TCONS_00054343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054343
Unique NameTCONS_00054343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054343 ID=TCONS_00054343|Name=TCONS_00054343|organism=Clytia hemisphaerica|type=transcript|length=735bp
GGAAACTTACATTGTTTTGGATGTGGTTTGAAAGCATGTGGTTTGCAATG
TTTTCCTTTGCACACAGCAAAAGTACGTCGAACACAAACTGAGAATTTAC
GGCTGAATACTTGGTGTCGTGGACATCTTTGGCAAACAGCTCTGAGCTTT
CCATGAGCTCCTGGTGCACATTGAACAAAGACATCTGGTGTTCGGTGCTT
ATCTCCTAATCCAAAGATGGATCCCAAGGATGTACCATGACACAGTCTGT
CAGGACCTAGaaggattttaatttttttttgaagctTGCTCAGCTACTCA
TCAATACTACACCCCATGCTCGTACAGCTTATGTAACAACAAGCCAGATG
GAGCTCTCTTCGCATTAGACGAACACCGACCTGATGTTTTTGTTCAATGT
TCAAACGGAGCACCAATTTGCCAACGATGCCCACCTCACACTGAATTCAA
CAACAAATTCTCAGTTTGTGTCCGACGAACTGTTCCTGTATGTAAAGGTc
atggatgtaaaccacacaaACCACATAGGCCACATCCAGAACAATgCCCA
AAATCCTTGTGCGCTGATTACCCACACAGCGACTACGTTGTCTTCCGATA
CCCACACAAACCAACTTACTACGTTCAATGCGTTGCTGGAAGTCCATTCT
GCAGAAAATGCCCACATGGATTGATCTTTGACAACAAAGTCAAAGTTTGC
GTTTTCCCAACAGTCCAAAAACCACATGTCCCACA
Run BLAST on NCBI

transcript from alignment at scaffold_242:469830..474845-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054343 ID=TCONS_00054343|Name=TCONS_00054343|organism=Clytia hemisphaerica|type=transcript|length=5016bp|location=Sequence derived from alignment at scaffold_242:469830..474845- (Clytia hemisphaerica)
GGAAACTTACATTGTTTTGGATGTGGTTTGAAAGCATGTGGTTTGCAATG
TTTTCCTTTGCACACAGCAAAAGTACGTCGAACACAAACTGAGAATTTAC
GGCTGAATACTTGGTGTCGTGGACATCTTTGGCAAACAGCTCTGAGCTTT
CCATGAGCTCCTGGTGCACATTGAACAAAGACATCTGGTGTTCGGTGCTT
ATCTCCTAATCCAAAGATGGATCCCAAGGATGTACCATGACACAGTCTGT
CAGGACCTAGAAGGATTTTAATTTTTTTTTGAAGGTTTGAGACATTTGTT
TGCCGGGGGGGAACCATTTAGGCAAAATTGGAGCCGGGTATGTGCGAGCC
ATAACACTATCTTTTTTCACACCCTCGAATTCCCTAAAAGGGGTACAGAA
ACCATTAAAAAGCAAATGAGTCTCTGTAAGGGCTCCAAAGTTTATAAAAT
CGAAAATCGAATTCCAAAGGGTCATAAATTCTTGAAATTTAGACTAAAAG
GTCTCTTTTAAGGATGTCAAAAACGTCAAAAAATGGACAGCATTTTTGAA
ATTCAGATGGCTCGGAAAAACCTGTCATCTCGCAAGCCTAGTACCCTCCG
GGTTCGCAGGTCATCAGAAGTAAAAAATTTGCAAATTCAAAATTTCAATC
CAAATATTTCCAAATTTTGATAATTAGATGTAAGCTGATAGAAGAGAATA
TTGCAAAAAGATATTTAAATACTTACATGGGTAGTAGAATTCAGCTGAGC
AAACTAAAAAAACAAGAAAATAAAAATTAACGTCAAGATATATATAAAAT
ATCGAATTAAACTCTCGAGGCAGTTCATCATGTCTCTTCAAGCATCTCCA
AATCATGGTGGACGACAATTTTTCAAAAAAAAATTAGCCCCCTAGCTCAA
ACGCCTTTCCAGGACCCATGTCCAGCTTATCGTTGATTTGCAATACAAAA
TTTATTATCTTATTTTTAAAATCACGCGTCCAAGGAAAAAATTCATAAGT
CAATCATTGGAAGATTTAATCACTTGATCAAACTTACCAGCGATGATGGC
GATCAAGATGATGGTCTTCATTTTTGTTGTTTTGAGATCTTCTTGAACTT
GATTCAAAAGTTGAAGTGATGATCTCAAATGAAAACACCTACCCTATTTA
TACTCAATTTCACAAATCTGAAAATTGGTATTGAAATCATACCTCAATTA
AGTTCAATTAAATTTTTGGATTAATATAGGAAACTGCAGGTGTTACGAGG
AGTAAGTAAAACCAATTTCAATTTATTTATGTAATTTCCCTGAAGGCGTG
TTCTTCGTGTGTTCCAGACTTTGGTGACACGGAAATTGCAAGATTATTAC
ATTGTTTCTTTAGATATGAAAGCAGTAAATCCACTATTTGACAGATAAGG
GTGTGTTTGTATGTCCGTGTAATTTTACTTGACAGGAAGTCGGTGATCTA
GCAGTTGAACTTCATTCTCGTTTACTCTTATATAATACCTTTTTTTTGAA
ATCAAGTGAAAATACTCAGAAACTAAATTTAGTTCTATTTGAGCGAAGCG
