATTTTGGTCCCA
AGTTGTCGAATTTTCGAACGGCGGATAGTTTTATTAAATAAAGAATCTCT
ATCTTTCCTTAGATGCTGTGGTGCATTCATTGACCATTCCATACCCATCC
ATCAACACTACGACTCTTAACACCGCCAATGAAACATCATTCAATAACCA
AACCTCTGTTCAACAGATGTCTTGGGAAGAAGCTGCTTCTTTGGCAAGTT
TTTATACTGTAGTTGCAGTTATCCCTGGCTTTATTGTTCTCTACTTGTTA
TGTATTAACTGTCCGAAATTCTTGAACACAATGTTAGACCATGCTGTATA
ACTGATAAGATTCGAAGTAATGGTTTATAAACATATACTGTATGTCTGTT
TGGAGCGTGTGATTTACGTTTGATTTACTCATCCGATATCCGCTCAAATG
ATAGAAGAATTTGAAAGGAAAATAATCTACATACAGAGACAGCCCTTGGA
AGAAACGGGGAAAAGACTAAGCTATAGAAGTGGTCCTTGATGTTCATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034287XLOC_034287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054389-exon-scaffold_242-1575043694:1131442..1131472TCONS_00054389-exon-scaffold_242-1575043694:1131442..1131472Clytia hemisphaericaexon
TCONS_00054389-exon-scaffold_242-1575043694:1130673..1131110TCONS_00054389-exon-scaffold_242-1575043694:1130673..1131110Clytia hemisphaericaexon
TCONS_00054389-exon-scaffold_242-1510915933:1131442..1131472TCONS_00054389-exon-scaffold_242-1510915933:1131442..1131472Clytia hemisphaericaexon
TCONS_00054389-exon-scaffold_242-1510915933:1130673..1131110TCONS_00054389-exon-scaffold_242-1510915933:1130673..1131110Clytia hemisphaericaexon
TCONS_00054389-exon-scaffold_242-1491911889:1131442..1131472TCONS_00054389-exon-scaffold_242-1491911889:1131442..1131472Clytia hemisphaericaexon
TCONS_00054389-exon-scaffold_242-1491911889:1130673..1131110TCONS_00054389-exon-scaffold_242-1491911889:1130673..1131110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1130673..1131472 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.154499	0	0	0	0.175432	0.328474	0.114986	0	0	0	14.1571	19.0376	0	0	0.102435	0.314977	23.3534	20.0359	1.05544	0.386106	0.469362	0.711198	1.31853	1.17676	0	0	0.151452	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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