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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054380 ID=TCONS_00054380|Name=TCONS_00054380|organism=Clytia hemisphaerica|type=transcript|length=4077bpRun BLAST on NCBI protein sequence of TCONS_00054380-protein >TCONS_00054380-protein ID=TCONS_00054380-protein|Name=TCONS_00054380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp MRSNGESESSENGEAILEHKNGVSSNDTPEKFAALKERNREKITRKRLNKRun BLAST on NCBI transcript from alignment at scaffold_242:1005588..1020710- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054380 ID=TCONS_00054380|Name=TCONS_00054380|organism=Clytia hemisphaerica|type=transcript|length=15123bp|location=Sequence derived from alignment at scaffold_242:1005588..1020710- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:1005588..1020710- >TCONS_00054380 ID=TCONS_00054380|Name=TCONS_00054380|organism=Clytia hemisphaerica|type=CDS|length=27180bp|location=Sequence derived from alignment at scaffold_242:1005588..1020710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054380 vs. Swiss-Prot (Human)
Match: WDR26 (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3) HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0 Identity = 322/560 (57.50%), Postives = 423/560 (75.54%), Query Frame = 1
Query: 436 PEKFAALKERNREKITRKRLNKFDEEVVRVIGQHLEKLGLHKTVECLLKESNCQLENSSASRFRAHCLKGDWNKAECVLKDLQPLL----------------TTQDCYLKMRFLILEQKFLELLEDGRAIEALHCLRQELTPLKYNVERIHELSGLLMSADIDELLKKSNWEGKTNGTRQHLINKLQAYLPPTVMLPPDRLETLIKQAFEHQKTNCLYHNSTLDQNLHSLSILSDHKCTRNMFPTETRQILSEHCDEVWFLRFSHDGKYLATGSKDTTVILWKVEDD--TLVKWRTLEGHSYGVSYISWSPNDTYIIACGPEDCCELWIWQVETGELKCRMSHSTEESLTCCAWYSDEKRFVTGGTRGQFYQCDLDGNILESWEGVRVVGLHVLND-RSVLAADTHMRIRSYNFDALVDKLLIQETHPIMSFVVSEDKTKALFNIASQGVNLWDIKDKVLIRKFRGVKQGYYMIHTCFGGLNNDFIASGSEDNQVYIWHHSRETPITTLNGHSQTVNCVHWNPTDPSMLASASDDGTVRIWRPA-----KDPSKACSTSD 2043
PE ++LK++ KRL++ DE+V+R+IGQHL LGL++TV+ L++ES C+LE+ SA++FR H ++GDW+KAE L +L+PL+ T ++M+FL+L+QK+LE LEDG+ +EAL LR ELTPLKYN ERIH LSG LM + ++L K+ WEGK +R L++KLQ YLPP+VMLPP RL+TL++QA E Q+ CLYHN+ LD NL S+S+L DH C+R FP T+QIL+EHC+EVWF +FS+DG LATGSKDTTVI+W+V+ D L +TLEGH+YGVSYI+WSP+D Y++ACGP+DC ELW+W V+TGEL+ +MS S E+SLT AW D KRFVTGG RGQFYQCDLDGN+L+SWEGVRV L L+D ++VLA+DTH RIR YNF+ L D+ ++QE HPIMSF +S++ AL N+A+QGV+LWD++D+VL+RK++GV QG+Y IH+CFGG N DFIASGSED++VYIWH E PI L GH++TVNCV WNP PSM+ASASDDGTVRIW PA ++ + CS+ D
Sbjct: 108 PELGSSLKKK-------KRLSQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD 660 The following BLAST results are available for this feature:
BLAST of TCONS_00054380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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