TAAAACTTTGGTAAAACTGGTCACCTATATTTTGTGATTGATCCAGGCTT
TATCAAATGGTATTTTATGCAATTAAATCATCAAAGAATGGTGATTGTTC
TATGAACAATCGTTTATTTACAAACTATTCCCACTTATTTCATATTTAAG
CACACCCCCACTGGAAAATTTGGTCAAACTTTCATCAGCAGTGTAGGAAA
AATACCCTATAATTCCAGCACTCCAAGACAATATAATCTTTATTCCCATT
GGGATTTTGAAAATAATTTTTATCCCCTCTGTTGGAAGAAATTCAACCGG
GGCTTTGAGACAGGGGTGTTTATGCCAACCAACATTACCACCATGGTCAT
CTTTAGATTCATTAGAGATTTATAATCAAGCAGATGCGCCAGAATTCTCA
ATTCACTGGAACCGTTATCACCAACATCCTATTCACCAACTTGAACATCA
AGTTCACGAGAACCATCAGCTCCACCAGTAGATTTGACCAGAAACATAAA
ATCAAGCAGGAGACTCGCCGAAGCACAAAACTACTAGCAGATCAACAAGA
AACATAAATTCCACGTCGATAGATTCACCAGATCTATTAACCATCAGGCT
TACTAGAATTACCAGCACGACCCATGATGTTCTAAAATTACATAAGACCA
CAAAAATCATCAAAACCAACAAAATAACCTCCTCTTTTCTATTTACGGTA
GACCCGGTAAATCGAAAGCTGAAGTGGAGCACCATACCTACCCCCCGAAA
GCTACCCAATTGCTGAGTTGTTCTGAGTTGGCGGTTACCGGCGATCAAAC
TCACGACTCTCGGAAAGCGAGAAGAACGTTCTATTGAATGAATACAGCTA
AACAAGGAAACAAATTAGTATGTTTCATCTGGTGACTATTGTCGGACCCG
GGAGTGAATGAGACCTTCCCATTTTCTATTTGCAGTAAACCTGAGAGATT
AAATGTTAAGGGCTATTCTCAGCTTCCAGTTAAATACCCCTGTGTCGCAG
ACCCGCTAGGACCCCAGCACCACTGTAAATTCAGCAAAAATTTTGTACCC
GGTAAAATCTGTACCCGATTTCATCCCCCACTCGAAATTCCATGTTTGCA
CTCCAAAACCATTCCACTGGAATTTTTAACCTTTATACAAAAGATTTTCC
ATTCCCATCGGGATTTCAATAGGAATTTTTATCCCCACTGAGGAAAATAG
TTTTACCGGGGCTGCGAGACAGGGGTGTAGTTAAATTGATGCTTATTAGA
TTACCCATTTTGAGATACTCATTTGTCGAGTTGGCAAAGACTGGAGATCG
GACCAACAACCTTTGGATTGCAATGCGAATGTTTTGCCGTCTTAGCTACC
CGACCAGGGTCGTAAATTTAGAAAAGTATTATTCCAAACTGACACACCTA
ATAGCTAATAACATTAACTAATAGACGTATTATATAACCGAGTGTAACTC
AAACCGATCTAAATTTAAATCAAATATCTTCATTTACTTGGATATTAAGT
TCTCCAAAACAAAATCTAAGATCGGAAATTATCAATTTAAGTGTTTATCT
GATATTATTTTTCAAAACATATCAAAAGATCTGTCTCTTATCCACCTACC
AAAAATTAAATTTGATTCCTCAGTGATTTAAGGCATAAATCAATTTCCTG
TATAATTAAAAAACCTGGTCCTTAAAATAAAATAAATTAGCTAAATTGGT
CTAATTGGCAAACCAGATTGGCGATTTCCTTTATTTGTCATCAAGAATTT
AATTGAACTTAATTGAGGTACGATTTCAATACCTATTTTCAGATTTGTGA
AATTGAGTATAAATAGGGTAGGTGTTTTCATTTGAGATCATCACTTCAAC
TTTTGAATCAAGTTCAAGAAGATCTTAAAGCAACAAAAATGAAGACCATC
ATCTTAATCGCCATCATCGCTGGTAAGTTTAATGAACATAGAGTTTGAAA
TAAGTTTAAATTTAACATAAAATCTCAAAAAAAGTTTAAGTTCTTACCTG
ATATAAAATTTATGTCTATTAATTTATAATTGAAATTGAGTTTTAGTTTT
GACATTTTCCCACCTTTGTCAGTGTCTAGCTAGTCATTTTTAACGTTTAA
GTTTTTAATACTAATTTTCTTTACATCTTCTTCATTTTCAGCTTGCTCAG
CTACTCATCAATACTACACCCCATGTAAGTATCTAAATTCATTTAATAAA
TAACTTTTTAGTAATCACTTTTACTTTTTAACGTTTCTAAGTTTGGCCAT
AAGAAAGGATAAGATCTGTTGATTTTAAAAGTTGAGAACTATTATTTACA
TCTTAAACATTTAATATTCCCAAAACGATAATGGGCATGGTGGGATTATA
TGCTCGGGGGTACTAGGTTTGCGAGGTGACGGGTATGTCCAAGCTAAAAT
TCAAAAATCGACCCTTTGAGAGACTGAATTTCGACGTTATTGCGGTCCCT
TTGAGAGACTATTTTTCCAATTATTAGCTCAAAACTACCAGATTTCTGAC
CCTTTGAGAGAGTTGAATTTGGATATTTCGTGATTTTAAGACCGTTTCAG
AGAATCAATTGCTAATTTATAGTTTTTTTGAGGTTAAAAACAGGGATCCT
TATGGCTTGTACATACCTGACGCCAATTTTCCATAAGTACCCCCACTCCG
GGATGATATGATAGACGTATTTGTGGATAGGAAATCTAAACATCATTATT
CTATTCCTTCCTTCAGGCTCGTACAGCTTATGTAACAACAAGCCAGATGG
AGCTCTCTTCGCATTAGACGAACACCGACCTGATGTTTTTGTTCAATGTT
CAAACGGAGCACCAATTTGCCAACGATGCCCACCTCACACTGAATTCAAC
AACAAATTCTCAGTTTGTGTCCGACGAACTGTTCCTGTATGTAAAGGTCA
TGGATGTAAACCACACAAACCACATAGGCCACATCCAGAACAATGTAAGT
TGAAGAAAGATGTTTACATGTTTTTTAGCTTTTTTCAAATTGGATTTTAA
CTTATATAGGTTAAAGCGTCTGAGTCACTTAATCAATTCCAAAAAGTTTT
AAATTGAACTTCAATCTTTATAATGAAAAACANTTAGCTTTTTCGAATTG
GATTTTAACTTATATTGTGCCACTGAATCAATTTCAAAAAAGTTTTAAAT
TGAACTCTAATCTTTATGATGAAAAACGAATTTTGTTAAAATTCGCATTA
TTACGGACACATTAGTCATTAAAGGTGCGATAATTAGTTCTAAAATCCTA
ATCTTGATTTAATTTTTCGATTTCAGGCCCAAAATCCTTGTGCGCTGATT
ACCCACACAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACTTAC
TACGTTCAATGCGTTGCTGGAAGTCCATTCTGCAGAAAATGCCCACATGG
ATTGATCTTTGACAACAAAGTCAAAGTTTGCGTTTTCCCAACAGTCCAAA
AACCACATGTCCCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034264XLOC_034264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054343-exon-scaffold_242-1575043694:474562..474845TCONS_00054343-exon-scaffold_242-1575043694:474562..474845Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1575043694:471122..471154TCONS_00054343-exon-scaffold_242-1575043694:471122..471154Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1575043694:470352..470579TCONS_00054343-exon-scaffold_242-1575043694:470352..470579Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1575043694:469830..470019TCONS_00054343-exon-scaffold_242-1575043694:469830..470019Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1510915933:474562..474845TCONS_00054343-exon-scaffold_242-1510915933:474562..474845Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1510915933:471122..471154TCONS_00054343-exon-scaffold_242-1510915933:471122..471154Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1510915933:470352..470579TCONS_00054343-exon-scaffold_242-1510915933:470352..470579Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1510915933:469830..470019TCONS_00054343-exon-scaffold_242-1510915933:469830..470019Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1491911889:474562..474845TCONS_00054343-exon-scaffold_242-1491911889:474562..474845Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1491911889:471122..471154TCONS_00054343-exon-scaffold_242-1491911889:471122..471154Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1491911889:470352..470579TCONS_00054343-exon-scaffold_242-1491911889:470352..470579Clytia hemisphaericaexon
TCONS_00054343-exon-scaffold_242-1491911889:469830..470019TCONS_00054343-exon-scaffold_242-1491911889:469830..470019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:469830..474845 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337241	0.243826	0.381841	0.523001	3.70997	3.35085	0.520292	1.52053	0.197078	0.774424	0.34167	0.503229	9.4605	10.6715	1127.18	130.036	5.0542	0.420379	0.842154	0.300111	0.326064	0.528929	0.309339	0.542573	0.796577	0.969445	0.277455	0	0.0748622	0.0762728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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